Basic Information

Insect: Habropoda laboriosa
Gene Symbol: -
Assembly: GCA_001263275.1
Location: NW:299536-304249[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1e-05 0.00057 19.4 1.2 1 23 148 170 148 170 0.97

2 15 0.00062 0.035 13.7 1.0 3 23 178 198 177 198 0.99

3 15 5.7e-05 0.0033 17.0 0.0 1 23 294 316 294 316 0.98

4 15 0.41 23 4.9 0.1 1 23 322 345 322 345 0.96

5 15 2.2e-05 0.0012 18.3 2.0 1 23 371 393 371 393 0.98

6 15 1.2 70 3.3 0.0 1 23 408 430 408 430 0.86

7 15 0.38 21 5.0 0.4 2 23 437 459 437 459 0.94

8 15 0.0028 0.16 11.7 3.0 2 19 467 484 467 488 0.95

9 15 0.00014 0.0078 15.8 3.5 3 23 496 516 494 516 0.97

10 15 0.015 0.85 9.4 0.0 3 23 523 543 522 543 0.96

11 15 5.8e-06 0.00033 20.1 0.4 1 23 552 574 552 574 0.98

12 15 0.0025 0.14 11.8 0.2 3 23 582 602 580 602 0.97

13 15 0.0022 0.13 12.0 0.2 3 23 610 630 608 631 0.94

14 15 0.76 43 4.0 0.0 1 23 645 667 645 667 0.92

15 15 0.0018 0.1 12.3 0.0 1 20 1043 1062 1043 1065 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1e-05	0.00057	19.4	1.2	1	23	148	170	148	170	0.97
2	15	0.00062	0.035	13.7	1.0	3	23	178	198	177	198	0.99
3	15	5.7e-05	0.0033	17.0	0.0	1	23	294	316	294	316	0.98
4	15	0.41	23	4.9	0.1	1	23	322	345	322	345	0.96
5	15	2.2e-05	0.0012	18.3	2.0	1	23	371	393	371	393	0.98
6	15	1.2	70	3.3	0.0	1	23	408	430	408	430	0.86
7	15	0.38	21	5.0	0.4	2	23	437	459	437	459	0.94
8	15	0.0028	0.16	11.7	3.0	2	19	467	484	467	488	0.95
9	15	0.00014	0.0078	15.8	3.5	3	23	496	516	494	516	0.97
10	15	0.015	0.85	9.4	0.0	3	23	523	543	522	543	0.96
11	15	5.8e-06	0.00033	20.1	0.4	1	23	552	574	552	574	0.98
12	15	0.0025	0.14	11.8	0.2	3	23	582	602	580	602	0.97
13	15	0.0022	0.13	12.0	0.2	3	23	610	630	608	631	0.94
14	15	0.76	43	4.0	0.0	1	23	645	667	645	667	0.92
15	15	0.0018	0.1	12.3	0.0	1	20	1043	1062	1043	1065	0.94

Sequence Information

Coding Sequence: ATGAAAATGGATGTTACTGGAGATTTAACACTACAATGGGTGGAAGAGGTGGGAAATGTGATTCACGAAGAAGTGATATATGGTTTGGAGGCACAGCTGGTTGgagcagaagaagaagtgaTAGGAGCTTGCGAAGAAGTTGCAGTTGAAGAAACAGTAGAATCTGTTCCAAATGTTGCTCCTTCAACAGAATCAGAGATATTAATGGTACCACAGACCAATGATATGGAATCTATTTACATAGTTCCACAAGATCAAGGTCATGACTATTTGAATATACAAGTTACAGAAGAAGTAATTGCAGATAGTTGGGATAGATCTGGTCCAGAAGATGGgGTTGAGATATCAGAAACAAAAGTATCTCATGAAAATTTGCTTGAATATGATGACATGGAAATACCATTACCAATAGATCTTGATTCTTATACAAATAGTAGACCTTATCCATGTGACTTTTGTAGCAGAAGGTTTAGGAAAAAAGCAAATTTAATGAATCACATGGTGTCACATCAGACAGATCGTCCTCATGGTTGTAACTTATGTGGAGCACGTTATGCAAGGAAATGTGATCTTATGaatcatttgaaaattcatgcATATGCACCATCTCGGGATGGTCTAGAGGATGATTTAAATGATGATGATTCATTGGCACCAGAGGAAGAAGAGTCTACTAAAGGTAGGCGTAAAAAGGTACAGTCAAGTGTACCAAGAAAGCGTAAAAACAATTCTATTATTCCAAAACGAAGtatggaggataataaaatggaaatggGCAATGGTAATTATGCATCGAGTTCAAGGTGGAATGACCAAATGTCACCTGTATCAACTGAACCTCAAGCACCACGATGGCCTATAACTGATCCAACAAAACCATATGTGTGTCAGTACTGTGGTGTTGGTTTTGCCAGGGAAAAGGCACTTGCATCTCATGCACGCATACATGGTGGTGATAGTCCATTTGAATGTACATCATGTGGTGATATGTTTTGGGATGTTAACAGTTTAAGAGAACATGTTCGTATTAAACATGGTGGTACAATACAATCTGATACAGAGGAATATGATAATGATGCTACATACACAGGTGATGAGAGATTTGGAGAATTCTATTGCAATACTTGTGGTGTTCCTTTTCATCGTTTGGATTTACTTAAACGTCATCAAAAAATTCATGTCAAACAAGAATCTGATATGGTGGAAGGTCCGAGTCAACATCATGTTTGCAATGTTTGTGGGGAATGGTTTGAAGAGGCTTTGGCATTATTAGCACATGCCGAACTTCATGCTAGATCACCTAGTCGTCGATGTTTATTATGTGGCGAAAGATGTCGTGACGATGCTGAAGTTGCGGAACATGTTCGGCAGAATCATGCCGATGATGCTCCACCAAACACATGCACCCTTTGTGGAAAAACATGTAAAGATAAACGTAGTTTGTTAAAACATTCATGGGTTCACAATGTTGATAAAACTTTCGGATGTACAAAGTGTGGAAAGCGTTTTCACAGCAAAGCTAGATTACGGAGGCATATGGTATCACATCGCAATAAGATGGTAGCCTGTGATGAGTGTGGAGAAGAGTTTCCTGATGGTAGAGCTCTCGTTAGCCATCGTTATTCACATAATAAAGATTTACGTGGTCGTTCTTTCCCATGCCGAGAATGTGGAAAAACATTTGGAAGTCGCAGTTCACAGCAAATCCATATTCGTATTCATACTGGAGAAAGACCATATGGCTGTAGATTTTGTTGGAAAGCATTTGCTGATGGTGGTACTTTGAGAAAACATGAACGTATTCATACAGGCGAGAAGCCGTATGGATGCGCAATTTGTCCGCGTGCTTTCAATCAAAGAGTTGTTCTCAGGGAACATGTACGTGCTCATCATTCAGGTCCTGATCCAAAATGTGTAGGTAGCATTACTCCATACTTATGTAAAGTATGCGGTGATGCATATGGAACGTCAGAAGAAATAGTTGCTCATATCGTACAACATTGTGACGATAATACTGCATTAAGACGTCAACCACAAACTGGACCGCGTAAATATAAAAGAAGACGTAAATTGAAATCTCATGAAACTAACACGATGTTGCGTATGAGTGAGCAATATGATATGATGGAAGGTGGTACTGATTCAGATGacaatacaaaaagaaaacttggaagaaaaaataagcaaCATCGATCGAACGTTGAGGAAGGTTATCAAAATGTTCTTAAAAGTTTCGAGAGCtctttacaaaatataaattcgatCGTTAGTAATTCAAAGTTAAATCCAGGAAAATCCAAGCTCTCTAAGAAGAAGcttagaaaagaagaaaaaaagaatgaagcTCAAGCTTCGTGTCAACCTGGTAGACCAAAAATGATTCATACCCAAAAAACAAGAGTGCCTGTAGAAATTGGTAGTGATGGAGTTAAAAAGGGACAAAAGACTAAAACTATGGTAACAAGGACTCCTAAAATGATGCCACAAGAACATAAAATAGGCGTCTTTCCGGGTGGGGAAAGAAATAGACCAAGAACAAAGAATGTTAGTTATCATATTGAGGGGAAGCTTCAACCGGCACCCGCAACATTCCCGAAACCAAAGGAAGAACCTCCAAGTACTCCGACATCAATACACCAACCATTGCCATTAACTAGTATAAAAATAGAGCctaatttgcaaaatacacAGAATAATAATCATAGAAATAATAATGGTAATATTCTTGGCATTAATAATGAAAAGATAGAATTAACACCTAGAAAAAAATCAGGTGTCttaaaaaagattaaaaagcAAAGAGATGGAATTAAACAAGAACCAATGGATATCGATCAAGATGAGATGCAAAACAATAACAATACAGAAAATCCAGATTCAGATAGACTAATGGATCATACAGTAGATGGAAGTAATTTAGAAGTTGCATTCGAAGCAAGTGTTACAActgaagaagaaattattcttcCTCACGTtgacgaaataaataataccgAAGATATGGGAACTGGAAATGTAAAACTTAGTGTAAAAGTTGAATCGACACCTGAACGAATGTTGGCTGTTCATGGTGTTATAACACCTGTGGATGATATTCCAGAAACCATAATACCAGATGCTGTAGAATATACGTGCGAAATGTGTTCCGCAGTATTTTCCAGCCGAGCAGAATTGTTGGTCCATGTTCCAATAcacatttga
Protein Sequence: MKMDVTGDLTLQWVEEVGNVIHEEVIYGLEAQLVGAEEEVIGACEEVAVEETVESVPNVAPSTESEILMVPQTNDMESIYIVPQDQGHDYLNIQVTEEVIADSWDRSGPEDGVEISETKVSHENLLEYDDMEIPLPIDLDSYTNSRPYPCDFCSRRFRKKANLMNHMVSHQTDRPHGCNLCGARYARKCDLMNHLKIHAYAPSRDGLEDDLNDDDSLAPEEEESTKGRRKKVQSSVPRKRKNNSIIPKRSMEDNKMEMGNGNYASSSRWNDQMSPVSTEPQAPRWPITDPTKPYVCQYCGVGFAREKALASHARIHGGDSPFECTSCGDMFWDVNSLREHVRIKHGGTIQSDTEEYDNDATYTGDERFGEFYCNTCGVPFHRLDLLKRHQKIHVKQESDMVEGPSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAEVAEHVRQNHADDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRYSHNKDLRGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSITPYLCKVCGDAYGTSEEIVAHIVQHCDDNTALRRQPQTGPRKYKRRRKLKSHETNTMLRMSEQYDMMEGGTDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFESSLQNINSIVSNSKLNPGKSKLSKKKLRKEEKKNEAQASCQPGRPKMIHTQKTRVPVEIGSDGVKKGQKTKTMVTRTPKMMPQEHKIGVFPGGERNRPRTKNVSYHIEGKLQPAPATFPKPKEEPPSTPTSIHQPLPLTSIKIEPNLQNTQNNNHRNNNGNILGINNEKIELTPRKKSGVLKKIKKQRDGIKQEPMDIDQDEMQNNNNTENPDSDRLMDHTVDGSNLEVAFEASVTTEEEIILPHVDEINNTEDMGTGNVKLSVKVESTPERMLAVHGVITPVDDIPETIIPDAVEYTCEMCSAVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: iTF_01420417;
80% Identity: -