Basic Information

Insect: Habropoda laboriosa
Gene Symbol: gtf3a
Assembly: GCA_001263275.1
Location: NW:719358-724198[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.5e-05 0.0031 17.0 0.1 2 23 683 704 682 704 0.97

2 16 0.62 35 4.3 1.5 3 23 738 758 737 758 0.97

3 16 0.0001 0.0059 16.2 1.2 3 23 767 788 766 788 0.98

4 16 0.0019 0.11 12.2 2.0 1 23 795 818 795 818 0.95

5 16 6.6e-05 0.0037 16.8 0.7 1 23 824 847 824 847 0.94

6 16 0.9 51 3.8 2.5 2 23 855 875 855 875 0.94

7 16 1.1e-07 6.3e-06 25.5 1.7 2 23 881 902 880 902 0.97

8 16 1.6e-06 8.8e-05 21.9 0.2 1 23 908 930 908 930 0.99

9 16 0.00044 0.025 14.2 2.1 2 23 942 964 941 964 0.95

10 16 0.0055 0.31 10.7 2.5 1 23 970 993 970 993 0.96

11 16 0.018 0.99 9.2 3.8 3 23 1016 1037 1015 1037 0.95

12 16 0.00081 0.046 13.4 1.4 2 23 1044 1066 1043 1066 0.96

13 16 2.7e-05 0.0015 18.0 1.0 2 23 1074 1095 1073 1095 0.96

14 16 0.00084 0.048 13.3 2.3 1 23 1101 1124 1101 1124 0.96

15 16 0.23 13 5.7 3.2 2 23 1131 1152 1130 1152 0.96

16 16 0.0066 0.38 10.5 2.6 1 23 1158 1180 1158 1180 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.5e-05	0.0031	17.0	0.1	2	23	683	704	682	704	0.97
2	16	0.62	35	4.3	1.5	3	23	738	758	737	758	0.97
3	16	0.0001	0.0059	16.2	1.2	3	23	767	788	766	788	0.98
4	16	0.0019	0.11	12.2	2.0	1	23	795	818	795	818	0.95
5	16	6.6e-05	0.0037	16.8	0.7	1	23	824	847	824	847	0.94
6	16	0.9	51	3.8	2.5	2	23	855	875	855	875	0.94
7	16	1.1e-07	6.3e-06	25.5	1.7	2	23	881	902	880	902	0.97
8	16	1.6e-06	8.8e-05	21.9	0.2	1	23	908	930	908	930	0.99
9	16	0.00044	0.025	14.2	2.1	2	23	942	964	941	964	0.95
10	16	0.0055	0.31	10.7	2.5	1	23	970	993	970	993	0.96
11	16	0.018	0.99	9.2	3.8	3	23	1016	1037	1015	1037	0.95
12	16	0.00081	0.046	13.4	1.4	2	23	1044	1066	1043	1066	0.96
13	16	2.7e-05	0.0015	18.0	1.0	2	23	1074	1095	1073	1095	0.96
14	16	0.00084	0.048	13.3	2.3	1	23	1101	1124	1101	1124	0.96
15	16	0.23	13	5.7	3.2	2	23	1131	1152	1130	1152	0.96
16	16	0.0066	0.38	10.5	2.6	1	23	1158	1180	1158	1180	0.98

Sequence Information

Coding Sequence: ATGGCATATAATCAtagaaattatATGCAGTACATTGAAGTTAATAACAAGGATCATAATTATAGTGAAGTAAAATTAGATAACCTCCAACATAGTGATAACATTACTCAAAATATATGTGACAATGATGTTAAAGTAACTAAGTCTAGCAAATCTGGATTGACATTGAATAAAGAAACATTTGGTCAGATTAAAGAtattaatgaattaaaaaaaataacaccACGTGTAAAATTATTGACTCACGATGCAAATAGTTTAAATGAATTAaccaaaatttcattgcaCAATAAAGTATCTGCACAAAAAAAGTTATCAATATTGGAGCAAACAAAACAGGAATTAAAGAAGTATTGTAGGACTTGTGCTGGTTTAAAACTTCCATTAGTTGACATTTTTAGTGAAAAGGGTAATCAAATGAGATTAAGTCAACAAATTAAACATTTGGAAGACATAAATCCATATGACAGTTTGTCAACTCAAATGTGTATGGACTGTATTTGTGACTTAAAAATgagttataaattttttatgcaaattaagAAAGCAGAAGTTAAATTGAAATCCATTCATATTACTCTAACTGATACAGcaacaaaaaatatagaagCGAGCAAAATACAACCTACAGAAAGTTCtgagaaacagaaagaaaacattATGGAGTGCAACGCAACAAATCtatttctaaataaagaaaataatgaacgGACATGTGTACCAAAAatatctgcaattttttcactaaaaaatgaacaagaatttttaaaagttgaaaaagtAGATTCTGTTGAAGAATCAGAAAATAAGACTgaccttgaaatttttaaaaatttagtagTTCAACAAAACAGTGATGACAATGAATCTATAGAAGAATTTGATCCAGATGATCCTCCTTTTCAGCCTGATAGTTCTGATACTGCAGAATCTGATGATGAAGTAAATATTCAaacacaaaatataaaaaaatcaaatactcaacagaaagaaaatattaaacaatgtTCGCAACcagtttttatttctgatagtAATTCAATTCCAGATAAAAGCACTGATCTTCATCAAACAACATATAACTATGACACATTTTTAAGAGCATATATTAAAGTAGAAGACACAGAAAGTAACAATCTGTCTACAGAACCACACAGCATGATTAAATCTGAAACTATATGTAATGTTGAAAGTGCAAAAGAATGTTTGAAACAACCAAATATATTAAAACGAAGACTTTTATTACAAACTAAAAGAGACTTTACTGAAGAAACTGATGAAAACATTTGTCAGTCCAATATTTCTGATAAAATTGGAAGTCATGAAGACTTTAAAGTACAAAAACTGAATGTAAACAATTCTTTGAACATTAACAGTAATCAGGAAGATGGAATCATGTACGTTACTGTAAAAGGGTCTAAaccgaatgaaatattattagtaaaagttaaaaaaatggATAAACCATTAGAGAAAAAGGATGATAAATCTgtaggaaaaaagaattttgataTCAAAccaatggaaaaaattttaaaaaggtaTGAAACTCTAGCTACTAAAGAAAAAGATTTATTTCCAGAACGAacaaaaaaatctgaaattagAGGACAAATTATAGAAGAACAAATAGAAGAATACAAGAAAAAGCGAGAAAAAGTATTAGaaattgtagAACCAGTCAAGGAAAAACTCACTAATGAAAAAACGTATGTAAATACTGAAGAATATTTATCGCGTTTAGCAAAACTTAAATTGAAATGGgaagaagtaaaaaagaagaaagaatttcttcaaaaagaaCTTGATGAATCTTATACAGaaggaaatatagaaaaattggcAAGAATTttgggagagaaagaaaagaacttGCAAGATTTCCaagattatttaaaacaacGTAAGATTGTAATTACAAGATTAAAGGATGAGGATATCATTTCCCTTTATGAAGACAGAAATAATGCAGTGCTTAAAAATAGTTTACCTGACTTAATAGATGAAAGCCAACCAGCAGATTATATTCCAGAAGAACATTATTTGGAATGTGATTATTGCCCAGAAACATTTGCTTCTAAAGATGTACTTGAAGAACATTTGAAAATGCatgattataaaattatgcatTTTTGTGAAGATTGCATGGAAgaatttccaacaaataaagcaaaaagaaatcataatgtaatttgtataaaaaaattattatgtaaatattgtGACATGATGTTAGATTCAAAAGGGAAGAAACGTCAGCATGAACAAAAACATTGTGACAGTTTATATGGACAATTATGTGATATATGTGGTGAAAAGTTTAAACATCAAGGAACATTAGACCAACATGTAAAAACACAACACATGAGTTGGGAGAAAATATATCAATGTCCAAAATGTCCTAAAAAGTTTGCATTCAAACAAAAACTTAGTTTTCATCTAAAATCTGTACACACAACATTAAGGGCATACTTGTGTGAAGATTGTGGTGCAGATTTTAAAAATCCTGCAAGTCTTAGACATCATAGAATACGTAAACATCAACCAGTAGGTAATAAAAGGGAATGTCCAGTTTGCCATAAATTAGTGCCGTTTTATAGCCTTTCTAAGCATATGCATACTCATAAAGCATATACTATTGAGTGTCCACATTGTgacaaaatgtttaaaaatagttcAACTTTAAAACAACATGTAAGAATTCATGAAGATCAACGTCAATATCGATGTGATACCTGTGGTGTTGGATTTAACAGACGGGATGGCTTAAGGTTACATATGAGAGTGCATGAAAAAACTGATAGTAGAGGATTGAAAGAATGTTCATGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCAATGCTCGTTATACATAGAAATAGAGTTCACAAAGATGGTAGGCAATACACATGTCATATATGTAACAGATCAATGATTTCAACTAGATCATTAGAATGGCATATGTCTCACATACATAATGAATCACTTCCTGGTGTTATAAAGGAAGATATGGATGGACCaccagaaaagaaaagagcatCATGCTACCATTGTAATAAGACATTCAAAACAGAAATGATTTTAAGAacacatattaaaaacacacATATGGAAAAAGACCCTATGAAATGTTTAGATTGTGAGTTAACATTTACTTCTGAAGTTAGATTAAGACACCATATGATGGTGACCCATAACAGACTAGAGGGAACTTTACCATGCCCACATTGTCCAAAAAGGTTTGTAAATCAACTTAGGTTAAAGACTCATATGATATCTCACTCTGAAGAAAGGCCATATACTTGTGAAATTTGtggatttaatttaaaaactaaGATACAGTTGATTAAGCATCATCAAAATAGGCATAGTGATGAAAGACCTTTACAATGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGTGCTCTTGTATGTCATGAAAGAACACATACAAATGAGCGACCATACTCTTGTAGTGTGTGTAGGCaacgttttaaatatttaggtGATAAGAATAAACATGAAAGGAGACATGAAAGTTTGGGTGGATCTGGATTTAAAAGAATTGTACTTGGTCGAAATATCAAAGCTAAAGTACAAGAAGATTCTTCTTGTTCTGAGCATGAACAAGAAGGTTTAACTAATACAGAACATCAAGTTCCTGAAGGCCAATACCAAGAACAAGCAGATCAACAATTTGAAGAACAGATAGTTAAGTTTGAAGAACAAGAAATAGTAAAGTTTGAAGAACAGGAAATAGCAGAAGAGTATGAGCAAGTATACGAGCAGGAATACGAAGAAACATCCAGAGAGGCTTCGGATGCAGCAGAAGTTATAATGAATATGGAAGATACTGTTTATACAGAAGAAGTGGCTGCAGATAATATTGAACCTGCAGAAATTATGACAGATGAAATGAtgacaaatgaaatattacaatcAGGTGCTGTAGTTCATTTGCAACAAGAAGATGATTCAGGAAAAATACAAGTTATACCAGTGATGTTATCCTTGCCCGATTTATCTGATGCAAATACAGAAGTCAATCTAGCTACAGCATCCattatgtataataattaa
Protein Sequence: MAYNHRNYMQYIEVNNKDHNYSEVKLDNLQHSDNITQNICDNDVKVTKSSKSGLTLNKETFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKVSAQKKLSILEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIKHLEDINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHITLTDTATKNIEASKIQPTESSEKQKENIMECNATNLFLNKENNERTCVPKISAIFSLKNEQEFLKVEKVDSVEESENKTDLEIFKNLVVQQNSDDNESIEEFDPDDPPFQPDSSDTAESDDEVNIQTQNIKKSNTQQKENIKQCSQPVFISDSNSIPDKSTDLHQTTYNYDTFLRAYIKVEDTESNNLSTEPHSMIKSETICNVESAKECLKQPNILKRRLLLQTKRDFTEETDENICQSNISDKIGSHEDFKVQKLNVNNSLNINSNQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKDDKSVGKKNFDIKPMEKILKRYETLATKEKDLFPERTKKSEIRGQIIEEQIEEYKKKREKVLEIVEPVKEKLTNEKTYVNTEEYLSRLAKLKLKWEEVKKKKEFLQKELDESYTEGNIEKLARILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPADYIPEEHYLECDYCPETFASKDVLEEHLKMHDYKIMHFCEDCMEEFPTNKAKRNHNVICIKKLLCKYCDMMLDSKGKKRQHEQKHCDSLYGQLCDICGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIECPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSMLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVIKEDMDGPPEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKAKVQEDSSCSEHEQEGLTNTEHQVPEGQYQEQADQQFEEQIVKFEEQEIVKFEEQEIAEEYEQVYEQEYEETSREASDAAEVIMNMEDTVYTEEVAADNIEPAEIMTDEMMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_00118171;
80% Identity: -