Gvir021918.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- nfxl1
- Assembly
- GCA_956483585.1
- Location
- OY101442.1:76162095-76165470[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3 4.2e+04 -8.1 6.4 15 19 149 153 148 153 0.82 2 20 0.19 2.7e+03 -0.3 0.4 4 10 184 190 183 190 0.95 3 20 2.7e-08 0.00037 21.6 16.0 1 18 198 214 198 215 0.98 4 20 2.8 3.8e+04 -4.0 2.3 6 10 241 245 240 245 0.88 5 20 7.6e-05 1.1 10.6 13.0 3 19 253 270 251 270 0.90 6 20 3.4e-09 4.8e-05 24.5 12.8 1 19 305 323 305 323 0.99 7 20 1.3 1.9e+04 -3.0 0.5 1 7 348 353 347 355 0.49 8 20 2.3e-06 0.031 15.5 8.8 1 18 358 375 358 376 0.95 9 20 0.46 6.4e+03 -1.5 0.4 1 5 385 389 385 394 0.75 10 20 3 4.2e+04 -5.0 2.3 5 10 399 404 399 404 0.91 11 20 0.0001 1.5 10.1 16.5 1 18 410 427 410 428 0.98 12 20 2.3e-10 3.3e-06 28.2 14.5 1 19 437 455 437 455 0.98 13 20 0.0081 1.1e+02 4.1 6.5 9 19 500 510 498 510 0.89 14 20 0.00066 9.1 7.6 5.7 1 11 522 531 522 532 0.95 15 20 0.48 6.7e+03 -1.6 0.9 6 10 591 595 590 595 0.90 16 20 8.7e-06 0.12 13.6 5.6 1 11 601 611 601 612 0.96 17 20 3 4.2e+04 -5.0 2.1 15 18 625 628 625 629 0.84 18 20 0.016 2.2e+02 3.2 14.6 3 18 641 656 640 657 0.91 19 20 3 4.2e+04 -6.8 3.1 10 13 664 667 663 667 0.68 20 20 2.6e-07 0.0036 18.5 12.0 1 18 708 727 708 728 0.91
Sequence Information
- Coding Sequence
- atgcCGCCTACCAAAAATCCGACTCAAAAATTCAATGAGGCTCATGCAAGAAATATAGAAGTTGCTAAAAAGCTGGTTGAAAATTATGTATCGTCGTCGGAAGATGAGGACGAATTGGATGGGAccataattttaaAATCATTGTATCAACATTATAATACTCGCAAGGAAGATGCACATCTTTTAGCAAAGACGGCTGgctttttagaaaatgttttgcAAACAGGAGCTGCTACGTGTCTTATTTGCATAGGAAGCGTAAAACGCTCGAATGCAATATGGTCTTGTAAATATTGTTATTGCTTCTTTCATTTGAACTGTATTCAAAGGTGGTCTAATGATAGTATGGCACAGGCAAAAGCACAAAAGCAAAATGAACAGGGATACTACAATCATATGGGAGAATATGTGCCGCCTAAAATGCCCAAGGCGTTACATTGGTGTTGTCCACAATGCAGAAGAGAATTCGGACAAGGAGACAGACCATCGGAATATGAATGCTTTTGTAGCAAAGAAATTAATCCGCCATCGCAACCCTGGCTAGTTCCTCATTCTTGCGGTGAAATATGTGGCAAAATTCTAATGCCTAATTGCGGGCATAAATGTACGTTACTATGTCACCCTGGCCCGTGTCCACCTTGTGCCCAATACGCTATTACATCATGTAAATGTGGAAAATCTCCACCAAAATCCGTGCGTTGTATTGACAAGTTTTGGGAATGTCAGAAAAAATGTGAATTGCTACTGCCCTGTAAGGAGCACCTATGTAAAAAGTTATGTCACAAAGTCGGTCAATGTCCGCCTTGCCAACAAACAAGTATGCAACCTTGTGAATGTGGTAGAGAAACGGCGAAGCGTCAATGTTGTGAACAGAAGTGGCATTGTAAAACATCATGTGGGAAAACTTTTGCTTGTGGCTTACatacttgtaaaaaaatttgccatTCAGGTGACTGTGGAGATTGTCCTTTAAGTTTGCCGCGGTCCTGTCCGTGTGGCAAAACTaaaaaagttgGTCCATGTTCTGAAGTGATAGATACTTGTGGCGATACTTGCCAAAAACTACTTACTTGCAGTTTGCACGCTTGTACGCAACGCTGTCATAAAGGAAATTGTAATTTATgtttaattataacaaaaaagaaatgtcGCTGTGGTATGCACGAAAAAGAACTACCATGTTCCAAGGAATTTACTTGTGAAaccaaatgtaaacaaattcgGGATTGTGGCAAGCATCCTTGCAATCGTAAATGCTGCGATAGCAATTGTCCACCATGTGATAAAGTATGTAACAAATCATTATCGTGTGGTAAACATAAATGCCAGTCGATTTGCCACAAGGGCCCTTGTTATCCTTGCCAGCAAAAATCACAAATTAATTGTCGTTGTGGTAAATCGAAGAAGAGTGTACCCTGCGGTAGAGAGCGTACGGCACGTGTGATTTGTTTGGAAACATGTCGCATTCCTTCAAAATGTCATCATGAAATTAAACACCGCTGTCATAAAAATGAATGTCCTCCTTGTTCCTTGCCATGCGGTTTACCAAATGACACCACAAAGTGCGGTCATAAGTGCATGGCGAAATGTCATGCATCTGTTAGGGTAGCTAAGAAACCAAATTCTGATACCACGAGCATATGGGAGCCTACTAAACAGtttgaattaaaaaaaatgcccCATCCCCGATGTGAAGAAAAAGTAAGCGTAACTTGTATTGGTGGCCATGAAACTGCCGATTGGCAATGTTGGAATTCTAAACCTACATCCTGCCAACGTTTGTGTAATCGTTTTCTAAGATGTGGTAATCACAAATGTACTTTAGTCTGTCACGCAGTGGCAAATTTAAAAGACATGAAGGAGCAAGTTGGCTGTTCTCCATGTGAGGAAGGTTGCAAAATCCCTCGACCCGAAGGATGTACTCATAACTGTCCTAGACCCTGTCACCTACCGCCTTGTAATTCTTGCAATGTTGCtattaaaactaaatgtcaTTGTGGCTTAATGCTCGTTGTTTACAAATGCAACGATTACTTCAATACAGAAGCCAGCGAAGGCGAAATTTTGGAGAaacaagaaaacttaaaaagttgCGGAAATAGATGCGtaaaaaattatGCTTGTGGTCATCGCTGCGCAGCCAAATGTCATTCTGGGCCTTGCCCATTTCCAGAGTCTTGTCGTAAAAAATTGCGTATATACTGCGATTGCAAACGTTTAAAATCAGATATTTCCTGCGATAAACATCGTGGCGGTCTTCTAAAATTACAATGCGATGAAAATTGTGCTGAAACCCAAAAAGCTCTAGAACAAGAACGCCGGAATGATGAGCAAATGCGTAGGAAACAAGAAGAAGAACGCAATCGTTTAGAGGTGGaacagtttgaaaaaaaattttccaaacgcAAACCTAAAGAACGTAAAACATTGGAAGTGAAACAGAAGAAACCTGTTAACTGGACACTAATCGGGGTTTATGCTGGTATTGCTGTAGCAGTGTTGTTAGCAGTTGCTTTAGCTTTTTACGAGGAtcattaa
- Protein Sequence
- MPPTKNPTQKFNEAHARNIEVAKKLVENYVSSSEDEDELDGTIILKSLYQHYNTRKEDAHLLAKTAGFLENVLQTGAATCLICIGSVKRSNAIWSCKYCYCFFHLNCIQRWSNDSMAQAKAQKQNEQGYYNHMGEYVPPKMPKALHWCCPQCRREFGQGDRPSEYECFCSKEINPPSQPWLVPHSCGEICGKILMPNCGHKCTLLCHPGPCPPCAQYAITSCKCGKSPPKSVRCIDKFWECQKKCELLLPCKEHLCKKLCHKVGQCPPCQQTSMQPCECGRETAKRQCCEQKWHCKTSCGKTFACGLHTCKKICHSGDCGDCPLSLPRSCPCGKTKKVGPCSEVIDTCGDTCQKLLTCSLHACTQRCHKGNCNLCLIITKKKCRCGMHEKELPCSKEFTCETKCKQIRDCGKHPCNRKCCDSNCPPCDKVCNKSLSCGKHKCQSICHKGPCYPCQQKSQINCRCGKSKKSVPCGRERTARVICLETCRIPSKCHHEIKHRCHKNECPPCSLPCGLPNDTTKCGHKCMAKCHASVRVAKKPNSDTTSIWEPTKQFELKKMPHPRCEEKVSVTCIGGHETADWQCWNSKPTSCQRLCNRFLRCGNHKCTLVCHAVANLKDMKEQVGCSPCEEGCKIPRPEGCTHNCPRPCHLPPCNSCNVAIKTKCHCGLMLVVYKCNDYFNTEASEGEILEKQENLKSCGNRCVKNYACGHRCAAKCHSGPCPFPESCRKKLRIYCDCKRLKSDISCDKHRGGLLKLQCDENCAETQKALEQERRNDEQMRRKQEEERNRLEVEQFEKKFSKRKPKERKTLEVKQKKPVNWTLIGVYAGIAVAVLLAVALAFYEDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313435;
- 90% Identity
- -
- 80% Identity
- -