Hpyr016620.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015615.1:5082498-5096301[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.23 12.4 1.1 1 23 235 257 235 257 0.98 2 12 0.00098 0.072 14.0 0.5 1 23 264 287 264 287 0.97 3 12 0.59 43 5.2 1.5 1 23 291 313 291 313 0.95 4 12 6.7e-05 0.0049 17.7 3.1 1 23 318 341 318 341 0.98 5 12 0.0011 0.081 13.8 2.6 1 23 345 368 345 368 0.94 6 12 0.77 57 4.9 0.0 3 20 386 403 385 405 0.90 7 12 0.033 2.4 9.2 0.1 2 23 416 437 416 437 0.97 8 12 0.00063 0.046 14.6 0.1 3 23 462 483 460 483 0.95 9 12 4.1e-06 0.0003 21.5 1.8 2 23 493 514 492 514 0.97 10 12 2e-05 0.0015 19.3 1.5 1 23 520 542 520 542 0.98 11 12 7.1e-07 5.3e-05 23.9 1.7 1 23 548 570 548 570 0.97 12 12 5.2e-07 3.8e-05 24.3 1.7 1 23 576 599 576 599 0.98
Sequence Information
- Coding Sequence
- ATGTCTACACTATCAGTGTGTAGAATTTGCCTAGTAGATAATGTTCGTATGCACCTTGTACAAGATACTAGTATCCTAAATGTATACGAGAGACTATGTAATAATTTGTCACAAAATGAAGAAGAAAAAGAAGATATACCTTTACTAGCTTGTTACATATGCTACAGGCAACTTGTAAATTGTCTACATTTTATGTTAAAAGCACAGAAAGCCGATGCACTTCTGGCACAAGTTCTAAATCAACATGAGCAAACACTGTTGCACATAAATAGGGAAGCTCTCAATCTGATCCCAAATCTCGGCATATCAGTATTGGAACATACAGTTGCTATTGAAGGAGCATTGTCAAATAATATTGATGTAAAGGCAGAAGTGTCCCTTGATGCCAAAAATGATGTGAAATTTAAACAAGAGTGTGATGATAAACCAGAAATACTAGACCAACCATCGGACATAGACAATCGTGACGTCACCGATTCGGAGGATGACGTGCCATTAAAGAACATAAGTGTCAAGAAGAAATTACAAAGTAGAGTTAAGCTTAGAGATAGAGTCAAAGTGAGACAGAAAGAAGGAAATTCTGAGAAGAAACCGCATGTAAAAGCCTTCAAAATAGATGCATTACGGATACAATTGACATTAGAACAACAAATGCAGCAGCTACTGCAAAGAGCTAAATCAATGAACTTCCTCAACTCTCCGTACAAGTGCGAGCTCTGTTTCAAAGGATTCGTTGATACTCGCGCTTATGAGAATCATAAGGAGAAACATGATGAGCGCAGCGGTACCTTTGAATGCGGTGTCTGCCGCATGCGGTACAGTAGCGCGCGGCAGTTGCGCTCCCACAACAACACAGCGCACGCGACCCACTACAAGTGCAACGTGTGCGAACATGTCTCTCATACTGCAAATCAGGCGAGAGAGCACGAGAACTGGCATAACGGATTTACATACGAATGTCAACTGTGTAGCAAGAAATTTAGGAAATCGACATCTTATTTAACACACATGAGGATACGACATCCAACAGATCATGTATGTAATGTGTGCGGGAAAACTTTCGTTGGCAGACACGGCTTGCTTATGCATAAGACTAAAACGCACAAGAAAGCGGAGTTCTGCGAGAATCCCGACGAGCCGGCTTCGGAGAGGTTCTGCCAGGAGTGCAACATCCAGTTTGTTAGCGTCGATGCGTGGAAGATTCACTTTATCACAACTTCAGTTAAACACAGCAATAGCAGTCCACAGTGCCGCATATGCAGCATCAGCTTAGTAAGCGACGAAGCATTGGCCACGCATATGCGGGATCATCAGAAGACCTTCCGGAGACAACGCCTGGAGCGACCTCCAAGAGTCAATCCTGGAAAGTTGGTACTCCTGGCTTGTGACCAGTGTGAAGCCAACTTTATAAACCGATCAAAGTTACAGGCTCATGTGAAAAGGGTACATCTAGGCTTAAAATACAATAAGAATATTGTTTGCGAGGTTTGCGGTAAGAAATGCACGTCAAATGCCTCACTGAAATACCACCAGCGCACCCACACTGGCGAGAGGCCCTATTCGTGTGTGACGTGCAACAAACGCTTCTCGGACACTAACCAGCTTCGAATCCACGGCCGCACGCACTCGGGTGAGAGGCCTTATTGCTGCGCTGTTTGCGGCAAGCGGTTTAGTCAGAAACCTGCTCTGAATAGACACTATAGGGTACACACGGGAGCGAAGCCCTACGAATGTCAATACTGCTCAAAAACTTTCAGCCAGTCGAACTCTCTAAAACTGCACGTCAGAACTGTACATTTAAAACTGCCCCCAAATAACAGGAAAAATAAGAATCAAAATGCTTTGCAAAGCAATGAAACGGTGATAGAAAAAGAACAAGGTGATGTTGCTGTTCAAACTTTAGGATGA
- Protein Sequence
- MSTLSVCRICLVDNVRMHLVQDTSILNVYERLCNNLSQNEEEKEDIPLLACYICYRQLVNCLHFMLKAQKADALLAQVLNQHEQTLLHINREALNLIPNLGISVLEHTVAIEGALSNNIDVKAEVSLDAKNDVKFKQECDDKPEILDQPSDIDNRDVTDSEDDVPLKNISVKKKLQSRVKLRDRVKVRQKEGNSEKKPHVKAFKIDALRIQLTLEQQMQQLLQRAKSMNFLNSPYKCELCFKGFVDTRAYENHKEKHDERSGTFECGVCRMRYSSARQLRSHNNTAHATHYKCNVCEHVSHTANQAREHENWHNGFTYECQLCSKKFRKSTSYLTHMRIRHPTDHVCNVCGKTFVGRHGLLMHKTKTHKKAEFCENPDEPASERFCQECNIQFVSVDAWKIHFITTSVKHSNSSPQCRICSISLVSDEALATHMRDHQKTFRRQRLERPPRVNPGKLVLLACDQCEANFINRSKLQAHVKRVHLGLKYNKNIVCEVCGKKCTSNASLKYHQRTHTGERPYSCVTCNKRFSDTNQLRIHGRTHSGERPYCCAVCGKRFSQKPALNRHYRVHTGAKPYECQYCSKTFSQSNSLKLHVRTVHLKLPPNNRKNKNQNALQSNETVIEKEQGDVAVQTLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -