Basic Information

Insect: Habropoda laboriosa
Gene Symbol: -
Assembly: GCA_001263275.1
Location: NW:15065-18146[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0009 0.051 13.2 1.6 1 23 258 280 258 280 0.97

2 11 0.0026 0.15 11.7 0.9 1 23 288 311 288 311 0.95

3 11 0.00015 0.0086 15.6 3.3 1 23 367 389 367 389 0.98

4 11 2.1 1.2e+02 2.6 0.4 13 23 419 429 418 429 0.91

5 11 2.2e-05 0.0012 18.3 0.7 1 23 434 457 434 457 0.96

6 11 4.2e-06 0.00024 20.6 0.3 1 23 492 514 492 514 0.98

7 11 5.6e-07 3.2e-05 23.3 0.9 1 23 524 546 524 546 0.96

8 11 1.6e-06 9e-05 21.9 1.2 1 23 552 574 552 574 0.99

9 11 8e-06 0.00045 19.7 0.2 1 23 580 602 580 602 0.98

10 11 6e-05 0.0034 16.9 4.6 1 23 608 630 608 630 0.98

11 11 0.00024 0.014 15.0 0.4 1 21 636 656 636 657 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0009	0.051	13.2	1.6	1	23	258	280	258	280	0.97
2	11	0.0026	0.15	11.7	0.9	1	23	288	311	288	311	0.95
3	11	0.00015	0.0086	15.6	3.3	1	23	367	389	367	389	0.98
4	11	2.1	1.2e+02	2.6	0.4	13	23	419	429	418	429	0.91
5	11	2.2e-05	0.0012	18.3	0.7	1	23	434	457	434	457	0.96
6	11	4.2e-06	0.00024	20.6	0.3	1	23	492	514	492	514	0.98
7	11	5.6e-07	3.2e-05	23.3	0.9	1	23	524	546	524	546	0.96
8	11	1.6e-06	9e-05	21.9	1.2	1	23	552	574	552	574	0.99
9	11	8e-06	0.00045	19.7	0.2	1	23	580	602	580	602	0.98
10	11	6e-05	0.0034	16.9	4.6	1	23	608	630	608	630	0.98
11	11	0.00024	0.014	15.0	0.4	1	21	636	656	636	657	0.94

Sequence Information

Coding Sequence: ATGGAAGTTTCGAAAAACGAGCAGTTAGTTGACACgtatgagaaaatatatggAGATGAATGCCGAATTTGTTTAAAGAGAGCTGCTGAAATATGTGAACTTTTTAGAAATGGGGACGCTATTTCTCGCAAACTTATGGCCGTTGCTTCTGTACAGgTTGAAGAAGGGGATGGTTTACCTCCAGTGATCTGTTTGCCTTGTAATCAGCGTTTGGATGCATCTTATGATTTTAAATGTCAGATACAAGATTCAGATGAAAAACTTCGTCAGGTTCTGAAACTAAAATCCTCTGCTAATGATTCTGTTACTAGTGCCAGTATAGTCACAGCAATAATTGCTGATATGATATCTAGTGTAATATCTTCTGAAAAGGAGAATACAGAAAAGCAAGAAGTTTGttcaacaaatttttgtcctgataatttttgtttcataaaAGATGAGACCTCTTTTTGTCTCAATTCAGAAAAGAACTTGTTTTGTTATGACAAAGAACCACAGAGTCAATTAAATAacacagaagaaaaaagaagtcaGGATAAtgtaaatgtttataaaagtttattaGAGGATGATTCTGTAAgacaaattaattcaattaaacaagAAGGTTTGCCTTTATTGGAGGAACATGTAgtgcaaaataaagatatCTCATTAAAGGTTGAAGTAAATGATGCATCAGAAAATCAACAAATGTTAGAAGAGACAATAAAAACAGATGGTATTCAAGATGATGAAGAAAAACCACTAATTTCACGCACAATTAGATTTCGCTGTACACAGTGTATTAAATCTTTTCATACAAAAGTGGCCTTGCAGAGACATGCCATTGTACATAAACGTAAAACTAAATTACGTTATGTTTGTTATGTTTGTGATAAACAGTATTCAACCCTTGCAAAAGTAAAAAATCATGTAGCAATTTGTCATGAGTCTCAtgacagaaaagaaaatattcaagataaaagaattaattatgaGCAAGGGAAAGGAATTGCAAATGTACAAGATAAAAggattaataatattcaagacaaaagaataaaaattcaaaaaaatgaTGACTCTTGTAAAGAACAACGAAAAAGCCTAAAATTTACATGTAAAGTTTGTTCAAAACAATTTACTTATCAAAAGTCTTTTATTACTCATGCTAAAAGTCATCCAGAGTATAAATCAGAAGAGTTGGATGATTCTTCACAATGTTCAGCAAAAGAAAGATCCACAGAAAtggttgaagaagaagaagaacaaagaaatcttaAAAGGCATGTTTCCACACATAGTGGGTTAAAGTACACTTGTGGAACATGTGGTAAAGGATTTTCAAGAGtggataaattaaaagatcATGAACAATCAAAACATAAggctgaaatttttgaaaactctGATTTGGATGATAAAGATGACATGGACAATAAAGGAGACTGTttagaaggaagaaaaaaaGATCGTCACAATAGACCACATAAATGTGTAATCTGCCCTAAATCTTTTGCGCAGGCGCAGTCCCTAGCAAATCATATAGAACGTCACAAACGTGTTAAAGAAACTCAAAAAAGGTTTCTTTGTGAAGTCTGCAGTAAATGTTTTGCACAGAGTGGTTCCTTGGTTGCGCATATGCGAACACATACAGGAGTTAAACCTTATGTTTGTAACGTGTGTAGTAGGGCTTTTACAAAGAGCACTTATTTGCAATTGCATCTACGTACGCATAGTGGAGAAAAACCATATATTTGTCAGTATTGTAGCAGAGCCTTTGCACGTGCGAATACATTGGCACGTCATATAACGATGCACACAGGAGAAGCGAAATATCATTGTCAGATTTGTACAAAATCATTTAGAAGACTGACTTCACTGAATGAACACACTTACACACATACTGGTCAGAGACCATACGCttgcaaaatttgtacaaaaagaTATAATAATGCTGGGTCACTTTATGCACATAGAAAGAAGTGCAAGGCACAGCAGCTATCTAATACTGGATTTGCGGTTTCTGTGGAAAACTCTGTGCCGCAACAAGATATAAATGTTCCGCAAGTTTTGATTTATTCACAGAGGAAGTTAGTCGAGGATGCGACTGTTGGGCAAATCACACCTACGCCACAGTACATGATCGCAAATATACACAATCAAAAGAGCCTGGGATCAAATATTATCCAGCCTTTTACAGTGGATGATCCAAATGTTTATACAATTAATTCAAAGCAATTTAAGAGTCCCTATTATGCGATTTATCCAAACATGTAA
Protein Sequence: MEVSKNEQLVDTYEKIYGDECRICLKRAAEICELFRNGDAISRKLMAVASVQVEEGDGLPPVICLPCNQRLDASYDFKCQIQDSDEKLRQVLKLKSSANDSVTSASIVTAIIADMISSVISSEKENTEKQEVCSTNFCPDNFCFIKDETSFCLNSEKNLFCYDKEPQSQLNNTEEKRSQDNVNVYKSLLEDDSVRQINSIKQEGLPLLEEHVVQNKDISLKVEVNDASENQQMLEETIKTDGIQDDEEKPLISRTIRFRCTQCIKSFHTKVALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHESHDRKENIQDKRINYEQGKGIANVQDKRINNIQDKRIKIQKNDDSCKEQRKSLKFTCKVCSKQFTYQKSFITHAKSHPEYKSEELDDSSQCSAKERSTEMVEEEEEQRNLKRHVSTHSGLKYTCGTCGKGFSRVDKLKDHEQSKHKAEIFENSDLDDKDDMDNKGDCLEGRKKDRHNRPHKCVICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQLSNTGFAVSVENSVPQQDINVPQVLIYSQRKLVEDATVGQITPTPQYMIANIHNQKSLGSNIIQPFTVDDPNVYTINSKQFKSPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118159;
90% Identity: iTF_00118159;
80% Identity: -