Hlab001811.1
Basic Information
- Insect
- Habropoda laboriosa
- Gene Symbol
- -
- Assembly
- GCA_001263275.1
- Location
- NW:1350647-1356735[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.6 90 3.0 0.0 2 20 115 133 114 135 0.92 2 23 0.00024 0.014 15.0 1.6 1 21 140 160 140 161 0.92 3 23 0.042 2.4 8.0 3.2 1 23 176 199 176 199 0.93 4 23 0.013 0.73 9.6 1.8 1 23 528 551 528 551 0.92 5 23 0.25 14 5.5 0.2 5 20 558 573 557 577 0.91 6 23 0.035 2 8.2 1.8 2 23 584 605 583 605 0.94 7 23 4 2.3e+02 1.7 2.4 1 21 632 652 632 653 0.86 8 23 0.00019 0.011 15.4 1.5 1 22 747 768 747 768 0.96 9 23 3.3e-05 0.0019 17.7 0.2 2 23 776 798 776 798 0.94 10 23 0.00071 0.041 13.5 1.8 1 23 808 831 808 831 0.95 11 23 1.8 1e+02 2.8 0.1 3 19 850 866 848 869 0.88 12 23 0.38 21 5.0 4.3 1 23 876 899 876 899 0.95 13 23 0.0021 0.12 12.0 1.6 1 19 910 928 910 929 0.97 14 23 0.03 1.7 8.4 0.3 3 19 975 991 973 993 0.94 15 23 1.4 81 3.1 8.9 1 23 1001 1024 1001 1024 0.95 16 23 2.2 1.2e+02 2.6 0.5 1 13 1033 1045 1033 1049 0.89 17 23 0.0015 0.083 12.5 0.2 1 20 1086 1105 1086 1107 0.94 18 23 0.0043 0.24 11.1 5.7 1 23 1114 1136 1114 1136 0.97 19 23 0.38 21 5.0 2.9 1 23 1146 1169 1146 1169 0.93 20 23 4.1e-05 0.0023 17.5 0.3 3 21 1227 1245 1225 1246 0.93 21 23 0.071 4.1 7.2 1.2 1 23 1253 1275 1253 1275 0.82 22 23 0.3 17 5.3 1.2 1 23 1285 1308 1285 1308 0.89 23 23 0.0015 0.083 12.5 0.7 2 23 1390 1412 1389 1412 0.96
Sequence Information
- Coding Sequence
- ATGGCTCGTGCCATCATCTACAAGCGGTCCGTAGATGCAGTGCTGGTAGACATACAGCTTGACAAACTAGATccGTCTAATCATGGGATAAAGATAAAGGAAGAACCGTTCGATCCAGATATCCTTACTCATGACGATTCTTCTTCGATGAGTAAAAATGGAGAAGATCAAAGTAGGATAGCAACGCCTGAAGATGAGTCTTCAGATGTTGTTAATTTTACAGAAGGTAAACAGGTGTCAGCTGCGAAATCGAGTTCGAAAGTCATAGAATTAAGAAGTTGTTCACTTTTCGAGAGGAACAGAAGAAGTGAATTGGAACGTATGAAAAAACGTCAGAGAGTAGTTTGCAATGTTTGTTTGGTATCGTTTGAAAAAGCACGCGGCTTAGTAATGCATAGGTTGTTTTTAAGTAGACCGTTCATGTGCGACAATTGCCACAAGTCGTTCACCTCGCAAACGAACTATGCCCTTCATAAGATTACCTATCAGAGCAGTTGCGGAGGCGGACCCGGTCCGAAGCCTCGTTACGTTTGCAACTTTTGCGAGCGAGGATTTTTCCGCAGAAGCCTTATCCAGTCTCATTTGTTTCATCAACACGGAGACGCGATACACGGTGGTCGATTCAATCCTGGGAACATCGTGGAACATGCGTCGATGGAAAATGTTAACGAGGATTCGGTGGACACTGGTTCTGAAATGTCGAAGGATTCAACGTCGACGAAATGGATTAGCACGCCAACGATGACGGTgaacaatttgaaatattcggaGAACACGCCTAGGAAAAAGTTGAACAGTCCACTGTCGAGAAATCTAATCAAGTCCTGCGGCACGCCCTCGAAAAAGATGAAACAGACCACTCTTACGGACTTCATTTCGTTCTGCAACGCCACCGTGAAGAACGAACGTTCTACACCAGAGAATCTCACCGATTTAGAGAATATTTCTGGTCGACGACCGGAAACACCCGACGAATTCGAAAACGATTCGTCGAAACTTCTGAAGGACATTGAAATGTCCACACCGGTTAAATGTCCCGAAACTGATATGCTCGATAGTAAAAAACCGTTTGTTCGAATACACATGTATCCAAACCTAATAATGTCATTTCTAAGCAAGAATATAACGAGTCCTACAACTCCTACTACTTCACGGAGTACTCCTTACAATTTCAGGCAAACCAGAGCCGGTTCTAACAATTCAACTGATCCCGAATCTCCTAAGAGTGCAAGagaatctcgtaaaagaaaaagaaacgctaAGAAAGAAGCATTGTTTTCGCTAGAGAAAAAGATCAGGACTACGTGTAAAGATTGTGCGATTTATCTGGAAAGATGCGATAAAGTTGCGAAGACTAACGTGTCGCAGAGCGTTTCTCAACAAGTAGAATCAGAAAGAGTGGAAGAAAATTCCGAAGAGGTACAGAAAACGAATCTAGAAGGCGACGCATCGTTGAAAGCTATAGAAACTCCATCGGCGGGATCGTCTACGGTGATAAAGCCTTGTAAGAATGAGCCAACGACAGCTGAACAACAGTCAGATTTGCACGAGAAAGAAGTGAAGCCTAAATTGGTAAGAATGTTTCGTTGCAATCTCTGCGACAAGTTCTTCCTGTCACAGGAGAACATGCGCGAGCACAAAGAACTGTTCCACGTGATCTACATGTCGAGCATATGCAACGCGCGTTTCAAGACCATGAGCCTGCTGTTGCGCCATTACTGGCGGCAGCATCTCATCCCCATGCATAAGAAATGCTGCGTGTGCGACGAGAAATTCGACAGCACGATACTGCTGAAGCAACACTTGGTGTTACATTGCGTGAAAACCGTGCAGTCCAAGAAAGACACTCTACCGGTCGACATCGAACCACTCTGCAACGTGTTCAAGAAGCGCCATCGATGCAAAGGTTGCCTAAAACGATTTTGGTTGAAAGTGTGTTTGACGCAGCACGAGAAGGTGTGTCGTCGAATGAAAACCAGGACGACTGACAAACAGCCAAGATCTTCGTCGGTCTCGATAGAGAAAGATAACGAGAAATCTAGCTCGGTGGTCGATAAAAAACAAGCTCCCAGTGTTCCACCGAACGAGCAACCGGCGGTTAGTCCGAATGGAAATACGCAATATCGTTCTAAAATCGACATTTTCCCGTTAGAATCGCATAACGTGGTGAACAAAAGGCTGATCAACGGTATGGCGTACGCGAAGGGTTACCAAGTAAACGCTCAAAACGACGCGGTCTTTCCCTGCACTATCTGCGACAAACAGTTCCGCACGTTCCCCAATCTTTGTATGCACGAGCGTACCTTCTGCAAACCTCTAATTAACCGGTGTAACACTTGCGGTACCGCGTTCCCCACTAAGAAACTACTGCAGATTCACATGCTCGCGGCTCACACAGCTTCGAATGCCGGGCATTACAAGTTCATCTGTCAATACTGTAACCAAGGTTTCGTGAAAAGGATGAACCTTCAGATACACGAGCGACACTTGCACGTTAATACGAAAGTGCTGCAAAATACCGATCGTATCTTCAGCGTGCACACCATATGCAGCGTGTGCAATCTGATGTTCGAGTCCTACGAACGTTTCGTCCAGCATAACATGTACTATTACCAGGGGCAAACGTTCGCGTGCACGTTTTGCTCGGAGTCCTTCCAAGGTATGTATCTGCTTCATCATCACTACAAGGTGACGCATCGTCCGGACAACAAACGACAGTCGTACATTTACACGTGCGACGTTTGCAACGAGATGTTCTCCTACGATTCCCATTTGCACGCGCATAAATGGCACGTTCACCTGCACAACGAGCCCTCTGTGCAGAACACTTTGAACACCATGCAAGATCACAGCTACGCGTTGACTCCCAACATGGACGTCTCGGCGGCGGAATCGGCAGGTCTACCGGTGAAGATGTACGGATGCAACGTTTGCGACTTGCATTTTACCAACACGAAGGACTTACTGGTGCACAAGGTGGAATACTCGGCGGACGGCgacttcgagtgcaaaggatGCCACCGTAGGTGTCACACCAGTTCCATTCTTGCTAGGCATCAATGTTTGAGTCACACCGACTGCGAGTCGAACAGTACTTACAAATGCTGCTTCTGCGGGGAAGTGTTGACGACCAGTATCTCGATCATGTGTCACGATAAACATTTTCACACGAACAACGTGGATCCGTCGAGACCGCGAAACACCTCCCTGAAACCATTAGACAGCGCTGCTTTGCTCGACATCTCAGGTGGCACTTTCAATTGCTGGACTTGCGACTCCAAGTTCAAAACACCGGCTGATCTGAAGCAACATCTGCTGGAGTACTCGGACATAGGCGCGTTCAGCTGCAGCATTTGCCACAGGAAATTCTCGAATTGCTACGTACTCGAGGTGCACAAGCTGAAGCATTCCACGCTTAGCGTGTCTCTGTTTCGACACCGGTGTCCTTTGTGCAACGAGGGATTCACGTGCGCGAACAACGTTCGAGTACACGTGATGCACCTGCATCGATACGAAATCTTCGGCAACAACAACGTTAAGATGTACACGTTGACCAAACTGCCTAACGGTACAGACACCATCGAGCAGACTGCGATGTTCATCAAGTCCATGACGATAGCTAATAATTCTTTGATGCCGATGTCGGCTTCTCAAACTACGAACAAACTGATGGTGAACTGTCCGGAATGTGACATAACGTTCAGCAGCCCGAAACATCTGGCGAAGCACAGGTCGCGGTTCTGGAACAAAGGGAATCATCAGTGCCCGAAATGTGGCCGTAGATTTCTATGGCTTACGTTGATGCAAGCACATTTAAAGAAACATTCCGCCAAGGCGAACAGTTTGTTGAAGTACTTGTGTCCTCATTGCGACGACAAGTTTCGAAGCTCCGTGGCCGTCTACTCGCACGTCATCCACCTTCACGGCAAGGACAAGTTAGGTGGTCGACATATCCACCATGTTGATCCATGTGCTTCCACGTGTGCTGAGACAGGGAACAGTGCTGCCATGGAAGGAGGTCGATTTGAGGAGGCGGGTACTAGGGCCGGTATTATTGGAACGAAGGAAAGTGGACCGATTCCAAAGGCATCCCAAACGCACTTCATGTTGACACATTTCGATACAACATTAAACGAGTTCAGTTATGCAAATGTCAGAGATGGCTTAACGTGTACCACCTGTGGATCAAGCTTCGCTGACCGACAGACGTTGGATCAGCACAAGAAGACTGCTCATGCACTATGCGAGCACTTGTTCAATATCAACATTGACAAGTCTGAAAAGACTAAGGAGTCTCAGCAGACTAAAGTATCTGAACAGACTAATGGGTCTCAGCAGACTAAAGTGTCTGAACAGACTAATGGGTCTCAACAGACTGACCTGTCTGAACAGACTGACTGA
- Protein Sequence
- MARAIIYKRSVDAVLVDIQLDKLDPSNHGIKIKEEPFDPDILTHDDSSSMSKNGEDQSRIATPEDESSDVVNFTEGKQVSAAKSSSKVIELRSCSLFERNRRSELERMKKRQRVVCNVCLVSFEKARGLVMHRLFLSRPFMCDNCHKSFTSQTNYALHKITYQSSCGGGPGPKPRYVCNFCERGFFRRSLIQSHLFHQHGDAIHGGRFNPGNIVEHASMENVNEDSVDTGSEMSKDSTSTKWISTPTMTVNNLKYSENTPRKKLNSPLSRNLIKSCGTPSKKMKQTTLTDFISFCNATVKNERSTPENLTDLENISGRRPETPDEFENDSSKLLKDIEMSTPVKCPETDMLDSKKPFVRIHMYPNLIMSFLSKNITSPTTPTTSRSTPYNFRQTRAGSNNSTDPESPKSARESRKRKRNAKKEALFSLEKKIRTTCKDCAIYLERCDKVAKTNVSQSVSQQVESERVEENSEEVQKTNLEGDASLKAIETPSAGSSTVIKPCKNEPTTAEQQSDLHEKEVKPKLVRMFRCNLCDKFFLSQENMREHKELFHVIYMSSICNARFKTMSLLLRHYWRQHLIPMHKKCCVCDEKFDSTILLKQHLVLHCVKTVQSKKDTLPVDIEPLCNVFKKRHRCKGCLKRFWLKVCLTQHEKVCRRMKTRTTDKQPRSSSVSIEKDNEKSSSVVDKKQAPSVPPNEQPAVSPNGNTQYRSKIDIFPLESHNVVNKRLINGMAYAKGYQVNAQNDAVFPCTICDKQFRTFPNLCMHERTFCKPLINRCNTCGTAFPTKKLLQIHMLAAHTASNAGHYKFICQYCNQGFVKRMNLQIHERHLHVNTKVLQNTDRIFSVHTICSVCNLMFESYERFVQHNMYYYQGQTFACTFCSESFQGMYLLHHHYKVTHRPDNKRQSYIYTCDVCNEMFSYDSHLHAHKWHVHLHNEPSVQNTLNTMQDHSYALTPNMDVSAAESAGLPVKMYGCNVCDLHFTNTKDLLVHKVEYSADGDFECKGCHRRCHTSSILARHQCLSHTDCESNSTYKCCFCGEVLTTSISIMCHDKHFHTNNVDPSRPRNTSLKPLDSAALLDISGGTFNCWTCDSKFKTPADLKQHLLEYSDIGAFSCSICHRKFSNCYVLEVHKLKHSTLSVSLFRHRCPLCNEGFTCANNVRVHVMHLHRYEIFGNNNVKMYTLTKLPNGTDTIEQTAMFIKSMTIANNSLMPMSASQTTNKLMVNCPECDITFSSPKHLAKHRSRFWNKGNHQCPKCGRRFLWLTLMQAHLKKHSAKANSLLKYLCPHCDDKFRSSVAVYSHVIHLHGKDKLGGRHIHHVDPCASTCAETGNSAAMEGGRFEEAGTRAGIIGTKESGPIPKASQTHFMLTHFDTTLNEFSYANVRDGLTCTTCGSSFADRQTLDQHKKTAHALCEHLFNINIDKSEKTKESQQTKVSEQTNGSQQTKVSEQTNGSQQTDLSEQTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -