Basic Information

Insect: Habropoda laboriosa
Gene Symbol: -
Assembly: GCA_001263275.1
Location: NW:414107-431750[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.041 2.3 8.0 0.1 3 23 331 351 329 351 0.96

2 20 2e-05 0.0011 18.4 1.3 2 23 364 385 363 385 0.95

3 20 0.00029 0.016 14.8 2.4 1 23 391 413 391 413 0.96

4 20 3.1e-05 0.0017 17.8 0.1 1 23 419 441 419 441 0.98

5 20 0.00037 0.021 14.4 0.6 1 23 447 469 447 469 0.97

6 20 0.00012 0.0069 15.9 5.4 1 23 480 502 480 502 0.97

7 20 9.5e-07 5.4e-05 22.6 0.2 1 23 511 533 511 533 0.98

8 20 5e-06 0.00028 20.3 1.1 1 23 539 561 539 561 0.98

9 20 4.1e-05 0.0023 17.4 5.3 1 23 567 589 567 589 0.98

10 20 0.00082 0.046 13.3 5.9 1 23 595 617 595 617 0.97

11 20 0.021 1.2 8.9 2.3 1 23 752 774 752 774 0.97

12 20 2.6e-06 0.00015 21.2 1.8 3 23 787 808 786 808 0.96

13 20 0.00035 0.02 14.5 6.1 1 23 814 836 814 836 0.98

14 20 0.12 6.6 6.6 0.4 1 23 840 862 840 862 0.97

15 20 5e-06 0.00028 20.3 1.5 3 23 870 890 868 890 0.97

16 20 0.00012 0.0067 16.0 0.1 1 23 896 918 896 918 0.98

17 20 0.086 4.9 7.0 0.3 1 23 924 946 924 946 0.95

18 20 4.3e-07 2.4e-05 23.7 0.1 2 23 953 974 952 974 0.97

19 20 7.6e-07 4.3e-05 22.9 0.6 1 23 980 1002 980 1002 0.98

20 20 7.8e-08 4.4e-06 26.0 2.8 1 23 1008 1030 1008 1030 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.041	2.3	8.0	0.1	3	23	331	351	329	351	0.96
2	20	2e-05	0.0011	18.4	1.3	2	23	364	385	363	385	0.95
3	20	0.00029	0.016	14.8	2.4	1	23	391	413	391	413	0.96
4	20	3.1e-05	0.0017	17.8	0.1	1	23	419	441	419	441	0.98
5	20	0.00037	0.021	14.4	0.6	1	23	447	469	447	469	0.97
6	20	0.00012	0.0069	15.9	5.4	1	23	480	502	480	502	0.97
7	20	9.5e-07	5.4e-05	22.6	0.2	1	23	511	533	511	533	0.98
8	20	5e-06	0.00028	20.3	1.1	1	23	539	561	539	561	0.98
9	20	4.1e-05	0.0023	17.4	5.3	1	23	567	589	567	589	0.98
10	20	0.00082	0.046	13.3	5.9	1	23	595	617	595	617	0.97
11	20	0.021	1.2	8.9	2.3	1	23	752	774	752	774	0.97
12	20	2.6e-06	0.00015	21.2	1.8	3	23	787	808	786	808	0.96
13	20	0.00035	0.02	14.5	6.1	1	23	814	836	814	836	0.98
14	20	0.12	6.6	6.6	0.4	1	23	840	862	840	862	0.97
15	20	5e-06	0.00028	20.3	1.5	3	23	870	890	868	890	0.97
16	20	0.00012	0.0067	16.0	0.1	1	23	896	918	896	918	0.98
17	20	0.086	4.9	7.0	0.3	1	23	924	946	924	946	0.95
18	20	4.3e-07	2.4e-05	23.7	0.1	2	23	953	974	952	974	0.97
19	20	7.6e-07	4.3e-05	22.9	0.6	1	23	980	1002	980	1002	0.98
20	20	7.8e-08	4.4e-06	26.0	2.8	1	23	1008	1030	1008	1030	0.99

Sequence Information

Coding Sequence: ATGTCCTCCCTCGATTATCTGGACCTGTGTCGGCTGTGTCTCGTGAAGGACCGTGTTTCGGTACCGATTTTCGAGGGTGAAGGAGACGTACGGCAGATATCTCTTAAGATCGCCGCCTGCCTACCGGTCAAGGTTGCAAGAGAAGACAAGTTACCTAAAAAAATATGCGATGACTGTGTgtataaaatagaattattttatcaattttggAATACAACAGCAAACGCAGAGAAACAACTTTTACAATGGCTTGGGGAAGTCAATTTAGGAGACAAGCAGGGTTATGTTACCAATGTTCTCAATCCGAGTGTAATGAAACAAGAACAGAATTCAGAGAACAGGTTAGATGGAAATGTGATGCAGCAAGTGGGTGAGCATCAGAACAATATGGGTATGGGTATGATGGACAACATGGGCTTGGGTATTCCTATGATGATATCCAGTGCTAATCAACAACAAATAACCTCAGTTCCTATGGACACAAGCGGTAATTCTGTACAAACCGTTCAGGCAGTGCCTGGTCCAAGTTCACAAACCACACATAACCAAATATCACAAAATCAAACAAGCTCTATGCAAcaagaagacgaagaggaaAGTAGTGAAGATGAAGAGAACTCTGACGATGAATGTGATGGAGATGAAGGCCTACCTGTAAAAGAAGAGAGCGAAGAAGATCCCAGTAATAGAACAATAGAGCCTACAACCTTTGTAAATGTTTCCTTGGCGTGTGATGAAGCAGGTCCCTCTGGGCTACAGCAACAGAAGATCTCAGATATGCCTGAGATGCCAATTCCACAACCAGCTGATGGGGATCCCAAACCTGGATATTTTGTGTCAAAGCTTGAGATGCTACCGCAGGATCAGCAGCAGTGCGGCCCGAACGAGATCTTCGATCACGAAGACACCGAGCACAGCCTGTTAATCACCGACGATCGTATGCCCAAGGTGGAGAACGCGGAGATAATCATCTCGGACGGGATCGTTCACTGCGAACTATGCGGCGATGGTTTCGTATCCGAGCAGGCACTCGCGTTGCACCTGAAGATGCACGAACAGGACGAGATACAGTTGCAAGACGACCAGCTCGTGTGCGAGCATTGCGGTTGCAGCTTCTCCACGGCTACCGCGTTGCAAGAGCATCAATTGGAGCACGAGACAGACGAGAGTCACGCTTGCGAGACGTGCGGCTTCGTTACCACGCACAGAGAGAGCCTGATTGCTCATCAGAAGCGGCACAACATCGACTACAAGTACGAGTGCGAGGTATGCGGCGCCAGCTTCGTTTCTTCCACCAGCTACGAGGAGCATCAGTCCATGCATTCCCACGAGAAGCCGTTTCAATGCGAGATATGCAGCGCCACGTTTCGTTATCGACAGGGTTTGAGGCTGCACGCGAAGCTCCATCAGCCTGATTACGTGCCGCCTCAAAGGAAGCACCACTGCGAGCTGTGCAACAAACGTTTCTCCAGGAAGCAGGTACTGCTGGTTCACATGAAGACGCATGGTAACGTGGGTCCTCAGAACGAGTACATCTGTCCGGTTTGCGGTAAAGCTGTGTCGAGCAAGACGTACCTGACCGTGCATCTGCGAAAGCACACGGGAGAGAAACCGCACGTCTGTGACCTCTGCGGGAAAGGTTTCATCTCGCAGAATTATCTGAGTGTTCATCGGCGCACCCATACGGGCGAAAGACCCCACAAATGCACCCATTGCGAGAAACGATTCACCCAACGAACCACGCTGGTGGTACATCTGAGAGGTCACACAGGCGACCGACCGTATCCTTGCACATGTTGTCACAAGTCGTTCGCCTCGAAAACAATGCTGAACTCTCATCTGAAGACGCACGCGAAGCAGAGCGCGCGGCAACAACAGgaacagcagcaacagcaacagttGCAGCAGGAGCAAGAGATACAGCATCAGGAACAGTCGCTCGATTTTCAGACACCTTTCTCCCTGCTGTGCCAGGAGGTCCTCGACCGGGAAATGAAAGTAGAACCTATAGAAACGATGGACATGGAATTGGTCAAGTACCAAAGTGACGTGTGCACGGTAGAAGAGTTCGAACAGATCAGCCACCAGGAGATAGTTACCGAGACGTTAGAGTACACCGATGAAACGGAGATGGACATGatagaagaggaggaggaggacgaggaggaggaggaggaggagcaaTACGAGGAGGTTGAGAAGCAACACTTGGAGGGGAAATGCAGGACGAACAGCAGCAGGCGTGCTACGTTCTACGAGTGCGAGATCTGCAACAAGAGAATGCGGAAAAAGTTGCAATTCCTCAAGCACAGGCAGGATCACGAGAGGAACGACGTGGAGGCAGCGGCAGCCGGACATTGCGAGGAGTGCGACAAAAGCTTCACCGACGAGGAGAAGCTGAAGAAGCACATGATCAAGGTGCATCAGAAGGAGAAACCGTTTCAATGCGAGCGTTGCACGAAATGCTTCAAAACCGAGGAATTCCTGAAGACTCATCTGAAACAGCACAACAAACGTTTCACCTGCGACGTATGCGGCGTCTCCAAGGTATCCGGCTACGATCTACGTTTGCACAAGAAGAAACACAACGAGGAGTACGTGACTCACTGCGAGATATGCGGCAAAGGTTTCTACACGAATCAGACACTCGAGCGACACTTGCTCACCCATACCGGCGAGAAACCTTACATCTGCAAGGTGTGCAACACACCTTACGCGAGTGCAGCCTACCTGAGCACGCACATCAAGTCACACGGCGAGCGGGAGAAGTACAAGTGCAACGTGTGCAACTTTGAGAGTTTCTGGAAGGCCGCGTTGAAGGTGCACCTGAAGATACACACGGGGGAGAATCTGATCACCTGCGAGATCTGCGGGAAATCGGTGTCGAGCAAGGCATACCTGCAGATTCACATGCGTATACATTCGGGGGAGAAACCGCACGTTTGCGAGGTGTGCGGCAAAGCGTTCAGCGTTCGAAAGTATCTGATCGTGCATCTGAGAACGCACACGGGCGAAAGACCGTACGAGTGTAAGATGTGCCAGAAAAGGTTCACGCAGCAGAGCTCGTTGAACTCGCACATCAAGACGCATAACGAAAGAAAGTGA
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQISLKIAACLPVKVAREDKLPKKICDDCVYKIELFYQFWNTTANAEKQLLQWLGEVNLGDKQGYVTNVLNPSVMKQEQNSENRLDGNVMQQVGEHQNNMGMGMMDNMGLGIPMMISSANQQQITSVPMDTSGNSVQTVQAVPGPSSQTTHNQISQNQTSSMQQEDEEESSEDEENSDDECDGDEGLPVKEESEEDPSNRTIEPTTFVNVSLACDEAGPSGLQQQKISDMPEMPIPQPADGDPKPGYFVSKLEMLPQDQQQCGPNEIFDHEDTEHSLLITDDRMPKVENAEIIISDGIVHCELCGDGFVSEQALALHLKMHEQDEIQLQDDQLVCEHCGCSFSTATALQEHQLEHETDESHACETCGFVTTHRESLIAHQKRHNIDYKYECEVCGASFVSSTSYEEHQSMHSHEKPFQCEICSATFRYRQGLRLHAKLHQPDYVPPQRKHHCELCNKRFSRKQVLLVHMKTHGNVGPQNEYICPVCGKAVSSKTYLTVHLRKHTGEKPHVCDLCGKGFISQNYLSVHRRTHTGERPHKCTHCEKRFTQRTTLVVHLRGHTGDRPYPCTCCHKSFASKTMLNSHLKTHAKQSARQQQEQQQQQQLQQEQEIQHQEQSLDFQTPFSLLCQEVLDREMKVEPIETMDMELVKYQSDVCTVEEFEQISHQEIVTETLEYTDETEMDMIEEEEEDEEEEEEEQYEEVEKQHLEGKCRTNSSRRATFYECEICNKRMRKKLQFLKHRQDHERNDVEAAAAGHCEECDKSFTDEEKLKKHMIKVHQKEKPFQCERCTKCFKTEEFLKTHLKQHNKRFTCDVCGVSKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPYICKVCNTPYASAAYLSTHIKSHGEREKYKCNVCNFESFWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKMCQKRFTQQSSLNSHIKTHNERK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -