Hpyr014199.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015612.1:724516-727061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.89 65 4.7 1.0 5 20 217 232 215 234 0.87 2 12 0.001 0.076 13.9 0.5 3 23 262 282 260 282 0.97 3 12 0.001 0.075 13.9 2.4 1 23 303 325 303 325 0.95 4 12 8.4e-05 0.0062 17.3 0.9 1 23 333 356 333 356 0.97 5 12 0.00047 0.035 15.0 1.3 2 23 363 384 362 384 0.95 6 12 7.6e-05 0.0056 17.5 6.6 1 23 390 412 390 412 0.98 7 12 8.3e-08 6.1e-06 26.8 0.4 1 23 418 440 418 440 0.96 8 12 5.4e-06 0.0004 21.1 0.9 1 23 446 468 446 468 0.99 9 12 3.9e-07 2.9e-05 24.7 0.3 1 23 474 496 474 496 0.98 10 12 0.0002 0.015 16.1 0.5 1 23 502 524 502 524 0.98 11 12 3.2e-05 0.0024 18.7 2.2 1 21 530 550 530 552 0.96 12 12 9.9e-06 0.00073 20.3 1.7 1 23 558 580 558 580 0.98
Sequence Information
- Coding Sequence
- ATGGAAATAAGTGTTGAACTGTTCGACAAAATATGCCGCGCTTGTTTATGTGTGTCACCGAGTATGAGGTCTCTATTTACAAAAGCAGACGATCATGGGCATTACTTACTAGAGGTATTCGCTTCAGCATCAAATTCACACATTAGTTTAGAAGACAAACTACCGAAACAGGTTTGTGGTGAATGTGAAGCTATCATGTACAAGGCTGAAGCGTTTAAACAGCGCTGCAATGAATCTGCCGTCATTTTAAAGAAGGTATACGATGATAGTTTAACAAATTTAACCATTTCGGATATTAATCACGAATCTTTAATTAAAAGAGAAAAGTGCGAAAATATAGACAAATCAAGTATTAATAAGGTTAAAGAAGCCTTAGACACCAGTATTCAAGATTGTTTTGATAAGAAAGACATAGTTTTAAGTCAATTTTCATCTTGTTTTGATCCTGATAGTACATTGAATGAATTGGTGAAACCAATTAAAGAATTACCAGATAAAGATATTAAAATAGTTAAAATAGAGTATGGTGATATTGTGGAACCTCAAGATTTATTCGAATCTGATTTTGATGTACGAGAGGAACTAGAAACATTACCCATAGACTACAAACCTGAAGAACCAACAGAAAAACCGAAAACTTATCCATGTCACTGCGGACTCTCTTTTAAAAGCAAAGATATATATAGAAAGCACAGTAAATCACCTAGTTGTGAGAAATACAAGAAAATGCTCAAGAAATGCATGAAAAAAGATAAATCAATACCAATAAAGAATCAAATTGCATGTCAGAGTTGTAATCAGCAGTTTAATACTGTCAGCTCGTGGAATATACATCAACGGACACATGGTAAACAGGAAATTCATACGAAAAAAGTGAAGCTGGAAAAGGTTGAACCAACAGAAGAGTTTTTGTGTGCGTTGTGTTCAAGAAAATGTAAGTCTTCAAAATCTTTAGCGGCTCACATAAGACGTCACGAAGAAAATTCGAATGTAAAATACACATGTGACCAATGCAAGCGAGAGTTCAAATACAAAGCATATTTGGATAACCATATTTTATCCGTACATATGCGAGATAAAAGCTTAACCTGTGAATACTGTATTAAATGTTTCTCTACGCAAGAAAGTTTGGAGGTTCACAGAGAGGAGCATAAAATGGAGAAGAAACACCAATGTCATATCTGTAACAAGGCTTTTATAATGTTGTGTACGTTGAAAGATCATATGCGTACACATACCGGTGAGAAACCGTTTCTATGTTCAATTTGTGGACGAGGCTTCAGTCAGAAGGCTAACCTGGCTCAGCATATGCGGAGGCATCAGGGACTCAAGCCGTTTAAGTGTGAACAATGTGAGAAGAGGTTTGTCTCCAAGGGGGAATTAGACGCTCACACCCGCAAACACAGCGGCGCTCATCCCTTCGTCTGCGACGACTGCGGGAATGGCTTCACCACCTCCAGCGCTTTAGTCAAGCACCGACGTACACACACCGGGGAAAGGCCATACGCTTGTGACTTGTGCACAATGCGATTCGCCGCCTCTGGCACATTGAAGAACCATCGAAGAACTCACACTGGCGAACGCCCTTTCCAATGCTCGTACTGTGAAAAAGCATTCGTGCAACGTACGGATTTGATATCCCATATTCGTTGTCATACGGGCGAGAGACCGTATATTTGTAATCATTGCGGACACGCGTTCAGGAAGGCGGCAGCGTTGAAGACCCATGTTAGACTGCACGGGAAAGATGCTAATATGTCAGTGTTGCAAGGTGTTAATGTTTTGTTGAGCGGCATGCAGATGCAGTGTGATGGACAATGA
- Protein Sequence
- MEISVELFDKICRACLCVSPSMRSLFTKADDHGHYLLEVFASASNSHISLEDKLPKQVCGECEAIMYKAEAFKQRCNESAVILKKVYDDSLTNLTISDINHESLIKREKCENIDKSSINKVKEALDTSIQDCFDKKDIVLSQFSSCFDPDSTLNELVKPIKELPDKDIKIVKIEYGDIVEPQDLFESDFDVREELETLPIDYKPEEPTEKPKTYPCHCGLSFKSKDIYRKHSKSPSCEKYKKMLKKCMKKDKSIPIKNQIACQSCNQQFNTVSSWNIHQRTHGKQEIHTKKVKLEKVEPTEEFLCALCSRKCKSSKSLAAHIRRHEENSNVKYTCDQCKREFKYKAYLDNHILSVHMRDKSLTCEYCIKCFSTQESLEVHREEHKMEKKHQCHICNKAFIMLCTLKDHMRTHTGEKPFLCSICGRGFSQKANLAQHMRRHQGLKPFKCEQCEKRFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRTHTGERPYACDLCTMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRTDLISHIRCHTGERPYICNHCGHAFRKAAALKTHVRLHGKDANMSVLQGVNVLLSGMQMQCDGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417047;
- 90% Identity
- -
- 80% Identity
- -