Basic Information

Insect: Habropoda laboriosa
Gene Symbol: -
Assembly: GCA_001263275.1
Location: NW:318629-322594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.4 3e+02 1.3 0.2 1 20 356 375 356 379 0.77

2 10 0.018 1 9.1 4.2 1 23 386 408 386 408 0.97

3 10 0.0021 0.12 12.1 3.1 1 20 414 433 414 436 0.96

4 10 9e-07 5.1e-05 22.6 0.6 1 23 442 464 442 464 0.99

5 10 3.7e-05 0.0021 17.6 2.4 1 23 470 492 470 492 0.98

6 10 2.4e-06 0.00014 21.3 0.7 1 23 503 525 503 525 0.98

7 10 1.8e-08 1e-06 28.0 0.3 1 23 531 553 531 553 0.99

8 10 5.6e-06 0.00032 20.2 0.6 1 23 559 581 559 581 0.95

9 10 7.4e-06 0.00042 19.8 0.1 1 23 587 609 587 609 0.93

10 10 1.3e-05 0.00076 19.0 0.2 3 23 617 637 615 637 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.4	3e+02	1.3	0.2	1	20	356	375	356	379	0.77
2	10	0.018	1	9.1	4.2	1	23	386	408	386	408	0.97
3	10	0.0021	0.12	12.1	3.1	1	20	414	433	414	436	0.96
4	10	9e-07	5.1e-05	22.6	0.6	1	23	442	464	442	464	0.99
5	10	3.7e-05	0.0021	17.6	2.4	1	23	470	492	470	492	0.98
6	10	2.4e-06	0.00014	21.3	0.7	1	23	503	525	503	525	0.98
7	10	1.8e-08	1e-06	28.0	0.3	1	23	531	553	531	553	0.99
8	10	5.6e-06	0.00032	20.2	0.6	1	23	559	581	559	581	0.95
9	10	7.4e-06	0.00042	19.8	0.1	1	23	587	609	587	609	0.93
10	10	1.3e-05	0.00076	19.0	0.2	3	23	617	637	615	637	0.98

Sequence Information

Coding Sequence: ATGAGCTGGGAAATCAGCTGTGCTGATATGTGTCGAGCTTGTATGAAAGTTGACGGCGTTCTTCTTCCTATGTATGATGACGACACGATTAGTCAAAAAAATTTACCCGATAAGCTTGCCGAACTTGCATCGATACAGATTGATAAGTTTGATGGACTACCAAACATGCTTTGTGCAAAGTGTGCTTACCGTACTGATGCATTCTATGATTTTAAATTGCAAGTTCAAGCTACTGAAAAGAAACTTCGCAAAATGTTTGAAACACAAATTCGTTATGCCATAAAGGAAGAAGCAATTAGCAATGATTTTGAGCCAGACAGTTCGGAACAATCGAACGAATTGTTACAGGCGAAACTGTTAGATGACAAACAGGATATTAAGCCCTTAAGTAATGCAGATAGTTCGGAGGAATTTTTACCGGGAGAAATGAATATGAACGATAAAGGTGAACAATTCGACATGTCTGAATTAGTGGAAGAAAGCGAGGAATTTAATAAGGCCGAAATATCCGAGTTAAGAGGtattattatttcgaaattgtcagaGGCAGAGGTTGATCCAGAGAAACGATTGAAAGGCGAGATACccgatgaaatttcgaaaatttttgaatctcAGCAATTAGATTATACGATAATGTATATACCGGAAGAGGATGTTTCTTTGGAAGACGTGGGGCATGTAAATACTGATAACTCGGTTTCCTGCGATCCTATTAAATTAGATGACAATAAAGAAATGATCGAAACTAGTTGTAATGGTGAGCTCTTAGACGAACCTATGGGTAGCGAGGAATTTTTGAATGCTGTGTGCAAcgagaaaaatgtagaaatggAAACTAGTAGAATACACAACGACAAGATTGCGATActggaagaaaaatcgagggaAAGAATGAACGGTAAACATATACGAAAAGTTTCGTTAGAAGTGCATCCTCACGCGGATGATAGCGAGGACTCAGATTCTGATTATTTCGTTGACCCAAAAGACAATATATTGGGTAGTTTGAACGACACGATAACGAGAATAAAAGAGATTAAACTGGAGGACGACGTGGTACAGTATCAATGTACTTTGTGCTTGCAAAATTACGACAAGCTGACCGGAGTTTTATTGCATACTATAGACAATCACGTGCCGAGTAGCGGGCCGTTCTTCTGTGTGGTATGTGAGAAAGACTGCGAGAGTCATAGAGAATTACGAACGCATGTGAAAACGCATACCGGCCAGTTCCCTTATTCCTGTTTCATATGTAGCAAAGCGTATGCGATGAAAAGGTATCTAAAAAGGCATATGGTTTGCCATACGGATTTCCCGAGATACAGGTGTCCAAAGTGTGGGCTGAGATTCAAAATCAAGTCAGAGTTAGAGTCTCACATTACCACGCATATACGTGGTGCACCTTATGCCTGTAGCCAATGTCCACGACTGTTCAATCATAAGGGTAACTACAAGCGACACTTGATCACTCATTTGGACCCTCAAGGTCTTCATCTACCCAAATATCCCTGTAAAGTCTGTGGGAAACGATTTCTAAATAATCGTACTTTGGAGACTCATATGCGTGTTCATACTGGTGAAAAACCGTTCAAATGCGATGTTTGCGGACGATCATTTTCGCAACAAGGCAACTTGTTGAATCACGTAAGGATCCATTCGAATCCTCGAAGTTACACGTGTGAAGTTTGCGGAAAACGATTTAACCAAAGGGCAACTCTGAGAGATCATAGTCTTCTCCATACGGGAGAGAAACCGTATGTCTGTAATGTTTGTGGAATAGCGTTCACGTTTAGCGCCGCGTTGAGACGTCACATGTGGACTCATACTGGTGGAAAACCGTTCGGATGTGAAATCTGTAGTGCTCGTTTCGTTGGAAAGTATGATCTACGACGACACATGAGGATACACACCGACAGACCTAAAacaaaacgaaggaaaaatgtaattaagtCGAGCAGCGAGCAAGAGACTAAAGAAGAGAACGGTGTAATTTCCGATCACCCTGATACAGACACCGTTCTGATAGAACAGGTTCTACTAACTCAGGATGTCACACAGGTTGTACAGCAACAAGAGtctgagaaagaaaatgtggATGCTCTTTTTAATCTTATACAATATGGATAG
Protein Sequence: MSWEISCADMCRACMKVDGVLLPMYDDDTISQKNLPDKLAELASIQIDKFDGLPNMLCAKCAYRTDAFYDFKLQVQATEKKLRKMFETQIRYAIKEEAISNDFEPDSSEQSNELLQAKLLDDKQDIKPLSNADSSEEFLPGEMNMNDKGEQFDMSELVEESEEFNKAEISELRGIIISKLSEAEVDPEKRLKGEIPDEISKIFESQQLDYTIMYIPEEDVSLEDVGHVNTDNSVSCDPIKLDDNKEMIETSCNGELLDEPMGSEEFLNAVCNEKNVEMETSRIHNDKIAILEEKSRERMNGKHIRKVSLEVHPHADDSEDSDSDYFVDPKDNILGSLNDTITRIKEIKLEDDVVQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCESHRELRTHVKTHTGQFPYSCFICSKAYAMKRYLKRHMVCHTDFPRYRCPKCGLRFKIKSELESHITTHIRGAPYACSQCPRLFNHKGNYKRHLITHLDPQGLHLPKYPCKVCGKRFLNNRTLETHMRVHTGEKPFKCDVCGRSFSQQGNLLNHVRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICSARFVGKYDLRRHMRIHTDRPKTKRRKNVIKSSSEQETKEENGVISDHPDTDTVLIEQVLLTQDVTQVVQQQESEKENVDALFNLIQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118167;
90% Identity: iTF_00118167;
80% Identity: -