Hlab002779.1
Basic Information
- Insect
- Habropoda laboriosa
- Gene Symbol
- -
- Assembly
- GCA_001263275.1
- Location
- NW:1323535-1329895[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.083 4.7 7.0 0.9 1 23 384 406 384 406 0.94 2 18 0.00067 0.038 13.6 0.9 2 23 441 462 440 462 0.98 3 18 0.00045 0.026 14.2 1.0 1 23 669 691 669 691 0.96 4 18 0.0015 0.084 12.5 0.4 2 23 695 716 694 716 0.96 5 18 0.0097 0.55 10.0 3.3 1 23 822 845 822 845 0.94 6 18 0.00011 0.0062 16.1 0.5 1 21 852 872 852 876 0.92 7 18 0.0013 0.075 12.7 3.4 2 23 955 976 954 976 0.95 8 18 0.00019 0.011 15.3 4.2 1 23 1035 1057 1035 1057 0.96 9 18 0.00025 0.014 15.0 0.7 1 20 1062 1081 1062 1083 0.94 10 18 0.037 2.1 8.1 0.5 2 23 1094 1115 1094 1115 0.97 11 18 2.5e-05 0.0014 18.1 0.6 2 23 1154 1175 1153 1175 0.97 12 18 2.3e-05 0.0013 18.2 1.6 1 23 1180 1202 1180 1202 0.95 13 18 0.00013 0.0072 15.9 2.9 1 23 1208 1230 1208 1230 0.98 14 18 4e-06 0.00023 20.6 0.4 1 23 1246 1268 1246 1268 0.95 15 18 3.3e-07 1.9e-05 24.0 0.6 1 23 1274 1296 1274 1296 0.99 16 18 3.6e-05 0.002 17.6 0.2 1 23 1302 1324 1302 1324 0.97 17 18 0.00013 0.0075 15.8 4.1 1 23 1330 1352 1330 1352 0.96 18 18 0.0093 0.53 10.0 0.4 1 20 1358 1377 1358 1379 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCATGGAAATAAATACGTCCGATTCGACACAAAACGAAGAGGAGAGCATCGTATCGACGGTAGAAATATGCCGTGTTTGTCTTCTTGGTAATCTGGTGATGCGAGACTTGTTTCTGGAAAGTGAGGTTGCTTCCCTTTCGGCAAAGGCGATGAGTTTCGCTAATGTTAAGATGTTACCTGGGGATGGCTTACCAACGCGCGTCTGCTGTATATGCGCGGACAAACTCGAATCCGCGTACGAATTTAAGCTACAGGTGGAACAAGCGGACACCGTTCTCAGAGAAAGATTCGTTACGATGAACATCAAGGAAGAACTGTTTTTCGACGAAGTTGAAGTACACTTGGAGGCGGCAGGTAGAAACGAGAATATAAGTGAAATGCACGTGGAGAATGATTATCAAAATACCGCTGAAACTCTGACGTCGATGTCTCCGGAAGAGAAGTCGTCGCTTTTGAAGGACCAATTGGCATTGTTGCAAGTGGAAAAGTTAGCTGAACAGGAACAAGCTATAAGAGAACAGAACGATGGATCTGTAATAGAAGAAGTGATAGATGAAACCATTTCTACAGACCACACAACTGAACATTGTGTAAACCACGATGAATTGGATATTAAAGATATGATGGTAGACAGCTCCACCAAGGACCAACAGATGCAGTTAAGACACGAATGTCAGAATAATAGTTGTCTGGAAAGTATCCCAACGGTGGAACATGATTACATATTACACCAGGAATGTATATTATCCAATGATTGTGAGCAACAACAGGAACAGCAGGAACAAGAGGTAGAACAGGAAGAAGAGGAGCAGCAGCACAAGCATCACCAACTTACAGACGAAGGATCCTTTCAACGCGAAGATTGTGCAGAATACGTAAATCTGTTGGTAAAAGCGGCCGATGCTACTACGAATCAAGAAGAAGGTGAAgatgaaatggaaaaatcgaATATTACGATTATGGATGTTAAGTCGGAACGAGAGTCTCACTGTCAAAATGAAACAAGGCGAAGTAAACGTAGATCAGTCCGGCGAAACTTGGAAACGAAACGAGACTCCGacgaggaaaattattttgagaatttgaatttaagCTCGAGACTGAAGAAAGCTCAGGCATCCGATAAACccgagaaaattttctttctttgctatTTATGCGACaaggaatttttatcgaagaacGTTTTGAAGGAGCACATGTATTCTCACGAAGAAGTTAGAAAGACATTGTCTTTGAAGAAAACGCTAGAGACGCCGCAAAAGGTTGCCTGTAATCCCACAAAGTCCCCACCATCCGGTAAAAGATCGAACAAATGTCCTTATTGCGGCAAACAGTATATATACATCATTTCATTCAGTAAACATTTGAAGAaacacgagagagaaaaggaggagggAAAGGAACAACCAATGCcgttagaaatttcattccatgAAGATGAGCACAGTTTAGATCTTGACGATTACGAAGACGCACGTCGACATATGGATGCTGAATGTCGAAAGAGAGTgaaacaaaaaagagaaagcatCGGCTGTGGAGTAAGAACGGTGATAGAAGAAGGCGTAGAGCATGAGATGGAAGAGGAACAGGCCGGGGATGAGAATGAGaatgaggaggaggaggaggaggaggaggaggaggaggaacaggaagaggaaggaaggatgatGGAAGCTGAAAGAAGCGGCGGCAGCGGTGAGTTTGCCGATGCTGACGGTaatgacgacgacgatgacgacgacgacgacgacgacgatgatgacgacgacgacgacgacgacgaccatGACAATAACAGTAACGACAACGACaacaacgacgacgatgacaACGATGGTATTCAGCAAGATCGAGAGCCAACAGGTTCCAAAATGgtaaacgacgacgacgacgacgacgacgacgacgacgatgacgacgacggTGGTGGTCAAGATGGCAATTCGAACAGAGAAGGGGAACAGGAGTGTCGCGTTATTCGTATGGAAACGTATGCGTGTGATAAGTGCtcggagaaattttattcgaaacgtgGTTTGCGAAAACACGCTATTTCACATGCTGCTCTCAGATGCAACGTATGCGAAGAAGAATTCGATTCGTtggagaaattaagaaatcaTCGAGCAAAACACGTGGTCGAAGGTGTATTAACCGAGCAAGATCTCGAAATGGATACAGAATGCGGCGGGGGGCTGATTAACAAAGAAATGACAAATGATTACGGCGACGAGATGGcaggaaaggaaagagaggaaatGAATCGGGAAatggaaaacgaagaagaagcacTGACAAGAGCAGCAGCGGCAGCAGGATTGTTGGGGACAGTTTgggagggggaggaggaggaggaggaggaggaggatcgaAGAAAATCGACAGGTAGAAACACGGAGGTGCATCATCgccatcatcatcatcattatcATCATCATTCGGGGATCAGTTACAGTTGCAAGGTGTGTTGTCAACGGTTCGCAACCAAGGATCTATTGCAGAGGCACACGGAACAACAGCACGAACGCAGCGTGAAAACTTACAAATGCACGCAATGCGGTAAAACGTTCGGTAACGAACTTACTTTGCGCAATCACTTGATAGCCACTAATCATAAAACTTTCGTCCACGGGCAAGAATACGATCCTAATAAACGTATTAAACGGGTGGCCGCGAAAGCAGCCCAGAAAATCATCGACAAAATCAAAACCGAAGATGGTTTGGAAGATtacgacgaggaggaggataATAACGATAAGATCGGTCGTGGTACGTATACGGATGGGAATTACGGTCGGAACAAGCGAGATACGTCCTCGCAGAAGAAACATAATTACAAGAAGGAACTAGAATGCGTGAGTTGCAATAAACGGTGCAGCTCGAAACAATCGTTGACCAAGCATATGGAACAACACGTGAAGGACGAGCAACAACGAACGGTGAAATCGGATAAGCAAAAGCAATCGACGGAGAAAAAGGACCGACAAAGAAACTGTGCGAACGAGGAGGCGGCGGCGGACAACCTGGACAATAGGGACGACGACTTCGACTCGGATTTCGAGAGTGGTTTGGACTGGCCGATGGACAATCACGAGTGTGCAAAGTGTAAGAAACGATACAGCACGAAAAAGTCGTTGTTGCGACATCAGTTGTTGCACGAAGAACCAAACTTCGAGTGTGACATTTGCAACGTCAAGTTCTATCGTAAGGACAAACTGAAGGCTCATTACGACAAGTGTTCGGAGAAGAATCCCGATCAAGTGAGAAAGTGCAATATCTGTGGGGATAGTTTCGAGAACAACGAGATCCTGCGGGAACATAGATCGAAACACGTTACCGAAGGTATACTCACGGAGGAAGACTTGAGAGACATCGAGCCGCGACCCGAGGAGAAGAAGCCGGGCGAGAAGATTGGTAGGAAAAGGAGAACCGACATCGTAGGTTTGGAATGTACCGAGTGTAACAAACAGTACACGTCGAGGAAGGGGCTTTTACGGCATATTCAAGTTCACGAAGGGAAAAAGTATCTGTGCGACATATGCCCGAAGAAGTTCTACCGAAGGGAGCACTTGAAGATACACGTGGCTAAGCACAACATGATCAAACCGTACAAGTGCACGCGGTGCACCAAGCGTTTCATTAAAGAGGAACAATTGACGAATCATTTATCGAAACACGACCGAACGTTTAAGAAGAACAAAGAAACCGACAGCTCGAAGAGATTCCTCTGCGAGATATGCTCCAAGAGTTTCACCCAATCGACCACGTTGATCGCCCACCTTAGGGCGCACAACGGCATCAAGCCGTACGTATGCGAGGTTTGTTCGCGACCGTTCACAACGAACGCCTATTTGAAAATGCATATGCGCACACATACGCAAGAACGGCCGTACATCTGTCAGTACTGTTCAAGGGCATTCGCCAGAGCGGACACGCTAGCCAATCACTTGACTTCGCATACCGGCGAAGCCAAGTATCATTGCAAGTATTGCCCGAAGAATTTCCGTCGCCTCAAATCCCTCAAGGAGCACGTGTTCATTCATACCGGTCAAAGACCTTACGCTTGTCCAACCTGTGATCGACGTTTCAACAATAACGGAAGTAGATACGCTCATAGTAAAAGGTGCAAACAGAATTTCGTACAGAATCAGAATCGTGCTCAAACATTGACAGCGCATGTGCAACCGGTTCAAAATCAACAAAGAGTGTTACAACAAGCCACTCTTGCACAAGGTCAAATAGTTAAGgcacaaaatattaaaaccaTTACCATTACAAGACAACCTGATGCAGTCGCTACTCAACAAACGGTTATGCAACATCAAGAGATATTAATGCCCCTGATCCTTCCTCTCACAGTCACCCTCGCCGATGTTGGCGAAGAAGTAATATTACCAGAAGGAACCAAAATATTCACTACGTCTTAA
- Protein Sequence
- MDAMEINTSDSTQNEEESIVSTVEICRVCLLGNLVMRDLFLESEVASLSAKAMSFANVKMLPGDGLPTRVCCICADKLESAYEFKLQVEQADTVLRERFVTMNIKEELFFDEVEVHLEAAGRNENISEMHVENDYQNTAETLTSMSPEEKSSLLKDQLALLQVEKLAEQEQAIREQNDGSVIEEVIDETISTDHTTEHCVNHDELDIKDMMVDSSTKDQQMQLRHECQNNSCLESIPTVEHDYILHQECILSNDCEQQQEQQEQEVEQEEEEQQHKHHQLTDEGSFQREDCAEYVNLLVKAADATTNQEEGEDEMEKSNITIMDVKSERESHCQNETRRSKRRSVRRNLETKRDSDEENYFENLNLSSRLKKAQASDKPEKIFFLCYLCDKEFLSKNVLKEHMYSHEEVRKTLSLKKTLETPQKVACNPTKSPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEREKEEGKEQPMPLEISFHEDEHSLDLDDYEDARRHMDAECRKRVKQKRESIGCGVRTVIEEGVEHEMEEEQAGDENENEEEEEEEEEEEEQEEEGRMMEAERSGGSGEFADADGNDDDDDDDDDDDDDDDDDDDDDHDNNSNDNDNNDDDDNDGIQQDREPTGSKMVNDDDDDDDDDDDDDDGGGQDGNSNREGEQECRVIRMETYACDKCSEKFYSKRGLRKHAISHAALRCNVCEEEFDSLEKLRNHRAKHVVEGVLTEQDLEMDTECGGGLINKEMTNDYGDEMAGKEREEMNREMENEEEALTRAAAAAGLLGTVWEGEEEEEEEEDRRKSTGRNTEVHHRHHHHHYHHHSGISYSCKVCCQRFATKDLLQRHTEQQHERSVKTYKCTQCGKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDEEEDNNDKIGRGTYTDGNYGRNKRDTSSQKKHNYKKELECVSCNKRCSSKQSLTKHMEQHVKDEQQRTVKSDKQKQSTEKKDRQRNCANEEAAADNLDNRDDDFDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRAQTLTAHVQPVQNQQRVLQQATLAQGQIVKAQNIKTITITRQPDAVATQQTVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118149;
- 90% Identity
- -
- 80% Identity
- -