Hpyr001515.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015614.1:953750-958601[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.075 5.5 8.1 0.9 1 20 112 131 112 133 0.93 2 20 9.2 6.8e+02 1.5 0.0 3 23 162 182 161 182 0.92 3 20 0.23 17 6.5 0.3 2 23 205 226 204 226 0.97 4 20 0.013 0.97 10.4 0.1 1 23 230 252 230 252 0.96 5 20 0.005 0.37 11.8 0.2 1 23 257 280 257 280 0.87 6 20 0.01 0.75 10.8 0.1 1 23 286 309 286 309 0.94 7 20 0.0012 0.09 13.7 1.5 1 23 316 339 316 339 0.98 8 20 9.6e-05 0.0071 17.2 4.3 1 23 346 368 346 368 0.97 9 20 3e-05 0.0022 18.8 2.4 1 23 374 396 374 396 0.98 10 20 0.0019 0.14 13.1 0.1 3 21 401 419 399 420 0.95 11 20 3.2 2.4e+02 2.9 0.4 1 19 486 504 486 507 0.84 12 20 2.2 1.6e+02 3.4 0.2 2 23 535 556 535 556 0.93 13 20 0.00086 0.064 14.2 0.1 2 23 579 600 578 600 0.96 14 20 0.015 1.1 10.2 0.1 1 23 604 626 604 626 0.95 15 20 0.0031 0.23 12.4 0.2 1 23 631 654 631 654 0.87 16 20 0.0082 0.61 11.1 0.3 1 23 660 683 660 683 0.95 17 20 0.0011 0.081 13.8 1.3 1 23 690 713 690 713 0.98 18 20 3.3e-05 0.0025 18.6 1.0 3 23 722 742 720 742 0.97 19 20 2.7e-06 0.0002 22.0 3.1 1 23 748 770 748 770 0.98 20 20 3.9e-05 0.0029 18.4 1.0 2 23 774 796 773 796 0.96
Sequence Information
- Coding Sequence
- ATGCTGTCTGCTAGAGATTCTTTTAATTCTATCCTACGGGGCAAAGGTTCTCGTTATGAGTGTCAGCATGTGGCGTGCGGTTTGAAGGATATTAAGGCCGATATGAATGACTTTGAAGGAGGTTTATTGAGTTACGGAGGAAGAAGCCGCAAACCGAGGGAATCGTCTGTTGTTAAAAAACAGGGCTCTGATAACAAAGGGTCGGTACAGTTACATGGAAATGATAAATCAAACAATCAGAAGAATGTTATAGCACGAAATATGATGAAAAAGAACGCAGTTGCCATATTGGACTGTTGGTCAGTTTGTCCATTCAGATGGACAAAGAATCGATTTAAATGCGCGTACTGCGAAGAAGATTTCACTGAATGCAATGTTCTACGGAAACACGTCAGTATGTGTTCAAAACAACATACCGTTAAAGACATTTACAGTAAATTCAAGGAAATGCCTGTTATTAACCTCGATGTGACAGATGCTTCGTGTTCTGCCTGTGCAGAACCTTATGCGAACGTCGCACAAATGCGCGCACATGTTATCCAACACGGCTTTGAATTCGACAAGAACCACCCCGATGGAGTTGTTCCCTTCTCGCTCAATAAAGACTCTTGGAAATGCGTTATATGCGAAGATAAATTCAATAACTTCCTAAAACTCTACGAGCATATGAATGTACACTACCAACACTATATTTGCGCGTCTTGCGGCAAAGGATATATGACTGCACCTCGTTTGAGAAAACACACGGACATGCATATATCCGGTTCGTTCCCGTGCAATAAATGTGGAAGAGTATTCACGTTGCGTTCGGCTAGAGATTCTCATAAGGCAGTCGCACACGCTAAAGGTCCTCGTTACGAGTGTCCGCAGTGCGACATGCGGTTCGAAGGGTATTACGATCGGATGGCTCATTTAAAAGATGCTCATAGAGTGAAGGAGGTCACATACCGATGTGCGCATTGCGAATTGTCCTTTACTACAAGCGCCAAGCGTTCTATTCACGTCCGAACTGTTCATTTTCCACCTCAACACGAGTTCAGCTGCACTCAATGCGAGTGGAAGTTCAAAAGTAACTGTGAGTTGAAGAGGCATATGGTAAAGCATACAGGGGAGAGGAATTTCCATTGTTCCGTTTGTGGGAAGTCATTTCTCAGGAGCTATGCTTTGAGAATTCATTTGAAAACCCATCAGGAAGTTAACTGTAAATGGTGCGGGGCCTTGTTCAAACAGAAGACTCAATTGATTTCGCATCTGAGACTAAGCGGCAAATCGAGCTGTGAAACTGTGATAAAAAATGAGGAAACAGAAAACAATAGCGTAACGCAGTCAGATAAAAAGCCGAAAACCAAATACCAAAGGAGCGCTAGAGCTGAAGAACGCTTCTTAATCAAAAAAAACGCAGCTGCCATATTAGAATGCTGGACAGTTTGTCCATTTAGATGGAAAAAGAATAGATTCAAATGCGCATATTGCGAAGCTGACTTCACCGAATGCAATATACTACGAAACCATGTTGAACTGTGCTCAAAACAACACACTGTCAGAGATATCTATAGCAAATTCAAGGAAATGCCCATGATTAACGTTGATATAACAGACGCTGTGTGCTCCTTCTGTACCGCACCTTTCACAGATATCACTCGAATGCGAGAACACGTCATCCAACACGGCCTTGAATTTGATACGAAACATTCCGAAGGTATCCTTCCATTCTCTCTAGACAAAGAGTTTTGGATGTGCGTTATTTGTGGAGAATCTTTCAATAACTTTCTTAAACTATACGAGCACATGAATGTCCATTATCAACATTATATTTGCGTTACTTGTGGCAAGGGATATATGACTGCCCCTCGTCTGAGAAAACACTCTGAAGTCCATATATCAGGAACATTTCCTTGTGACAAATGTGGTAAAGTATTCACTCTCCGTTCAGCCAGAGATTCCCATAAAGCTGTGGTGCACGCCAAAGGTCCACGTTACGAGTGTCCACAATGCGACATGCGGTTCGAAGGTTATTACGACCGTATGAATCATCTGAAGGAGATCCATAAAGTCAAGGAGGTTTCATACCGATGTGCACATTGCGAGTTGACGTTTAAGACGAGCGGGAAACGAGCTATTCACGTCAGGACGATACATTTTCCTCGCCAACGTGAGTTTGGTTGCACACAATGCGAATGGCAATTTAAAACTAACTATGAGCTGAAGAGGCACATGGTCAGACATACTGGAGAAAGGAGTTTTCATTGTTCTTTGTGTGGGAAATCGTTTCCCAGAAATTTCGCTTTGAGGACACATCTGAAAACTCATCAAGAGCTCAACTGCAAGTGGTGCGGGTACATGTTTAAACAGAAGACTCAGATGGTTTTACATATGAACACGAGTCATCCTGAAATGAATAGTTCACTGCCTACAGATTCGTAA
- Protein Sequence
- MLSARDSFNSILRGKGSRYECQHVACGLKDIKADMNDFEGGLLSYGGRSRKPRESSVVKKQGSDNKGSVQLHGNDKSNNQKNVIARNMMKKNAVAILDCWSVCPFRWTKNRFKCAYCEEDFTECNVLRKHVSMCSKQHTVKDIYSKFKEMPVINLDVTDASCSACAEPYANVAQMRAHVIQHGFEFDKNHPDGVVPFSLNKDSWKCVICEDKFNNFLKLYEHMNVHYQHYICASCGKGYMTAPRLRKHTDMHISGSFPCNKCGRVFTLRSARDSHKAVAHAKGPRYECPQCDMRFEGYYDRMAHLKDAHRVKEVTYRCAHCELSFTTSAKRSIHVRTVHFPPQHEFSCTQCEWKFKSNCELKRHMVKHTGERNFHCSVCGKSFLRSYALRIHLKTHQEVNCKWCGALFKQKTQLISHLRLSGKSSCETVIKNEETENNSVTQSDKKPKTKYQRSARAEERFLIKKNAAAILECWTVCPFRWKKNRFKCAYCEADFTECNILRNHVELCSKQHTVRDIYSKFKEMPMINVDITDAVCSFCTAPFTDITRMREHVIQHGLEFDTKHSEGILPFSLDKEFWMCVICGESFNNFLKLYEHMNVHYQHYICVTCGKGYMTAPRLRKHSEVHISGTFPCDKCGKVFTLRSARDSHKAVVHAKGPRYECPQCDMRFEGYYDRMNHLKEIHKVKEVSYRCAHCELTFKTSGKRAIHVRTIHFPRQREFGCTQCEWQFKTNYELKRHMVRHTGERSFHCSLCGKSFPRNFALRTHLKTHQELNCKWCGYMFKQKTQMVLHMNTSHPEMNSSLPTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -