Basic Information

Insect: Habropoda laboriosa
Gene Symbol: -
Assembly: GCA_001263275.1
Location: NW:431480-434033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.094 12.4 3.6 2 23 163 184 162 184 0.95

2 12 0.0085 0.48 10.1 5.0 3 23 189 210 188 210 0.95

3 12 0.00022 0.012 15.1 1.9 1 23 219 241 219 241 0.97

4 12 4.9 2.8e+02 1.5 0.2 2 11 248 257 247 269 0.77

5 12 0.048 2.7 7.8 2.1 1 23 275 297 275 297 0.98

6 12 0.0025 0.14 11.8 4.6 1 23 300 323 300 323 0.97

7 12 0.0089 0.5 10.1 2.5 1 22 338 359 338 362 0.90

8 12 0.00017 0.0097 15.5 0.2 1 23 376 399 376 399 0.98

9 12 0.026 1.5 8.6 2.8 1 23 405 429 405 429 0.97

10 12 0.0017 0.097 12.3 0.1 3 23 437 458 435 458 0.90

11 12 7e-08 3.9e-06 26.2 1.0 1 23 464 486 464 486 0.97

12 12 0.00024 0.013 15.0 7.7 1 23 492 515 492 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.094	12.4	3.6	2	23	163	184	162	184	0.95
2	12	0.0085	0.48	10.1	5.0	3	23	189	210	188	210	0.95
3	12	0.00022	0.012	15.1	1.9	1	23	219	241	219	241	0.97
4	12	4.9	2.8e+02	1.5	0.2	2	11	248	257	247	269	0.77
5	12	0.048	2.7	7.8	2.1	1	23	275	297	275	297	0.98
6	12	0.0025	0.14	11.8	4.6	1	23	300	323	300	323	0.97
7	12	0.0089	0.5	10.1	2.5	1	22	338	359	338	362	0.90
8	12	0.00017	0.0097	15.5	0.2	1	23	376	399	376	399	0.98
9	12	0.026	1.5	8.6	2.8	1	23	405	429	405	429	0.97
10	12	0.0017	0.097	12.3	0.1	3	23	437	458	435	458	0.90
11	12	7e-08	3.9e-06	26.2	1.0	1	23	464	486	464	486	0.97
12	12	0.00024	0.013	15.0	7.7	1	23	492	515	492	515	0.96

Sequence Information

Coding Sequence: ATGTCAAATAATAGACATCAACATTTTAAAGTATTATCACATCATTCACTTAACAGTGAGaataaaatataatttgattttgtaaaaattgaaaatattcctttGCAAAATACGCTCAATTCTCAAAATGAATTAAAGTGTAAATATATAGAACAAAgtcatttaaaaatgaaaaatgaaccTATGGAGTTTATAGCTTCCCTCAATGAGAATAGTACTTATACTGATGATATAAAATCAGTCCCAACTACTAATGTAATTAATACAGAGGATATGAAAGGTAACAATTTTCCTATTAAAGTAAAAAAGGCTTTTGTATTtgagaaaaacatttttactcAAATTAAGGATAAATCTTATAATTTAGAAactaagaataaaaatttaaatgatgAAAATAATGATCCTGAAATTAAATGTATATCATCAACTAatcaaagtaaaattaaaattaatagtttagatattttaaataaacaagttAAAACATGTAGTCAATGTTCAATGACATTTAGATACAAAAGACATTTAGATCGGCATTTGGAAGGTcatcaaaaaaataattgttttcattGCAATGCAAAATTTGCTAGACGCAAACACCttgaaatacatttatttcgCTCACATGGTGAGAGAGTAACAAAATACCCACACTCTTGTGATGTATGTTCTCGTAGTTTTCctaaacgtattttattaaatcgtCATCGTGCAAAgcataattatgaaaatggcAAAGTTTGTTCGGATTGTGGAGAAATGTTAAAAGCAGAAGAAGATGATAAGCAACATAAAGAAAATCATTGTACAAAACaacaatttaaatgtaaaagatGTTTACAAACATTTAGTATTGAACAAACATATCTAACTCATATCCAGAATCATGATAATCataaatgttcaaaatgtGATGTCACTTTTgcatcaaaaaaaaaagttcatgaACATTACAGAATGGCACattcttcaaaattgaatcataataaaatatcaaataatgGTATTTATTTTTGTGCTGACTGCAGACatacttttataaaaaaggATGATTATTCACGTCATTTAGATTCTACTTCGCATCTTAATAAAGTAAACAGGGAGGTACCTTTAAGAGACATTTTTACATGCCCAATTTGTtctaagaaattaatttcacaaagaGCTCTTGACCAACATGTTAGACGTATAcataaaagagagaaaagatttACATGTAATATATATGGTTGCACATTTCAATGTGCAAGAAAATCGGATTTAGATAGGCATAAACAGTTACATGTAGAACAAAGGAACATTATTTGTGAACAATGCGGTAAAACTTTTACTAGTGTTAGTATCCTTAATGATCATGTTCTTTATATACACAATAAAGAAAGACAATTCATATGTGAAGAATGCGGTAAAGCATTTAAACGAAATAGTTTACTGAAAAGACATAAATTATCTCATCAACAATATCGACCATTTGCTTGTATGCAATGTACTACTGCTTTTAAGAGATCTCATCATCTTACTCGTCATATGGAAACTTGTCATAGAATTAcacttgaaaagaaaaaaaagGTTGTAAAACTCATGAAAACAGAAGATGGTCACCTTGTTCCAATACcagaaaaaccaaaaaaactTAAacccaaaaaattaaaaattaaaggtgCATCTAATACAATCATGACATCAGGTGACAaaactccactttttcaaaatatagaCATTATTAATAAACACTTTGATTCAAGTTTGGAAATACAAGCACTGCCTAATTCTGCTAATCTATGTGAAAATCTGACATTGTCATTAGAACTTACAAATTTATTGCCTAATGCAGATTCTACCCCTCAAGTTCTTTCATTAGTAGATATTAATGCAGAACAAATTGTCACTGTAGAAGTTACTAGTCCAAAGATATTAACTATGAATGATCTTATAGATCAATTTGAAGCAAATtgcaatgaaatattgaatctaacaaattatcaagatttagaatttcaaaatGGTATTTTAAGTATGGATCAAAGTTTGTATGATCATACAAATTATTCAGAATTATCATTTGGCACTGTTGAAGGAACATCACTTTTTGTGGATTCAAACATTAACAAAGTAGATACTTTAccaatagaaaattatttaaatcaaccatttccaccatttttaaatctttaa
Protein Sequence: MSNNRHQHFKVLSHHSLNSENKI*FDFVKIENIPLQNTLNSQNELKCKYIEQSHLKMKNEPMEFIASLNENSTYTDDIKSVPTTNVINTEDMKGNNFPIKVKKAFVFEKNIFTQIKDKSYNLETKNKNLNDENNDPEIKCISSTNQSKIKINSLDILNKQVKTCSQCSMTFRYKRHLDRHLEGHQKNNCFHCNAKFARRKHLEIHLFRSHGERVTKYPHSCDVCSRSFPKRILLNRHRAKHNYENGKVCSDCGEMLKAEEDDKQHKENHCTKQQFKCKRCLQTFSIEQTYLTHIQNHDNHKCSKCDVTFASKKKVHEHYRMAHSSKLNHNKISNNGIYFCADCRHTFIKKDDYSRHLDSTSHLNKVNREVPLRDIFTCPICSKKLISQRALDQHVRRIHKREKRFTCNIYGCTFQCARKSDLDRHKQLHVEQRNIICEQCGKTFTSVSILNDHVLYIHNKERQFICEECGKAFKRNSLLKRHKLSHQQYRPFACMQCTTAFKRSHHLTRHMETCHRITLEKKKKVVKLMKTEDGHLVPIPEKPKKLKPKKLKIKGASNTIMTSGDKTPLFQNIDIINKHFDSSLEIQALPNSANLCENLTLSLELTNLLPNADSTPQVLSLVDINAEQIVTVEVTSPKILTMNDLIDQFEANCNEILNLTNYQDLEFQNGILSMDQSLYDHTNYSELSFGTVEGTSLFVDSNINKVDTLPIENYLNQPFPPFLNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983796;
90% Identity: iTF_00118225;
80% Identity: -