Hpyr001518.1
Basic Information
- Insect
- Habrosyne pyritoides
- Gene Symbol
- -
- Assembly
- GCA_907165245.1
- Location
- OU015614.1:965968-974443[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00076 0.056 14.3 2.2 1 23 278 301 278 302 0.94 2 25 0.00041 0.031 15.2 1.5 1 23 374 396 374 396 0.98 3 25 0.0098 0.73 10.8 0.1 1 23 400 422 400 422 0.94 4 25 2.9e-05 0.0022 18.8 0.6 1 23 427 450 427 450 0.97 5 25 0.002 0.14 13.0 1.3 1 23 456 479 456 479 0.91 6 25 0.098 7.2 7.7 0.3 1 11 486 496 486 500 0.89 7 25 0.71 53 5.0 1.4 1 23 625 648 625 648 0.94 8 25 8.1 6e+02 1.7 0.2 2 23 673 695 672 695 0.92 9 25 0.012 0.85 10.6 0.3 1 23 719 741 719 741 0.97 10 25 0.0022 0.16 12.9 0.4 1 23 745 767 745 767 0.98 11 25 0.0013 0.096 13.6 0.5 1 23 772 795 772 795 0.95 12 25 0.017 1.3 10.1 0.4 2 23 802 824 802 824 0.93 13 25 0.045 3.3 8.8 6.3 1 23 831 854 831 854 0.96 14 25 0.00014 0.01 16.7 2.7 2 23 861 882 860 882 0.96 15 25 3 2.3e+02 3.0 0.1 1 10 888 897 888 899 0.93 16 25 0.029 2.1 9.4 0.4 1 23 1041 1064 1041 1064 0.94 17 25 1.3 97 4.1 0.2 2 23 1090 1111 1089 1111 0.95 18 25 0.019 1.4 9.9 0.2 1 23 1133 1155 1133 1155 0.97 19 25 4.7e-05 0.0035 18.1 0.3 1 23 1159 1181 1159 1181 0.98 20 25 0.0001 0.0077 17.1 0.4 1 23 1186 1209 1186 1209 0.96 21 25 0.00085 0.063 14.2 0.4 2 23 1216 1238 1216 1238 0.97 22 25 0.00015 0.011 16.6 1.1 1 23 1245 1268 1245 1268 0.98 23 25 0.0058 0.43 11.6 3.9 2 23 1275 1296 1274 1296 0.96 24 25 1.2e-06 8.8e-05 23.2 0.9 1 23 1302 1324 1302 1324 0.98 25 25 0.17 13 6.9 0.2 2 23 1330 1352 1329 1352 0.91
Sequence Information
- Coding Sequence
- ATGTCCGGTCAAACTGACCGGTCTGTCCGGCTATTAGGGCGAGACGATCAGGCAACCACAAGCACTTCCACTGGTTCAAGAGGTCCACGAGGCAAAAATGCACAATATTACCGCGATTACAGAGCACGGAAGCGAGCGGAGCTGGAAAAAGAGTTGTTGAATAGAACTAGTGATCCTTCTACGACTGCTGATTCTTCTACAATTAACGTTGCAGGATCAGTAACATCGAATATAAGGAAATCAGCCGCGGAATACCAGAGAGAGTGTCGAGCACGTAAAAAAGCCAAACATAACAATATACTCATTGATTCGCTAGCTGTAATTCCATCGACTTCGGCGGGGGGATTTACTACCACTCATCAATCGACTATAGTAGACCAATTAACAACTGCTGGGCCTTCTATTAATCCAAAAACGACTGCTGAGCCTTCCGTTAATCCACAAACGACTGCTGAGCCTTATATTAACCCACCAAAGACTGCTGGGCCTTCGACGAGTACTGATATTGGTTTTCCAAAGCCAACAAGGAGGAAAACACACGCAGAATTTCAGCGAGAATATAGAGCAAGGAAAAAAGCTCAACGGGAATCTATAAGGGCTGCGAAAACCAACGACGGTTCAATGGTGATTGCTGATGAAAATACCACCAATATTGGTCCCGAAACATCATCAGTTGATGATAAAGACAACGAAGTAGAACAGCCTAAAAGTAAGGAACCTGAGAACAAGCCCACAATGAACTTCCTAGATAACATAAAGGCTAGGAAACGAAACGTTGCTCTACTACTAGAATTTACTAAAATATGTCCATTTAGATGGATGAAGAACTTATACTTGTGCTTTTATTGTGAAAAACAATTCACCGATCCCGCCAAACTTCGAAATCATAACAACACGATTCATCACTCTTTGACGACTTACGACATCAAATATGTCTTGTCGAAAGTAAAGAAATATGAGCTAATTAAAGTGGATATAACGAAGACTGCCTGCAAGCTTTGCAATGAAGATCAACACGATTTAACCGCATTGAAGATGCATATTATAAACACACACGACAAATATATAGATTTAAGGTCGAGCGATGGCGTACTACCATTTAGAGTATCACGATTCGAATTCCAATGCGCGTTATGCGATGAGAAATATGAAGATTTCAAATCATTGAACCACCACATGAATATACACTTCCAGAATTTTATCTGCGAGCAATGTGGAGCAGGATTTATTACGCCTGAACGTTTGAGGACACATGGGTTCTCGCATGAGACTGGATCGTTTACTTGTGACGACTGCGGTAAAGTATTTCGATCATCAAATTCACAGAAGGAACATTACGCCACTGTCCATATGATGGTCAAACGTCACCGGTGTCCAGAATGTCCGGAATCTTTTAGGAATTACTTCCAGAGAAATAAACACGTGTCTGCGGTTCATGGAGTCAAATTGAAAGAGTACAAATGCACTTTGTGTCCTAAGGTGTTCACTTTAAGCGGAACCGACTCGTCATTAAATGAGGACACAAAGAAGCCGCCACAAAGAATAGTGCCGCTTTTCCAAGTTGCCTACGATCGCAGCTTATGTAGACCTCTGGGAACCGTTCTGGACTTCAGTAAATTAAATAAACTCAAAATTAATATGTCAAATACTAGCCTGCTACCTAAAACATCGAGAAACTTTACACCCTCTCGCAGCCCATCACCGCTATCACCTGCCGACTCTCCCATACTTTACATACAAGAAGACACAACCCGGCCCGTAGAGTTCGTCCTTAAACCAAAGAAACAGCAGAAAACCCCAGACGTAAGGCAAAACGCTCTGACAGTATTTGAGTTCTCAACTATCTACCCCTTTGTGTACAGTAATAATAAGTTCAAATGTTTCGTATGCTGCCAACCTTTCTTTGACACGACTCTTCTCAGAGAGCATATGGCGGAGGCACACACGTTCACAGCTCTAAAAAGACTCGTCAATAATAAAAGGGAAAATGTATTGAAAGTTGACATTAGTGATATAATGTGTAAGATCTGCTCTCTGAAGCCAAAAGATTTAGTCGAGATGAAGGAGCATTTACAAAAAATACACGAGAAACCAATCGATCCTGAATTGCACGACAATATAATTCCTTTCAACTTGCAAGCCGTCGATGGTTCGCACAAATGCGTTATATGTAACGAGACCTTTATCAAAGTTAGGGTATTGGTGATACATATGAGCGTACACTTCAACAACTACAGTTGCGAGTTCTGCGGATCGGGATTCATGACTTTACGCCTCCTGAAGAAGCATTTGGAAGTCCACGAGAACGGCAACTTTCCCTGCGACAGGTGCAACAAAGTTTTTAATACACCGTACAAGAGAACACTCCACGTCAGAGGTGTGCACCTGAAGCAGTATCCGCGAAGATGTCCCTTATGTCCCGAAAGATTCAACTCGAACTACAAGCGGACTATCCACCTGCAAGATGTACATAATCAATCGACCAGGGTGCACAAGTGCGAGACTTGTGGACGCGCGTTTAACCTCAAATATCATCTGATTTGTCACACGCGTTCAGTACATTTGCAAGAGCGGAATCAGCAATGCGATGTTTGCTATCAGAGATTCTGTAACAAAGAGTCGTTGAAGCGTCACATGGTCATACACACTGGCGAAAAGAACCATAAGTGCGAAGTGTGTGGTATGGCCTTTTTGCGACGAATCATCGAAGAAACACAGTCATCCATTATACTGAAAGATGAAGACGGATTGGATTTAAAACTAACAGTTCTCAAAACTCCTATATCCCTAGATAACCTTGAATATGAACATGAAGCTGAAACGAAGCGTAAAAAGAAATATAATGCAACAAGAAAACTGAAAAAAGTTGCAAACGAAACCGCAAATGACAACGATCCTACGTTATCAAATATTGCCGTTTTAAAAGAACCAATATCCCTCGATGCTATTAAATACGAAGATGAATTTAAATCTTCAATAACTTTTAACGTCAAAACTGTACAAGGTACTTTCCTATGCGGACAGTTACGAAGAACTAAAGGAGACGAAATCTGGAAGCAAAACGCTTTGACAATCTTCGAGCACTCATTTGTTTATCCATTTATTCACGCAAGCAATAAGTACAAATGCTTCATATGTGCCAAATCGTTTCTCAATGCAAATCTACTGAAAGATCACGCAAATAATGACCACACGGCTAAAGAAATGAGAAAAGAAATAAACAACAGGGTTAGAGATAAAAATTTAAAAGTCGATGTCACACAGTTGCAGTGTAAACTGTGCTTGGAAATATTAGGAAACTTACAAACCCTGAAAGAACATTTAAAAGGACACGGGAAAGCGATGGATCTGGATCATCAGGATAATCTCGTGCCTTTCAACTTAGGTGGCACGTCTTTTGCATGCCAAATTTGCGGCGAAACTTATCTCAAATTGAGACTTCTCATAATTCACATGAGTAAACATTTTAATAATTTCAGCTGTGAAATATGCGGATCTGTATTTATTTCTATGAATTTATTGAAGCGCCATCTTCAAACTCATGAATCTGGAAGCTTCCCCTGTGATAAATGTGACAAAATTTTTAGTAATTCAGCGAAAAAGACTTTGCATATGCGTGGGGTTCATTTGAAACAGTTTCCGAGAAGGTGTCCCATCTGCCCTGAGAGATTTAACTCTGATTATCAAAGAACGAAACATTTGAGGATTGTTCATAATCAGACAACAGGGCTTTTTAGGTGTGAGACTTGCGGGCGAGAGTATGACCTGAAATACCATCTCTTGATACATATCAGATCCGTACATCTGCAAGAGAGGAACCAGGAATGTCCCATCTGTCATTCTAGATTCTTCTCGAAATACTGTTTATCCAGACATATGGTTATTCATACGGGGGAGAAAAATTTCAAATGTGAAATTTGTGGCAAGGCCTATGCTAGGAGGAAGAATTTGAGAGAGCATTCTCGTTCTCATGAGGTTGGCCAAACTGTTTGTTCGGTGTGTGGACAGAATTGTGTGGACCACGTGGGTCTGGTCGCGCATGTGAGCGCTGCACATAGCACCCTGTAA
- Protein Sequence
- MSGQTDRSVRLLGRDDQATTSTSTGSRGPRGKNAQYYRDYRARKRAELEKELLNRTSDPSTTADSSTINVAGSVTSNIRKSAAEYQRECRARKKAKHNNILIDSLAVIPSTSAGGFTTTHQSTIVDQLTTAGPSINPKTTAEPSVNPQTTAEPYINPPKTAGPSTSTDIGFPKPTRRKTHAEFQREYRARKKAQRESIRAAKTNDGSMVIADENTTNIGPETSSVDDKDNEVEQPKSKEPENKPTMNFLDNIKARKRNVALLLEFTKICPFRWMKNLYLCFYCEKQFTDPAKLRNHNNTIHHSLTTYDIKYVLSKVKKYELIKVDITKTACKLCNEDQHDLTALKMHIINTHDKYIDLRSSDGVLPFRVSRFEFQCALCDEKYEDFKSLNHHMNIHFQNFICEQCGAGFITPERLRTHGFSHETGSFTCDDCGKVFRSSNSQKEHYATVHMMVKRHRCPECPESFRNYFQRNKHVSAVHGVKLKEYKCTLCPKVFTLSGTDSSLNEDTKKPPQRIVPLFQVAYDRSLCRPLGTVLDFSKLNKLKINMSNTSLLPKTSRNFTPSRSPSPLSPADSPILYIQEDTTRPVEFVLKPKKQQKTPDVRQNALTVFEFSTIYPFVYSNNKFKCFVCCQPFFDTTLLREHMAEAHTFTALKRLVNNKRENVLKVDISDIMCKICSLKPKDLVEMKEHLQKIHEKPIDPELHDNIIPFNLQAVDGSHKCVICNETFIKVRVLVIHMSVHFNNYSCEFCGSGFMTLRLLKKHLEVHENGNFPCDRCNKVFNTPYKRTLHVRGVHLKQYPRRCPLCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDVCYQRFCNKESLKRHMVIHTGEKNHKCEVCGMAFLRRIIEETQSSIILKDEDGLDLKLTVLKTPISLDNLEYEHEAETKRKKKYNATRKLKKVANETANDNDPTLSNIAVLKEPISLDAIKYEDEFKSSITFNVKTVQGTFLCGQLRRTKGDEIWKQNALTIFEHSFVYPFIHASNKYKCFICAKSFLNANLLKDHANNDHTAKEMRKEINNRVRDKNLKVDVTQLQCKLCLEILGNLQTLKEHLKGHGKAMDLDHQDNLVPFNLGGTSFACQICGETYLKLRLLIIHMSKHFNNFSCEICGSVFISMNLLKRHLQTHESGSFPCDKCDKIFSNSAKKTLHMRGVHLKQFPRRCPICPERFNSDYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLIHIRSVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCEICGKAYARRKNLREHSRSHEVGQTVCSVCGQNCVDHVGLVAHVSAAHSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -