Hpyr001516.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015614.1:958988-962889[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.011 0.81 10.7 0.4 1 23 88 111 88 111 0.94 2 20 0.061 4.5 8.3 1.1 2 23 138 159 137 159 0.94 3 20 2.9e-06 0.00021 22.0 1.8 1 23 207 229 207 229 0.98 4 20 0.087 6.4 7.9 0.6 1 20 263 282 263 286 0.86 5 20 1.3 99 4.1 0.2 1 11 293 303 293 309 0.83 6 20 0.11 8.2 7.5 0.1 1 23 359 381 359 381 0.95 7 20 0.0007 0.052 14.4 0.9 1 23 450 472 450 472 0.99 8 20 3.7e-05 0.0027 18.5 2.9 1 23 476 498 476 498 0.98 9 20 0.034 2.5 9.1 0.3 1 21 503 523 503 526 0.89 10 20 0.2 15 6.7 5.7 1 23 532 555 532 555 0.95 11 20 0.12 9.1 7.4 0.1 1 23 611 633 611 633 0.95 12 20 2.6 1.9e+02 3.2 0.0 2 23 657 679 656 679 0.93 13 20 0.0017 0.13 13.2 2.8 1 23 701 723 701 723 0.97 14 20 0.0028 0.21 12.6 0.3 1 23 727 749 727 749 0.96 15 20 0.001 0.075 13.9 0.7 1 23 756 779 756 779 0.97 16 20 0.042 3.1 8.9 1.6 1 23 785 808 785 808 0.95 17 20 0.013 0.94 10.5 0.6 1 23 814 837 814 837 0.96 18 20 0.0052 0.39 11.7 1.1 1 23 843 865 843 865 0.97 19 20 7.9e-07 5.8e-05 23.7 0.6 1 23 871 893 871 893 0.99 20 20 0.00012 0.0086 16.9 5.1 1 23 899 921 899 922 0.96
Sequence Information
- Coding Sequence
- ATGACACTAACTCGAGGATGTTTCGTCGCGGCCTCCGTGCTCTGTACCGCTCATGATGCGGAAGGAAATGTAGGTGCGATTAAACCAGTTAGGAAGTTAAAGGAGGTCGTAAGCGAGCGACAGATGCGAAGGCGTCGACGCGCAAATAATGAGCTGGCTGAAGAGTCCGAAAAACGCATTTCAAAAACAATGATGCGACGGAACGCTTTGATCCTTCTTGAAAATTCAACCGCCTGGGCTTTCAGATGGTTCCAATGCTCCTTCTACTGTTCCTATTGCGACGCAAAGTTTGTTGATGTTGACCCTTTCCGCAATCACGTAAAAGATAATCATTTAAACGCAATGCCGACTAAAAAAGTATTCGCGAAGCTAACCGAAAATAACATGGTCAAAATCGATATAGCAGATCTTAGATGTAGATTATGTAATAGTAATTTTAATAGCTTAGACCTTTTGAAAGATCATTTATCGTTTCACGGACAAAAGTTGAATAAGGATTTTAGCGACGGTGTACTACCTTTCAGGCTCGATGACAACGGATTTTATTGCCAAATGTGCTCTACACACTGTTTAACCTTCTCGAAAATGAACGAACACATGAATACGCACTATCAAAACTATGTTTGTGATCAATGTGGAAAGACATTTGTTTCTAAATCTCGTTTTAGGAAGCATGTGCAGTCGCATCAGAAAGGTTGCTTTCTATGTGGCGAATGTGATGAAGTTCTAGACTCAAGAAAAGCGAGAATGTGCCATAGGATGAAAGTACATAAGAATGGGGTGCGATACTCATGTCCTAGATGTCCAGAAACTTTTACGGCTTACCATACAAGAGCGAAGCATCTGGTGGATGTTCACGCCCAGCGAAAGAAAGAGTATGACTGCAACGCATGCGATAAAACTTTTGATGCTAGTTCAAAGCGCGCGAGAACAGACGTCGGAAAGCAGGGAACTTCCACTGATGCAGTAACTGTAGTATGGAAGCGGAAACCGAAGTTATATGAGGATAAAGCCAATGCTGCTTTCTTACTTGAGAATTCCAATGCGGTTGTATTTAGATGGAATCGAGGAAAGTTTATGTGTGCGTATTGTCCTTTAATATGTGCTAACGTTGCCGAATTACGAGTGCATTCAGAAATTCACGAGAAATTAGACGTCCTTGAGAAACCAGGTGTTAGTAACTCATTCCCTCTAAGGATAGACATTACTGACCTATCTTGCAATATATGCTGCGATCCAATGGATAACCTGACTGATTTAAAAAAACACTTAATGGAGGTGCATTCGAAGAAAACAGATTCAAATTTCACAGACGGTGTTATACCATATGTCTTGACAGGAAAGGAGTTTACATGTGTTCACTGTGGAAAACTTTTTGTTGGTATCATGACGTTATTCGTACATATGAACACGCATTATCAGAGTTACGTATGCCACACTTGTGGTAAAGGATATTCGGGGCAACACAAATTGCGAGCTCACCAATTAAGCCACGGAATCGGTAAATTTAAGTGTTCGAAATGTGATTTAATCTTTCCTAGTTATGTTGAACGAAAGAAGCATGCCGATGGAGCTCATGGTACGAAAGAGAGACACCGATGTCCAATCTGTAATGTTCATTTCGATTCGTACCACCAACGTCTACGTCATCTAGATAGAACACATGGTCAGAAAGCTGAATATCGTTGTGGGTTATGTCCTTCTGTATTTGGATCCGTCGAAATCAAAATAAAATGGAGACCGAAGTGCAAGTATAACGATCACAGAGATAATGCCGCTATAATTTTTGAATGCTCAAACGTCTGTCCGTTTAGATGGAAGCGTGGTGCTTTCACTTGCGCCTTCTGCCCTATTACCTTTGGTGATTTTAGTGGAGTAAGGGAGCACGTGTTAGACCATCCAAATAGAGTAGAGGCTTTGCGTATCTCTCGTCCTATCTCTAATATCAAAGTTGATGTCACAGATCTCAGATGTGAGATCTGTCTCGAAACAATGAAGGACATCGAGACGTTAGCTGATCATCTTATTATAACTCACAATAAACGTATTAATAAAAAATATGATTTAGGAGTAATGCCATTTTTAGTAGCTGGAAAACAGTTTCATTGCACAAAGTGCGACGAAACATTCGAGCTGTTTTCGAAATTGAACGCACATTTGAACCAACATTATCCAAATCACATTTGCTTCCTATGCGGTAAAGCATTTTCTCTAGTTGGTAGACTCAAGGCCCATCTACTTATACATGAACGAGGAGATCACCAGTATAAATGCACGAGATGCAGTGAGGTTTTCGCGACGAAAGTTATGAGAAACAATCACATCAGAGCCTCTCACAAACCGGCATCTCGGTACAGGTGTCCATATTGCCAAGATTCATTTAAAAGTTACGCCGATAGAGGCAAGCATTTGAAGCAATATCACGGCAAGAAAGTAGAGTATCCATGTCATTTATGTCCGGCTGTTTTCGCCATGTATAACCAGAGAACAAAGCATATAAAACAGGTCCACATTAAGCAGAAAACATTTTCGTGCGCTATTTGTTGTTTTATGTTCGTCACTGCCGCTCAGTTGAGGAGTCATATGATCAAACATGGCGGCGAAAGAAAGTACCAATGTCAGGTGTGTAAGAAAGCGTACGCTCGACCCAAGACGTTGAGAGAGCATATGAGAATACATAATAACGACAAGAGGTTCGTCTGTGAGTACTGCAATAATGCCTATGTGCAGAAATGCAGTCTGAAAAGTCATATGCGTACGCATCATCCTAATGCTGAACCTGTAAAGAAGATCGATTTGTCAAATACTTACTGA
- Protein Sequence
- MTLTRGCFVAASVLCTAHDAEGNVGAIKPVRKLKEVVSERQMRRRRRANNELAEESEKRISKTMMRRNALILLENSTAWAFRWFQCSFYCSYCDAKFVDVDPFRNHVKDNHLNAMPTKKVFAKLTENNMVKIDIADLRCRLCNSNFNSLDLLKDHLSFHGQKLNKDFSDGVLPFRLDDNGFYCQMCSTHCLTFSKMNEHMNTHYQNYVCDQCGKTFVSKSRFRKHVQSHQKGCFLCGECDEVLDSRKARMCHRMKVHKNGVRYSCPRCPETFTAYHTRAKHLVDVHAQRKKEYDCNACDKTFDASSKRARTDVGKQGTSTDAVTVVWKRKPKLYEDKANAAFLLENSNAVVFRWNRGKFMCAYCPLICANVAELRVHSEIHEKLDVLEKPGVSNSFPLRIDITDLSCNICCDPMDNLTDLKKHLMEVHSKKTDSNFTDGVIPYVLTGKEFTCVHCGKLFVGIMTLFVHMNTHYQSYVCHTCGKGYSGQHKLRAHQLSHGIGKFKCSKCDLIFPSYVERKKHADGAHGTKERHRCPICNVHFDSYHQRLRHLDRTHGQKAEYRCGLCPSVFGSVEIKIKWRPKCKYNDHRDNAAIIFECSNVCPFRWKRGAFTCAFCPITFGDFSGVREHVLDHPNRVEALRISRPISNIKVDVTDLRCEICLETMKDIETLADHLIITHNKRINKKYDLGVMPFLVAGKQFHCTKCDETFELFSKLNAHLNQHYPNHICFLCGKAFSLVGRLKAHLLIHERGDHQYKCTRCSEVFATKVMRNNHIRASHKPASRYRCPYCQDSFKSYADRGKHLKQYHGKKVEYPCHLCPAVFAMYNQRTKHIKQVHIKQKTFSCAICCFMFVTAAQLRSHMIKHGGERKYQCQVCKKAYARPKTLREHMRIHNNDKRFVCEYCNNAYVQKCSLKSHMRTHHPNAEPVKKIDLSNTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437317;
- 90% Identity
- -
- 80% Identity
- -