Hlab003726.1
Basic Information
- Insect
- Habropoda laboriosa
- Gene Symbol
- -
- Assembly
- GCA_001263275.1
- Location
- NW:644942-649040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.62 35 4.3 5.7 2 23 243 265 242 265 0.96 2 16 0.017 0.97 9.2 1.9 1 23 315 337 315 337 0.97 3 16 0.096 5.4 6.8 1.5 1 23 386 408 386 408 0.98 4 16 0.012 0.7 9.6 0.2 1 20 463 482 463 484 0.94 5 16 4.2 2.4e+02 1.7 0.7 1 10 496 505 496 519 0.75 6 16 0.0036 0.2 11.3 1.2 1 23 524 546 524 546 0.98 7 16 0.00081 0.046 13.4 0.2 1 23 589 611 589 611 0.97 8 16 4.8e-05 0.0027 17.2 0.3 1 23 616 638 616 638 0.96 9 16 0.19 11 5.9 0.2 1 20 692 711 692 711 0.96 10 16 0.00036 0.02 14.5 0.2 2 23 731 752 730 752 0.96 11 16 7.6e-05 0.0043 16.6 0.9 1 23 766 788 766 788 0.97 12 16 0.00088 0.05 13.2 2.3 3 23 812 833 811 833 0.95 13 16 0.013 0.76 9.5 1.8 2 23 886 908 885 908 0.93 14 16 0.003 0.17 11.6 0.7 1 23 935 958 935 958 0.93 15 16 0.12 6.7 6.5 1.2 1 23 970 993 970 993 0.96 16 16 0.098 5.6 6.8 0.7 2 23 1023 1045 1023 1045 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGTGGAGTTGCAGGACATGGAAAACGTGTGCAGGCTTTGCCTGTCCACCGATGATCCGAAGTCGTCGGTGTTCGGAGGGCAAGACTCTCCGGTTTCGTTGGCCAGTAAGATACAAGCTTGCTTGTCAATACAGATTTTAACCACGGATAAGTTATCCACACAAATATGTGAGCAATGTGTTAGAAATGTGAATGAGTGGCATGATTATAAGGAAGCATGTCTTCGTTCCCAAGACAAATTACACGAATGGTTTGAAAGCCATTTACGAACAAGTCCAACGGTTGTAACTATTAAGAATGAACCAGTTGATTTAGACTTTTGTGAAGATAACATTGAGGTACTTTCAGAATCTACCAATGATTCAGACATGgAATCCACAAATCTTGTAGAGAATATAAATCATTTAGCAATCAGTAATCAAGTTCAGGAATTAACTGATGATGAAATAATATCAGAGGGAGATCAACCGGTATTGACAAAAGAGATGGACATGTGTGTAAAAGCAGAACCACCAGAGGACTATGACACAGACTGTACGATAGAAATAGAATCTGTTACTGGTAGTGAACTTTTGTTGAATCCCCTCTCAACTCAGGAGGATAGGATTATGGAAGCTGATTCTACGCAAAAGTCCAATGCATCTGGATCAGCAAGCAAGAAAAAAGTCAGAAGGGGTCCGCACACACATTTCCGGGGGGCACGCGTTTTCAAACAGAAATGTGTGCACTGTCAAATCAATTTACATTCTAAATATACCTACACAAAACATATGGAAAGATTTCACAGTGACAAACAGAATGGTGATGTCAATAATTTGGAGTTGCAAGACGACGAGGAACACGTTGAAGATTTGGAGGACGAATTAATGACCATGGAAAAAGATGCTCCGTTGACGCAAGTACAGCAAAATATTATCAGTCAGTTGAAAACATTCTCGTGTTACTCTTGTCAGCAATCCTTCGTCGACCGTAGAAGTACGCTATCGCATATTCGTCAGCATATGCCAGATCTAAGACCATACACATGTATCGCATGTTTAACGGAATTCCCGGATCGCTCGATGTATAAACTACACTGTGGAGCGTCGTTTGAATGTGCAATGAAGATTGCACTGGTGATACCGAAACACGGCGAAGAGAAGTACTTCACGTGTAATATGTGCTTGCGTTCTATGCAAAACAGACAGCAATTGCTTAGCCATCTGTTGAAACACTCGGATAAACAGTACGAAGAATTGGTATCACCATCGAGATCTCCTCCTAAGCTAAAGGCAATGACTCCTCTGCCACCTGCCAAGCAGGAAGTAACAAAGAAATCGCTTGAACCAATTAGGGTCATACCTCGCCCGTACAAGAATGGCGATCCTGCGCATAATCATGTGTGCGACTTGTGCGGTATGATCTATAGGTACAAACCCAATATGTTAAAGCATAGAGACTTGTGTCAACGTTTGCTACCCGAGGTACGAACATCCTACAAATGCGTTCTTTGCGGTATGACGTATCTCATCTTCACAAAGTTCCAGAATCATGTTACACAGAGTCACAAGAAGAAGGTCTACACGTGTTCTGAATGTTGGGGCAAGTTTAGATCTCCCAACGATTACTTGGAGCATCATGAGACGCATCGTAATAAGACGAAGTCCAACGACAAGAATGATTCCAAATCCATGCAGAGCATCTCGACACCTATCCGGGACTGGGACACGTTCGAGGCTGAAATGAACACGGTCAGGCTGTCGGACAGTAAAGGATACAGTTGCGCCCTTTGCAACCTAGAATTCGCTACTAGAACCGAGCTAATGGAGCACAGAAATCTTCATTTGAAGGCTGGCCACAAGTGCGACATCTGCGGCAAGGAGTTCGCTGAGGAAGCATCACTGAAGATACACAGGAGCTGGCACAGTCGGTTGAACTCTCGATTCAATACGCAACACTTGATGAACGAGGACCAGAAACCAATGATCTCGCCCAAAAAGGAAGTATTTAACACAAATACAGGCCGTCCGGCTAGAGCGCGAAAATCCTTCCCGAATCCACCTCCCACAAAGCCTACTGGCAATTTCCAATGCCAGGTCTGCAGTGACAAGTTCAACGACGTGACAGAGCTGAGGGAACACTTGTGGGACGTGCACTGTGCCCGCAACAAGGCTGAGAAGAATTTCTCAGGTAACGAACTTCAATGTGAGCTCTGCACGAACGTGTTCTCCGACAGGGAGACGTTAAACATTCACCTACAGTGGCACAAGGCTCATCCCATCCTCAGCGATATCAGGAAATCAAGATTCCCCTGTGAGATCTGCGGGAAGCTGTACAGCTCCAAGAAGGTACTAACGAGACACAAGAAACTCCACAAAGCTACTGCAGTTGCAGTCACGAAGTTCCAGTCGGTAGTCAAGAATTCTGGGAGCAGCCAGGCCTTGTGCAGCATCTGTCACAAATTGTTCAGCAGCAACCAGGCGCTGCAACGTCACAAGTTGAATCTGCACGGCAACATATTCACTCAGAGGCCACAATCGGTATACAACAGCACGAGAAGAATGACCCAGGAGGAGCAGCATAGGCCCAAGAGGGTGAAGCAAGAGTTACTGGAAGAGCAGAAACCATACGCCATGGACGCGATGAACGCTGGCAAGAAGTCGGTGATGTGTCACGTATGCAGAAAATTCTTCGCCAACATGAGCGTGCTGTACAAGCATAAGCAGCTGATGCACAACAAATCTAACCTGATGAAGAACCACGCGAAGATCTCAATGAACGAGTGCGTGCCAATTCCAAGCACCGATGGCACGTACTCCTGCAACATCTGCTACAAGAAGTTCCCTGGCGTGCCCAATCTGCGTCAGCATTTCACCGTCAAGCACAAAAACCTTCCGCCCAAGTTCACCAGCATGATCTTCAGCTGCACACTGTGCGACAGACACATGTTCAACAGACCTGCGATGTCGAATCACATGTTGACGGCACACAACACCGTCTACGACGCGCACAACAGTACCAACTTCCACAGGGAGATGGATTTGAACTCGTACACGGTGGAGGGTGCGGTTGGTGCTGTTTGCCCACGATGCAAAGTCAAGTATCCCAACAACAAAGCTATGAAGATTCACTACTTCAAATTCCACGAAGGCTCAGACCTGTAA
- Protein Sequence
- MDEVVELQDMENVCRLCLSTDDPKSSVFGGQDSPVSLASKIQACLSIQILTTDKLSTQICEQCVRNVNEWHDYKEACLRSQDKLHEWFESHLRTSPTVVTIKNEPVDLDFCEDNIEVLSESTNDSDMESTNLVENINHLAISNQVQELTDDEIISEGDQPVLTKEMDMCVKAEPPEDYDTDCTIEIESVTGSELLLNPLSTQEDRIMEADSTQKSNASGSASKKKVRRGPHTHFRGARVFKQKCVHCQINLHSKYTYTKHMERFHSDKQNGDVNNLELQDDEEHVEDLEDELMTMEKDAPLTQVQQNIISQLKTFSCYSCQQSFVDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPKHGEEKYFTCNMCLRSMQNRQQLLSHLLKHSDKQYEELVSPSRSPPKLKAMTPLPPAKQEVTKKSLEPIRVIPRPYKNGDPAHNHVCDLCGMIYRYKPNMLKHRDLCQRLLPEVRTSYKCVLCGMTYLIFTKFQNHVTQSHKKKVYTCSECWGKFRSPNDYLEHHETHRNKTKSNDKNDSKSMQSISTPIRDWDTFEAEMNTVRLSDSKGYSCALCNLEFATRTELMEHRNLHLKAGHKCDICGKEFAEEASLKIHRSWHSRLNSRFNTQHLMNEDQKPMISPKKEVFNTNTGRPARARKSFPNPPPTKPTGNFQCQVCSDKFNDVTELREHLWDVHCARNKAEKNFSGNELQCELCTNVFSDRETLNIHLQWHKAHPILSDIRKSRFPCEICGKLYSSKKVLTRHKKLHKATAVAVTKFQSVVKNSGSSQALCSICHKLFSSNQALQRHKLNLHGNIFTQRPQSVYNSTRRMTQEEQHRPKRVKQELLEEQKPYAMDAMNAGKKSVMCHVCRKFFANMSVLYKHKQLMHNKSNLMKNHAKISMNECVPIPSTDGTYSCNICYKKFPGVPNLRQHFTVKHKNLPPKFTSMIFSCTLCDRHMFNRPAMSNHMLTAHNTVYDAHNSTNFHREMDLNSYTVEGAVGAVCPRCKVKYPNNKAMKIHYFKFHEGSDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -