Gvir030318.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101443.1:78746845-78752385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.8 3e+02 3.4 0.9 2 20 470 488 469 490 0.92 2 16 0.00053 0.056 15.1 1.2 2 19 536 553 535 555 0.95 3 16 0.59 63 5.5 0.7 2 23 597 619 596 619 0.94 4 16 0.8 85 5.1 0.4 5 23 629 647 626 647 0.93 5 16 0.00029 0.031 15.9 1.2 1 23 654 677 654 677 0.96 6 16 0.22 23 6.8 5.5 2 21 685 704 684 706 0.94 7 16 1.5 1.6e+02 4.2 0.1 1 20 715 734 715 736 0.89 8 16 0.084 8.9 8.1 1.6 1 22 756 777 756 780 0.91 9 16 0.11 12 7.7 4.7 1 23 785 807 785 807 0.91 10 16 0.42 45 5.9 0.2 1 23 823 848 823 848 0.96 11 16 0.00054 0.057 15.0 2.9 2 23 889 911 888 911 0.95 12 16 0.0003 0.032 15.8 2.0 2 23 915 937 914 937 0.95 13 16 1.5 1.6e+02 4.2 3.8 1 23 943 966 943 966 0.93 14 16 0.00017 0.019 16.6 0.4 1 23 971 993 971 993 0.98 15 16 1.9e-06 0.0002 22.8 0.9 1 23 999 1021 999 1021 0.99 16 16 0.0062 0.66 11.7 2.1 5 23 1037 1056 1027 1056 0.82
Sequence Information
- Coding Sequence
- ATGGCGGCTAATGTTTCCACAATCAGCAGTGTTTGTTTATATTGCAAAACAAACTCGGCCACAGATGCTGAAAAGGATTTTCACGAAATTTACGATGAAGTGGGATTGGAACTGCAGTTACCCACCTTAGTGGAAacgttttttcatattaaagtaaaaaatgatGGAAAGAAATATCTATGTAATGACTGCGTTAATCATCTTATAGAATTGTATGATTTGGATGAGCATGCCAAAGAGGAAGGGATTGAGGCCCCTCAGTTGGAAAGACTTAAGAACATAAACGATGAAGCGGACTCCATTATAAAAGCGGAAGGTATTAGTAAAGAACGAAGTGGTATTTgcttaaaggaaaaaatttgtCAATTAGCGGGAACTCCTGCTAGTCATTCGACCAAAGAAAAGTCTCAAGTTACCCAACAAAACACCAATACTATTGgatatgaaaatttgaaaatatttcctttaacTCCTGAAACTGACATTAAACGTGTCAACGAACAAAGCGGAACAGAAGATAAAATTGATGATCTTGAATATGAAGACATTGAAACCGTTGAAGACCTAATTGATCAAGATAAAACGTCCACTTTTACATTAACACATCTTCAAGTTGGTGATGATATCGCTGAAAATTTCCCGGAGGAAGAGTTTGTAACTATTAGTGAAAATGAAGAGCCACAAGATTTAAATGAATCAACTTCTAATAGTATAATAGAAGCAACTGAAGTAACAAATCCCAGTGAAACTGAATTCAGCGAGCATATTGAACTTATTGAAGATGACGCAGACGTGAGTATGGAAGTAGAAAATATGGTTGACGCAAACACTTTCAAAGGCAATGAAGAAagagattttataaaatcaaggAGAATAAACGATTATCTCTTCTCCGAAGCAGACAACGGAACAACGGTTAATAATTCGAATAACCAAAATGATTTTATGGAAGACAATGCGTATGAAGAAGAGTTAGATGAAATACTAGTAGATAATTATAAAAACCATTCTCAAACTGAAAACAAACAGAAACTTGATATGGAAAACATTTATATCGAGGAATCTGATGATATATATTGTGAAGAAAACTCAGCAATGCATGAAATGCACGAAAAAGACGGCGTAAAAGTTGTTGGAAATGCAAATACTTCGGAAGAAGAAACTACAAATATAATAGCAATCCACTATGATGAAATGGAAGCTCGATTTGTTAATAcagatgatattgatactgaaGAAATTATTGTAATAGAGCAGGATGAAGTTTCAAATGATATCCCATTAGAAGAAGAATATTTAATAGAAGAAATAACTTTCTCTGAGGAATATGATAATGTTGATGTAAATGAGTATTTGGACAAGgttttattaactaaatttcAAGATTTACAATTAAATTGGGAAACGGAATGtaaaTTTTGTCTTGAAAAATACAATACCATTGAAGACTTATTAAAACATTCCTGTATAACTGAGTTTGAAGAGGAAAAACAGTTCTGCTGTATAATTAAAGATTGTGatgaaaatatgaataatttacCGACGCTGGCAAggcatttaataataaatcattATGATAAACTGGAAAGCGTGGCCATTTATGGCAAATGCCCAGACTGCCAGAagtcattttcaaatattatggatttaaataaacattcttGCTGTCGCAATATCAAACGAAAACCTGGGTCACCAAATTATTGTCAATATTGTGATATGGATTTCCAATCTTTAAAAAGATATGTTTTTCATATGCAATTTCATTTAACAAATCGTCGACCAAAGGTGTGCTTATTGTgtggtaatttatttaataattccaATGATTTCTTTGAGCACACTCAATATCAACATATACCTAAAACAGCAATGGCTTGTATAAATTGCGATCGTTTTTTCGTGAAAAAGGAAGTGTTTTACACCCACATGGAATTGCATGAGGATTCTAAATATCAATATAGTTGCACCCTTTGCCCTAAAAAGTACactaataaatttgttttaaatcaacACATGGATATTTATCACAATAACAAATCCAATGCTTTACAATGCAGTCATTGCGAGAAAGAATTTTTAAGCAAGTCATCGTATCGCAATCATATAAAATGTCATGCAAATGATGTTCAGGTGGAATCGTTTATATGTTCAACATGTGGCATTATAACTAATAATTCCGAATTTATTAAGTACCATATTGAATCAGATGAAGGTTCACATTGTTTTTCATCGCCCATAGAAGAGAAATCTCTAAGTTTGGGTTATACATGTGAAAATTGTTCTCTAGATTTTCATACaattaaacaacttaaaatacatCGTTTAAGTGAAAGTCATAGTGATGATTTATTCCATTGTGGTATATGTCGACAAAGCTTTAAAAGCCTGCGTCACATGCGAAACCACTCTGTTAATCACAAGGATTTCAAAGAATGGCAAGCGGCATTTCCAATAACACGTTATTTCGTCTGCAATATAGCTGATTGCCAAGAGTTTTATCCAATATGGACCTCATTATATTACCATAAAAAACGTCCACATAAAAGTGAAGAGAGCACGATTTCACCCAACAAGTTTAAATGCCAATTTTGCCAACAATTGTGCCTTTCAAAAATGTCTTTGGCTGTTCATGTGGCTAGAAGCCATAATAattCTAATATCAAATGCTCCCACTGCAAACGAGGTTTTAAATACCAGAAGCTTTTACAAGAGCATATTGATCGGTATCACACTCCAGTAGAATgtgaaatttgctttaaaaaatttaaacatagtCGCAACCTAGAATCACACAACAATATGGTGCATCTTAATATTAAgcgttttttttgtaaacattgcGAGAAAGgatatttttacaaaagtgaAAAGGATATACACgaaaagaaaGTCCATCCTGAAGTTgcttataaatgtgaaatatgcAACTTTACAACTAATTATCCGGAATCTTTGGAAATTCATATGGACAAGCATAATAATCAGTTAAAGTTTCAATGTACAATTTGTGGCAGAGAGTTTGGaagaaaacaacttttaaaagcCCATTTAAAAAGGcatgttaataaaaaagattattgttGTGACAAATATTTGAATGGAAACGGCTGCGACGAAAAATTTGTGTCTTACCATTTATTGAAAAGGCATATTCAAATTAAACATCCAAACTCAAGTTTTAGCATTAATATGCAAAGAgacgaacaaaataaaaaaccactCAACAAGCTTTCCGAATCTGATCAAATAGAAAATATCTCATATGAAATATTAGACTGTGACGATGGCAGTATGAGTGAAACGAGTCACCTAAATGATACAGAATTTGAACGAGATGCGATTGAATTGGTGTTGGAAGATGATGTGGAATTTGATGAGCagtaa
- Protein Sequence
- MAANVSTISSVCLYCKTNSATDAEKDFHEIYDEVGLELQLPTLVETFFHIKVKNDGKKYLCNDCVNHLIELYDLDEHAKEEGIEAPQLERLKNINDEADSIIKAEGISKERSGICLKEKICQLAGTPASHSTKEKSQVTQQNTNTIGYENLKIFPLTPETDIKRVNEQSGTEDKIDDLEYEDIETVEDLIDQDKTSTFTLTHLQVGDDIAENFPEEEFVTISENEEPQDLNESTSNSIIEATEVTNPSETEFSEHIELIEDDADVSMEVENMVDANTFKGNEERDFIKSRRINDYLFSEADNGTTVNNSNNQNDFMEDNAYEEELDEILVDNYKNHSQTENKQKLDMENIYIEESDDIYCEENSAMHEMHEKDGVKVVGNANTSEEETTNIIAIHYDEMEARFVNTDDIDTEEIIVIEQDEVSNDIPLEEEYLIEEITFSEEYDNVDVNEYLDKVLLTKFQDLQLNWETECKFCLEKYNTIEDLLKHSCITEFEEEKQFCCIIKDCDENMNNLPTLARHLIINHYDKLESVAIYGKCPDCQKSFSNIMDLNKHSCCRNIKRKPGSPNYCQYCDMDFQSLKRYVFHMQFHLTNRRPKVCLLCGNLFNNSNDFFEHTQYQHIPKTAMACINCDRFFVKKEVFYTHMELHEDSKYQYSCTLCPKKYTNKFVLNQHMDIYHNNKSNALQCSHCEKEFLSKSSYRNHIKCHANDVQVESFICSTCGIITNNSEFIKYHIESDEGSHCFSSPIEEKSLSLGYTCENCSLDFHTIKQLKIHRLSESHSDDLFHCGICRQSFKSLRHMRNHSVNHKDFKEWQAAFPITRYFVCNIADCQEFYPIWTSLYYHKKRPHKSEESTISPNKFKCQFCQQLCLSKMSLAVHVARSHNNSNIKCSHCKRGFKYQKLLQEHIDRYHTPVECEICFKKFKHSRNLESHNNMVHLNIKRFFCKHCEKGYFYKSEKDIHEKKVHPEVAYKCEICNFTTNYPESLEIHMDKHNNQLKFQCTICGREFGRKQLLKAHLKRHVNKKDYCCDKYLNGNGCDEKFVSYHLLKRHIQIKHPNSSFSINMQRDEQNKKPLNKLSESDQIENISYEILDCDDGSMSETSHLNDTEFERDAIELVLEDDVEFDEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -