Basic Information

Insect: Habropoda laboriosa
Gene Symbol: -
Assembly: GCA_001263275.1
Location: NW:590785-658018[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 9.1e-05 0.0051 16.3 0.9 2 23 216 237 215 237 0.91

2 6 2e-05 0.0011 18.4 0.4 1 23 243 265 243 265 0.97

3 6 7.1e-06 0.0004 19.8 2.3 1 23 271 293 271 293 0.99

4 6 2.2e-05 0.0012 18.3 4.4 1 23 299 321 299 321 0.97

5 6 0.0014 0.077 12.6 1.5 1 21 327 347 327 350 0.85

6 6 2.5e-05 0.0014 18.1 0.5 1 23 358 381 358 381 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	9.1e-05	0.0051	16.3	0.9	2	23	216	237	215	237	0.91
2	6	2e-05	0.0011	18.4	0.4	1	23	243	265	243	265	0.97
3	6	7.1e-06	0.0004	19.8	2.3	1	23	271	293	271	293	0.99
4	6	2.2e-05	0.0012	18.3	4.4	1	23	299	321	299	321	0.97
5	6	0.0014	0.077	12.6	1.5	1	21	327	347	327	350	0.85
6	6	2.5e-05	0.0014	18.1	0.5	1	23	358	381	358	381	0.92

Sequence Information

Coding Sequence: ATGAGGATAGCAATAGGGAAGACAGACAAGGAAAGTAATagatTCGTCCGGGAATCTGCACTTACAATCGATCACATTTGCGGTATTACAGCTTACTGTGAATGGAGAGCCGTGAATGCCATTTCGAAATCATTGCCGATCTAGCAGAGCCAGAGAAGCGGTTCTAATGCTCTTAGGAGAACGACACAAAGTGAAAGGTGTTTAGGGGAGACCCAGTACGAGGATACGCAGGTGCAATTCACTCGTCCCATTCCGGATGAAGTAATCAGTGTTTATGAAGTGTACGTGAAAGAAGAAGCTGCAAATTCTGAAGGGAGGAATGATGTCACTGTTGTACCGAGTTTACCATCCACAAATGATCATCAATTAATTCAAAATGATTGCATGAACCTAGATGTTGCTATAGATTCTGACGTGATTAATATCGATGGTGCTGTGACGAAGTTTCTTGGTAAAGATGCTTTCAAATATAAGATTCTTGATCAAAATGTTAATTCATCCGAAGACAATGTTATGGTGTATTCGCACCCGGTTGTCGACGGGCCCTCATCGTCCAATACACGTTTGATCGATAAAGATGATCCTAGATCGAAACTtcatttcgtgaaatatttgaagagaGATGGGAAGACgctgaaaatttgggaatgcGGAATCTGTTCGAAGGAGTTCCGGCATCAGTACACGTTGATGAGACATTTACCAACGCACACCGACGAGAGGAACTTCAAATGCGAAGCTTGCGGCAAAGCTTTTCGCCAGTTGTCGACACTGAGCCAGCACAAGGCGATACACAGTGACGCTAGACCGTACGTTTGCGAATTTTGCAAGAAAACTTTCAACAGAGTGTCCACGCTGATCTCTCATCGGAAAACACATTCGGAGCATAAACCgcacaagtgtcaggtttgtGGGAAGGGATTCCATCAGAAGGGCAATTTGAGGAACCACGTGTTTACCCATACGAACGAGAGGCCGTACAAATGCGAGCTTTGCGGCAAAGGCTTCAATCAAATGTCGAATTTGGTCTGCCACAAGGTCAAAGCGCATGCACACGCGGAGAAAATGCAGTACGTGTGCGGAATCTGTGGCAAAGAGTTTCCGCGTCGATTCTCTTTGAGATCGCACGAGGAGTACAAGCACGGCATCAAGTATCGACATCCGGCCGGCGTTCAGCCGAGCATCAACGATCCGAACGTCATAAGAAAtAAGAACGTCAGGATCGTGCAGCTGCCTAACGGCGATCGAAACCAAACGTTCGATCTTAGGGACAAGGATCCTCTGCTAACGTCGGACGTCATGGAGTCTGTAGTGGTAGACAAGATCGACACAAAGGCGATGGAGATGGCCCTCCTCGAAGGACAAACGCCGTTCGCCCTGTTCAAACCAGCCAAAGGAATTCCTGTTCTCGTAAAAGTCTCGCCTACTGGAACTCataaaaacATTCTAACACCTGCCACAGCTGACGATCTTCGTATGGCGGGGAAAATGAGCCTGAGCCCAACAATTTTAGCTGACGCCGACAGGATCAAGGCTGTCCAGGTGAAAGTACCTGTCGTAGCCACTGTAATTCAGAATGTAGATCCTGATGGGAAAGTGAATTTCATTATCGAACCGCCTGGTCCTGAGAACGAACACGAGAGCCTGGTCACAGCATTGGACTCTCAGTTCACGTACACCGAGCCGGTTAGAAACGAGCTCGATCGTCAGAATGGTCCTGTTGTGTCCTCCGCGATGGAGGATTGCAACGAGCTGCTGGAACTCGCCGCGCAGGATGACATACAGTTTGTTCGCGCGACTGAGGATGGCCGCTACGAGGTGATAACGAATAGCGAGGCACGTGATCTGATGGTACAGAACTCGCATGACGTGACGATCTTCAGCGAGGAAGCGGACGCGATCAATGTGGTGAATATGCGCGGTAACGGGGAAGTCATCATCGGGGATTCCGATAATCAGATCATGGTGCTCGACTCCGCCTCCTCCCAGAAATCTATGCCGATGGACGGCATCGAGATCCTGGAGGACAAGGACATCCGGATTCTCGACAGCAAGAGCCTCGACGACCGCTTCGTGGACGGTATTAGTTTCCTCCCGCAATCGAAAATCGACGATCTGATCTTAGGCCCGAAACCTTTGTCCCTCGACGCTGGAGTTTCTGTCAGCGAGCATGACGACGAAGTTATAGGAGTGCCTTCGAGTCAGCAAGAGCTAACAAGCATCCTCAGCCATCGAAGCGATATTTCGACACTCTCAACCACCTCCCAGCCCTCGATATCCTCCCTTCTAATGAAAAGCCACCCACCGTTGTCAATCTTAAACGAAACACTTCCCTACCTGAAGAGCAATACGAGCTTGGCAGAAGACCTCAACATGTTCAGTAATTCTACAACGGACAGTCATTCCATGTACGAATCAAAGATCAAATTACCTTCAGTCTTCGACGATACCGAACCGGATGCTGGCTTAATTCCCATCAGTCAAGCAGACATGAAGATTCTAGGATCAGGGAGCTCGAGCACCAAGGTTTTCTGCAACAAGACGAATTGTTTGCCGTCCTCGAAGTTATTCTCTGGATTGGGCGAGGTGAAGATTCTAGGCCCGAAGAATCACAGCCAGGAGATCATGACCTCGCAGTATCAGGACGTGAAGTTACTTACATCGTACGAGCAGTTTTTAAAGAACACCGCCGCGAACACGAATGGCTGCGACGGAAGCGGGGTGAATACTTCCGGCGGATGCAGGCAGGAGGTGAAGATTCTGGGGAAGAAGTTGGGAACTGGCATTATTACCAGCACCGTGGAGGGCAACGTCGTGGAAGTCATCGAGGAGAAAACTAAGCTGatcATGGATCACGGGCTGTGCAGCGGCATGGACAACACGGTGATTTCATCGCCTCGCCTGGACAGGCAGATGACGGAAAACGGCGGGCCGGACAGCTTCCTGCTTCAAGCCTGTAGCCCGTGCAGCTCGGACTTTTTGAATTTCGAGAACCGTCTGAAAGACACGTCGCCGGCTGGTCATTTCGATAGAAGCCAAAAGGATTCCAGGGACAGCTTCGTCTCCGGCGGCGGTTTGCCCGATCTCGATTGA
Protein Sequence: MRIAIGKTDKESNRFVRESALTIDHICGITAYCEWRAVNAISKSLPI*QSQRSGSNALRRTTQSERCLGETQYEDTQVQFTRPIPDEVISVYEVYVKEEAANSEGRNDVTVVPSLPSTNDHQLIQNDCMNLDVAIDSDVINIDGAVTKFLGKDAFKYKILDQNVNSSEDNVMVYSHPVVDGPSSSNTRLIDKDDPRSKLHFVKYLKRDGKTLKIWECGICSKEFRHQYTLMRHLPTHTDERNFKCEACGKAFRQLSTLSQHKAIHSDARPYVCEFCKKTFNRVSTLISHRKTHSEHKPHKCQVCGKGFHQKGNLRNHVFTHTNERPYKCELCGKGFNQMSNLVCHKVKAHAHAEKMQYVCGICGKEFPRRFSLRSHEEYKHGIKYRHPAGVQPSINDPNVIRNKNVRIVQLPNGDRNQTFDLRDKDPLLTSDVMESVVVDKIDTKAMEMALLEGQTPFALFKPAKGIPVLVKVSPTGTHKNILTPATADDLRMAGKMSLSPTILADADRIKAVQVKVPVVATVIQNVDPDGKVNFIIEPPGPENEHESLVTALDSQFTYTEPVRNELDRQNGPVVSSAMEDCNELLELAAQDDIQFVRATEDGRYEVITNSEARDLMVQNSHDVTIFSEEADAINVVNMRGNGEVIIGDSDNQIMVLDSASSQKSMPMDGIEILEDKDIRILDSKSLDDRFVDGISFLPQSKIDDLILGPKPLSLDAGVSVSEHDDEVIGVPSSQQELTSILSHRSDISTLSTTSQPSISSLLMKSHPPLSILNETLPYLKSNTSLAEDLNMFSNSTTDSHSMYESKIKLPSVFDDTEPDAGLIPISQADMKILGSGSSSTKVFCNKTNCLPSSKLFSGLGEVKILGPKNHSQEIMTSQYQDVKLLTSYEQFLKNTAANTNGCDGSGVNTSGGCRQEVKILGKKLGTGIITSTVEGNVVEVIEEKTKLIMDHGLCSGMDNTVISSPRLDRQMTENGGPDSFLLQACSPCSSDFLNFENRLKDTSPAGHFDRSQKDSRDSFVSGGGLPDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01169399;
90% Identity: iTF_00118230;
80% Identity: -