Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101441.1:40560235-40561881[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0053 0.56 11.9 0.4 2 23 235 257 234 257 0.96

2 9 0.00051 0.054 15.1 1.1 1 23 289 311 289 311 0.99

3 9 0.038 4 9.2 3.4 1 23 318 340 318 340 0.96

4 9 0.028 3 9.6 2.2 1 23 348 371 348 371 0.94

5 9 0.00024 0.026 16.1 4.8 3 23 379 399 378 399 0.96

6 9 0.00022 0.023 16.3 0.3 2 23 408 430 408 430 0.97

7 9 0.63 67 5.4 2.2 1 23 438 461 438 461 0.73

8 9 6.7e-05 0.0071 17.9 3.0 3 23 469 489 468 489 0.99

9 9 0.00014 0.015 16.9 4.4 1 23 495 518 495 518 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0053	0.56	11.9	0.4	2	23	235	257	234	257	0.96
2	9	0.00051	0.054	15.1	1.1	1	23	289	311	289	311	0.99
3	9	0.038	4	9.2	3.4	1	23	318	340	318	340	0.96
4	9	0.028	3	9.6	2.2	1	23	348	371	348	371	0.94
5	9	0.00024	0.026	16.1	4.8	3	23	379	399	378	399	0.96
6	9	0.00022	0.023	16.3	0.3	2	23	408	430	408	430	0.97
7	9	0.63	67	5.4	2.2	1	23	438	461	438	461	0.73
8	9	6.7e-05	0.0071	17.9	3.0	3	23	469	489	468	489	0.99
9	9	0.00014	0.015	16.9	4.4	1	23	495	518	495	518	0.97

Sequence Information

Coding Sequence: atggaaaattgtaTAGTTTGTTTAGAATTTAATGAAGACATATTTTCCCGTATTACTACACTATCGAGTGAATGGATGGAAGGGAAAATGCAAAGAATAATTGAGAAACATTTGTGGTGGTGGTATTTGAAGCCGTCCCAAAAAAATGGAATTGTTAGATGGATTTGCCGTAAATGTTGGCAGGAAATATCATCATTTCATCACTTTTACGATAAAGTAGAAAAGTCTCACAGGTATTACCAACGAAGTGTGTCCACCATGAAGCCAATTAacagaaacgaaaaaaaattaaccattgTCAAGCTAGAGGAGAGCGAAAGCTTAGAACCTTCTAATAATGAATTAGAATTAGTTAGAGGACGTCTGAAGGAGAGACCtcaaaaacattacaaaaatataggcaagtttaaaagaaaagcaaTTGATTTTGGGGATGTGAAGGGAGAATTTGGTTTAAGCTCAAATTGTTGTGACACTGATGAACTTGCTTGTGCAAATAGTCTTACTGAAGACAACGAAATACAAAGCAAGGAAAGCGAGCCAATTGTACATATACGAAAGTTTCAGGAAAAACATAAAACTGAACCGATCtgtagtaaaaaacaatttcaaatggaAACTAAAAGAATTAATCTTAAAGAGAATACAACATGTAAAAcagtttactttgacaatttctttaaagaaaGTCAACACAAACTTCAATGCGGTATTTGTAATGAGCCTTTGTCCGACTTTCGTAAACTTAAGTCGCATTACCGTAATGAACACAATACAAAGGGATATGCTATGTGTTGTGGGAATAAGTATTTCAAACGTTGCTTACTATATGACCACCTAAAAGTGCATAGagatccaaatttttttaagtgcacaCTATGTGCGAAAGCCTATGCAACACGTCGTGGTTTCAAAACGCATTTAGAGACACATCAAATACGTGAACGTAAGTACAGCTGTGATGAATGTGGGAAATCATATTTCAAAATGCACATCTTTGAGCGTCACAAATTGACTCACGTGCCGGAATGCGAAAGAAATTTTAACTGCTCACAgtgcaacaaaaaatttgcctCAGATTATTTGCGGCGTCAGCATGAAAATTCAACACATGACAAGAAATATGCCAAAATTTGTGATAAATGCGGAAAATCTTTTAACCACAGTTGTTCGTTTTTACGTCATATGGATGAACATGCTGGAGTACCGCCATCTATGGAGACCTGTGATATATGCGGCGCTAATTTAACAACCAAAAAAGGTCTTAGGGAACACATGAAAATGATGCatttagaagaaaatttaaaggaaCATGTTTGTCCTTATTGCTCAAGAGTCTCGCCAAATCTCAATGCCCATCGTAAACAcgttaaatatacacatattatGCAGCGTAAACATGGTTGCCATTTGTGTGACAAAGCCTTTAGACGTCCTCTAGAATTAAAGGAACATTTATGTACCCATACCGGAGAAGCGTTATACACGTGCACACATTGTCCTCGAACATTTATATCACatgcaaatatgtataaacatcGGAAAATTGTTCATCGCAGTGAATGGGAAGAAAGtcgtttaaataaattgaacaaaaagagTGGCAAAACGACATCGACTGATATGGCAGTAAAATTACAgctataa
Protein Sequence: MENCIVCLEFNEDIFSRITTLSSEWMEGKMQRIIEKHLWWWYLKPSQKNGIVRWICRKCWQEISSFHHFYDKVEKSHRYYQRSVSTMKPINRNEKKLTIVKLEESESLEPSNNELELVRGRLKERPQKHYKNIGKFKRKAIDFGDVKGEFGLSSNCCDTDELACANSLTEDNEIQSKESEPIVHIRKFQEKHKTEPICSKKQFQMETKRINLKENTTCKTVYFDNFFKESQHKLQCGICNEPLSDFRKLKSHYRNEHNTKGYAMCCGNKYFKRCLLYDHLKVHRDPNFFKCTLCAKAYATRRGFKTHLETHQIRERKYSCDECGKSYFKMHIFERHKLTHVPECERNFNCSQCNKKFASDYLRRQHENSTHDKKYAKICDKCGKSFNHSCSFLRHMDEHAGVPPSMETCDICGANLTTKKGLREHMKMMHLEENLKEHVCPYCSRVSPNLNAHRKHVKYTHIMQRKHGCHLCDKAFRRPLELKEHLCTHTGEALYTCTHCPRTFISHANMYKHRKIVHRSEWEESRLNKLNKKSGKTTSTDMAVKLQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -