Basic Information

Insect: Habropoda laboriosa
Gene Symbol: ECU06_1150
Assembly: GCA_001263275.1
Location: NW:83310-86955[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0007 0.039 13.6 4.2 1 20 252 271 252 273 0.95

2 9 0.00014 0.0078 15.8 0.3 1 23 327 350 327 350 0.95

3 9 0.00012 0.0067 16.0 1.7 1 23 382 404 382 404 0.98

4 9 5.3e-06 0.0003 20.2 1.7 1 23 410 433 410 433 0.97

5 9 8.5e-06 0.00048 19.6 0.4 1 23 439 461 439 461 0.98

6 9 9.8e-08 5.6e-06 25.7 1.0 1 23 467 489 467 489 0.98

7 9 3.2e-05 0.0018 17.8 1.2 1 23 495 517 495 517 0.98

8 9 3e-05 0.0017 17.9 6.5 1 23 523 545 523 545 0.97

9 9 8.3e-06 0.00047 19.6 1.1 2 23 552 574 551 574 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0007	0.039	13.6	4.2	1	20	252	271	252	273	0.95
2	9	0.00014	0.0078	15.8	0.3	1	23	327	350	327	350	0.95
3	9	0.00012	0.0067	16.0	1.7	1	23	382	404	382	404	0.98
4	9	5.3e-06	0.0003	20.2	1.7	1	23	410	433	410	433	0.97
5	9	8.5e-06	0.00048	19.6	0.4	1	23	439	461	439	461	0.98
6	9	9.8e-08	5.6e-06	25.7	1.0	1	23	467	489	467	489	0.98
7	9	3.2e-05	0.0018	17.8	1.2	1	23	495	517	495	517	0.98
8	9	3e-05	0.0017	17.9	6.5	1	23	523	545	523	545	0.97
9	9	8.3e-06	0.00047	19.6	1.1	2	23	552	574	551	574	0.96

Sequence Information

Coding Sequence: ATGGAATCTGAAAGTTCTGTTATTTTGGAATCATGTGAGgaagattcaattttaattgcaactGTGAAAGACATGGTTGATGAAAATACACATACTGAATTAGAAAGTGAAGAAGGTTTTTTTGTAGAAACAGATAATCAGAATGAGCAACAAAATGAGATAGAAGTTTCAAATGAAGAATCAACAGTAATACAattggaaaaagtattttcttgGTCCTCTTTATGTAGAGTATGTGCTAATACCAATGATCATataattccaatatttgaaGAAGAAGGTTTACAACATGATTTATGTAgcaaaatacataaatatctACCTATACATATATCTGAAAATGATACACTTCCATTGCAACTATGTTATCATTGTGCTGCTACATTACTAGCATGGCATGAACTATTAGAAGGATGTTTGAATGCAGAAAGAATATTAATAGAAATGCAAGATGGTTTGCAAGAAAAACAGAATCAACAACAAGAAACTGAAAAGGGTCAAGTTCTTGTGGAATCAGCTGTTAATGATTCAGACAGgTTCGGTCTACCTCGGAAGAAATCCTTCGCGGCATATTGCTCATGGCAACCGACATTCAGTAAAACGAACACTAAAGaaagtataaaagaaaaaaccacCGATAATGACGATAGCATTAATTCATTTGACAATTGTAGTACAGGTTTTAATATGGTAGAGATGATGGGAGTCATGCTATCTCCTCACAACGAGAAACTTAATTCACCAAAGAGTCAATATTCTTGCAAAAATTGTCAGCAAATGTGTAAAACAGAATACCACTTGACACGGCATATATctcaatgtaaaaataaaatgaaaaataatatcgagaagaaaaataaacgctCCAATGGTCGAAGCATATCAAACGTGAGAGAATTGAACAacaaagaagataaaaatctGATGGACCAAGGtcgtaaaaattggaaattgttcaaacgaaaaagatacgaaacgTATCCATGTATGTATTGCGATTACACAGTCAAACAGAAGAAGCTGCTCGAGGTACATTTGATGGAGTTGCACCCGGAATTCACCGGGAAGAaagataagaaattaaaatgtgCTGATCGTGAAATGGTGATGCGCGCTAAAATGGAAATCGATGGAAAGGTTTATTATCATTGTAATGAATGTGGTAAAAACCTTTATTCACCGTATACGTTCTTTTGGCACGTACGAATACACACTGGAGAACGACCGTATACTTGTCATTTATGTGGCAAGCAATTTCGTGTTAACCAGGGTCTGGTTAGACATTTACGCGAAACGCATGCTGGCATTAAGAATTTTCCATGCGACATCTGCGATCGAATGTTCTCGACGAAACGTAGCGCAGAAGATCATAGACGTATACACACCGGTGAACGACCATACATTTGTAACGTTTGCGGAAAATCGTTCAAGCAAAAGGCTTCTCTGTTCGTACATAACCGTACACATTCGGACGTCTTTccttttaaatgtaattactgcaatcaaaattttcgaaccaGACCACCGCTCATGGTACACATAACCAAACACACAGGTGAAAAGCCGCACACGTGCGACATATGCGGTCGATGTTTTCGTATAAAACACGAGCTGAAACGTCATCGTTTAATACATTTCGACGAGAAACCGTGGCAATGCACAGAATGCGATCTCTCATTTCGACAGAAGCGCTATTTAGTTAatcatagaaaaattaatcataaCACAGATTCGTTCGTGGCTGACGTGAAGTAA
Protein Sequence: MESESSVILESCEEDSILIATVKDMVDENTHTELESEEGFFVETDNQNEQQNEIEVSNEESTVIQLEKVFSWSSLCRVCANTNDHIIPIFEEEGLQHDLCSKIHKYLPIHISENDTLPLQLCYHCAATLLAWHELLEGCLNAERILIEMQDGLQEKQNQQQETEKGQVLVESAVNDSDRFGLPRKKSFAAYCSWQPTFSKTNTKESIKEKTTDNDDSINSFDNCSTGFNMVEMMGVMLSPHNEKLNSPKSQYSCKNCQQMCKTEYHLTRHISQCKNKMKNNIEKKNKRSNGRSISNVRELNNKEDKNLMDQGRKNWKLFKRKRYETYPCMYCDYTVKQKKLLEVHLMELHPEFTGKKDKKLKCADREMVMRAKMEIDGKVYYHCNECGKNLYSPYTFFWHVRIHTGERPYTCHLCGKQFRVNQGLVRHLRETHAGIKNFPCDICDRMFSTKRSAEDHRRIHTGERPYICNVCGKSFKQKASLFVHNRTHSDVFPFKCNYCNQNFRTRPPLMVHITKHTGEKPHTCDICGRCFRIKHELKRHRLIHFDEKPWQCTECDLSFRQKRYLVNHRKINHNTDSFVADVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -