Basic Information

Insect: Habrosyne pyritoides
Gene Symbol: salm
Assembly: GCA_907165245.1
Location: OU015599.1:2428397-2429875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.3e-07 1e-05 26.1 1.3 1 23 179 201 179 201 0.99

2 11 8.4e-06 0.00062 20.5 1.4 1 23 207 230 207 230 0.96

3 11 0.00038 0.028 15.3 2.2 1 23 239 261 239 261 0.96

4 11 8.6e-05 0.0064 17.3 0.3 1 23 267 289 267 289 0.98

5 11 2.4e-05 0.0018 19.1 2.5 1 20 295 314 295 317 0.93

6 11 3.3e-07 2.4e-05 24.9 1.2 1 23 323 345 323 345 0.98

7 11 2.4e-06 0.00018 22.2 1.5 1 23 351 374 351 374 0.96

8 11 3.8 2.8e+02 2.7 1.1 5 20 380 395 378 398 0.73

9 11 0.072 5.3 8.1 1.4 2 23 405 427 404 427 0.94

10 11 2.7 2e+02 3.1 0.2 1 17 433 451 433 458 0.81

11 11 0.00062 0.046 14.6 0.6 1 23 464 487 464 487 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.3e-07	1e-05	26.1	1.3	1	23	179	201	179	201	0.99
2	11	8.4e-06	0.00062	20.5	1.4	1	23	207	230	207	230	0.96
3	11	0.00038	0.028	15.3	2.2	1	23	239	261	239	261	0.96
4	11	8.6e-05	0.0064	17.3	0.3	1	23	267	289	267	289	0.98
5	11	2.4e-05	0.0018	19.1	2.5	1	20	295	314	295	317	0.93
6	11	3.3e-07	2.4e-05	24.9	1.2	1	23	323	345	323	345	0.98
7	11	2.4e-06	0.00018	22.2	1.5	1	23	351	374	351	374	0.96
8	11	3.8	2.8e+02	2.7	1.1	5	20	380	395	378	398	0.73
9	11	0.072	5.3	8.1	1.4	2	23	405	427	404	427	0.94
10	11	2.7	2e+02	3.1	0.2	1	17	433	451	433	458	0.81
11	11	0.00062	0.046	14.6	0.6	1	23	464	487	464	487	0.91

Sequence Information

Coding Sequence: ATGGATTCAGAGGCGTGTCGATTATGCTGTGAAAACAAAGCAACAATTCATATTTTTGAAAAAGATATTAGTGGAGTCGAACTCTGCGAGAAAATAATATATTGCTGTAAAAATGTACACGTACAGAGAGATGACGGGCTGCCTACACTTGTTTGCCACAACTGTCGGCAGCAGGTGAGCGGATACTATCAGTTTGTATTAAAATGTGAGGCTTCAGACAAGAAGTTACGTTCGCAGGCTGTAGCGCAAGTCCCTCAGTGTCTTTTAAACTTTGAACTTGATTTGAAACGTGAGTTTAACATTGCCTGTGATGATGACCAGCAAATTAAGGATGAACTACCTTTTGAAGAAGATCAGTTAACAGAAATCAAAGAAGAATTACCTGATGGCAACATCAGTGTTGAAAACCTTGAAGAATATAAACAAGAACATATAGATTTGAAACAAGACAAAATTGTAAATGAAGATCCAAACACAAATCATAAAACAAGAAAAAAGAAAACATATAAGAAAAATAAGTTTAAAGATTTTACATTCACATGCTCCGTCTGTGGAAGAAGTTGTGTTAATCAATCAACTCTGGCTGTACACATGCGTACACACACCAATGAGCGACCATATCGGTGTTCCTCCTGTGATAAATCATACAAAGATAGTGGCACATTAAAAAGGCATGCATTGAGAAACCATTTCAAGGAGAAAAGGCAAAGGAACTTTATCTGTGAATGTTGCGGTAAAAGTTTCTATTCTAAAAGTGATGTAGTAATCCACAAACGGACACACACTGGTGAAACTCCATATGCCTGTCCTATATGCTCAGTGAGGTTTACACAAATAAGTGCCATGCTAAGGCATAAGCGACGGCATACTGGAGAGAAATCTTATTCATGTCAGGAGTGCTCCAAGAGTTTCTGTACCAAAGAAGAATTGAAAAATCATCTTCCTGTTCATACCAGTGTGAAGAATTTCTCATGTCCTCTCTGCAACATCCCCTTCAAGTACCAAAACAATTTGAAGAAGCATATTAAAACACATTCAGAGAAGAATAAATACATTTGTAATTATTGTGGACGTATATGTACAACAAAGGGTAATTTGAAAGTACACATTGACCGACAGCATTCAGAGAAGTCAGGGCATTGTAACATATGTTCTAAACATGTGTCCAACATCGAAGTCCATATGTGGAGGCATACAGGTGAAAGACCACTTAAATGTGAGCTGTGTACCAGTAGTTTCTATGAATTGAAAGCTTTGGCCCACCACATAAACTTTAAACATAAAAAGACAGATAAATATAAGTGTGAAGTGGAGGGTTGCATGAAAAGCTTCCCATCAAGACCAATGCTAGACTTCCACACAGCAAAATTGCATGGAACTCAGATACCATTCCCATGTGATAGGTGTTCTCGAGGATTTTACAGAAAGAATGATCTTGCAAGACATAAAATTGGTACCCATAAGGAAAAACTTAAATAG
Protein Sequence: MDSEACRLCCENKATIHIFEKDISGVELCEKIIYCCKNVHVQRDDGLPTLVCHNCRQQVSGYYQFVLKCEASDKKLRSQAVAQVPQCLLNFELDLKREFNIACDDDQQIKDELPFEEDQLTEIKEELPDGNISVENLEEYKQEHIDLKQDKIVNEDPNTNHKTRKKKTYKKNKFKDFTFTCSVCGRSCVNQSTLAVHMRTHTNERPYRCSSCDKSYKDSGTLKRHALRNHFKEKRQRNFICECCGKSFYSKSDVVIHKRTHTGETPYACPICSVRFTQISAMLRHKRRHTGEKSYSCQECSKSFCTKEELKNHLPVHTSVKNFSCPLCNIPFKYQNNLKKHIKTHSEKNKYICNYCGRICTTKGNLKVHIDRQHSEKSGHCNICSKHVSNIEVHMWRHTGERPLKCELCTSSFYELKALAHHINFKHKKTDKYKCEVEGCMKSFPSRPMLDFHTAKLHGTQIPFPCDRCSRGFYRKNDLARHKIGTHKEKLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -