Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101443.1:8369590-8377877[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.018 2 10.2 0.2 1 21 1037 1057 1037 1061 0.91

2 8 0.02 2.2 10.1 1.5 1 23 1629 1652 1629 1652 0.95

3 8 2.3e-05 0.0025 19.3 3.6 3 23 1676 1696 1675 1696 0.97

4 8 8.8e-05 0.0094 17.5 1.8 1 23 1702 1724 1702 1724 0.98

5 8 4e-06 0.00042 21.8 0.7 1 23 1730 1752 1730 1752 0.99

6 8 0.013 1.4 10.7 1.5 1 23 1758 1780 1758 1780 0.98

7 8 0.0036 0.39 12.4 0.0 3 23 1788 1808 1787 1808 0.96

8 8 0.0016 0.18 13.5 3.1 1 23 1814 1836 1814 1837 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.018	2	10.2	0.2	1	21	1037	1057	1037	1061	0.91
2	8	0.02	2.2	10.1	1.5	1	23	1629	1652	1629	1652	0.95
3	8	2.3e-05	0.0025	19.3	3.6	3	23	1676	1696	1675	1696	0.97
4	8	8.8e-05	0.0094	17.5	1.8	1	23	1702	1724	1702	1724	0.98
5	8	4e-06	0.00042	21.8	0.7	1	23	1730	1752	1730	1752	0.99
6	8	0.013	1.4	10.7	1.5	1	23	1758	1780	1758	1780	0.98
7	8	0.0036	0.39	12.4	0.0	3	23	1788	1808	1787	1808	0.96
8	8	0.0016	0.18	13.5	3.1	1	23	1814	1836	1814	1837	0.96

Sequence Information

Coding Sequence: ATGCCAGATCATTTGAAATGTGGCGAAGTTTTCACTTGGCTGTGTGATGGCGAATTATATGCTGTGGAATGCAAATTATGTGAAGATCAGCCTTTGTGTCCTCTATCAGAATATCCTCAACACATGGAAGTTTGGCACACCGACTGGCAGACATTTACACTAGAAGATCAGGTGGATGATGAGGAGGAAAATCCAAATGTTTTAGTTATTAATGATCGTGCTGTGTCATTCACTAGTGAAGACAGTGGTTCATTTAAGCCGAACGATCAGTTACAAAACGGTCGAGTGCTATGCCAAGAAGAACACGAAGAAATTTTAGAACCTTTTGAACAGGTACTAATAGAACAAGACATTAGCATACACACTCAACAAATTAACGAATACTCGTATGCTGACGAAGATGAAGAATATTTCAAAGATGCAAACGTACAGGTAGCGGAGGCCAAACAAagccaaaaacaaaacaaacacacacataataAACAATCACGGAATAGAAATCATACAttaaaatacacaataaaaGAGCAGAGAGCAACGACAAATGAAGCAGCAGAAAAACAAAGTGAAAGTCAAATGGAATTAAATGAACGAGAAATGAAACTAAATGGCGATGAAATggaacaaaatgaaaaaggatatgaaatagaaaaaaacgaaaatgaaacaaaactaaatgaaaataaaacgaaactaaATGACAATTCAACGAAATTAAGTGCAAATGAAACGGAACTATCCGAAAACGAAATTGAAATGAAACTAAATGATAATTCAACGGAATTAAGTGAAAATGTAAGAAAAGTATGCGAAAATAAGACGGTATCATTCGAAAACATAACGAAAGAAATAGAAGAGGAACTAACCGAAGAAGAAACGAAACCAATACAATATGATGAATATGTAATGAAACTAAGCGTAAGAGCAATGgaacaaaataacaatgaaacGGAATCGAACGAAACTGAAGCAGATCTAAGTGAAAACGAAATAGAAGCAATGGAAAATGAAACAAACCGGAGTGAAAACGAAATAGAACCAAAGAAAAGTGATAAATTAAGAAAATGCCGACAAAATCCCAACGATTACAAAGCAGGAACACACGAAACATCTccaaatgaaaatgaaacaatAATCTGTAAAAATTTCGAAGAGACACGAGAAGTTAACCCGCTTGaaagtttacaaaaatcttTAGAAGTCCGAAAAAAAGCTCAAATGTACCTGAGGAGAAGCAACAGAAGAAATTTAAAAGGCAATGAAACAGATGAAACAAATGGAAGTGAAAAGTTGCCAAATGTTGTTACCAACATTCTCTCagcaaatattaaagaaaaaaatgcaaatgaaacaaataatgcaaaatattttgaatgtttacaaaaatctttagaaataagaaaaaaagctgAGAAATACTTAAAGAGAAAGCAAAatctcaaaataaatttaaatgaaaatgaaaaattaagaaaagctACAACGAAACAATATGAAAGTGTAACTGAAGAAGTtgcaaatgaaaacaaagatgatgaacaaaatttacgaacaacaagaaaatctttaagacttttaagtaaaaatagtgAACATTCTCAAAATGGAaaacaagaaattaataaaaattacaaaagtaactCTAATAATGTAGAAGAAACTTCACATTCTGACAGTAGAAAGAGAACACTTGCCAAAAATTTTATCGAGCCGagagaaaagaaacaaaagggACTGGAAAAGCGGAAATCAAATGAAAGTGAAACAGATGATCAAACTGATCAAACATTGGAAGCGAaggagaaaattaaacaaacatttaaatataaagatttAATTGAAAGAAATGAGCACAAGAGAAAACACCGTAACTATGAAAGTAAAAGAGAAAATTCAGCTCCAAATCCCTCTCAGAGTTTCAAACAAACCCCTTCGAATCAAAGTCACCAAACAACCGAGTTGAGTTGGAAGGGAAAAATAGTTCAAAAGactttgaaaagaaataaatactcTTTAGAAAATACTTTTACTGCCGGCATGCGACTTAGAGGAGAAAGTAGCTGTGAAGATGCAGATTCAAGCAGCGAATTCGGTGGAAACTCTGATCTCGAAGAATCAAGTGAAATTGCTTTTACAGTTTCCAAGAGAAAAATAGTAAAACGTTTAAGCAAGCGGGAAGAAGATAATTTTAGAGATACAGATATCTATACAGATTCCACAGTACAAGCGAAAGAGAAATTTCCAAAAGATTTTGGCCCAAAAGAACATAAATGCTTGGAAAGCTTAAACTTAACACAGCAAGAGGACATGGAAAGAAGTAGCAAACAAATCTTGGTTACTCAATTGTCTGGCAGTGAAGATGACAAACAAGTGGAAACTGCTAAAAGTTCAGAAAATTTTGAGAAACATGAGGTGTACTCCCCTCGTTCTCCCCAAACGGAAGAAGAACATTTTGAATTCTATGAAGCGAAAGAAAGgctaaacaaacaacaaatcatCCATTTAATAAAACTCTATCATGAACATGCCCGCCTGTGGGATCAATCACATCCAGAATTCTGTGAACCTCAAGTATGCCGAAAATCCTGGCAACAGATCACCGAACAGTGGAATGAATTTTGCAAACGTAATTTTACCATAGCTGAGGTGCGCATACGCATTTGTACGCTCTGTCAACGATTTTTGCAAGAAAGAGATCGTTTGGCTTTAGAGGGAGAAGTGGATGAGTGTGTCAAATTTCCTTACTACGAGCAAATGCAATTTCTCGAGCAACAGAAGTCCTTGCAAAAGAGACGCGAACTGTATGAGCAGCAGAATGAGAAAATATTGGAAATTTATCAGCATTTTCCGGTATTGTGGCACATCAGCTGCTATAAGCTGCGGAAGGCCAAGGAAAGAGCAAAAGCAATTGCGAACATAAGCAAAGCTTTGAAGCTCTTTGGCTTAAATTTGTCTTCAATTTTGGTACAAAAGCGGCTTCGCTCTCTTCGGAAATGTTATCGTTTGGAGAAAATACGCCATTTGCATGCTCAAGTGGAGCAAACGCCCTTTGAACCCATGTTTCGGCATTATGAGAGAATGCATTTTCTCGATAAACATATTGATCCATTTGCTTGTGGTGTTTgtggaaaaatttttgaaaattttcaaggtTTTCGCCAGCATTTGGAGGCTGAATTTCATGGCAGTGTGGTGCCAGAAGAAAGTGATAAAGCGACAGGAGAATCATCGAGTGTTAAAATTCCAAGAGCAACAAGGGACGAGTTGGATGTTAATGAAGAAACTTGTCTGGCTAATACTACACAAGTGAATGaacttaatgaaattgaaattgaggGTGAAAAGATTGTGGTGTTTTCACCAATCCCTAATCAAATCGAAAGTTTCTCGGAATCAGAAAATTCTAGAGATATTTTACAACGATTCAGTCCATTTTCGTCGgcacaaaattcttttatagACCTGGCAACCGATGCGCAGCCAAAAGCCTTAGAAAATTCTTCTTCTATAAATCCACAAGTCTTAAACTTTCCCTTGAATACCCCTAATGAATCAATTATTAATTCTTTGCATTTGGAAGATCAACTTATTGAGGAGATTATGGAAAATGTTAACAACAGCGATAGTTTAAGCCAACAGGGACTGGATCagTTCATTAAAACTGTAACCAGCCGCTGTGAGGAGAGTCAGACCTTCGAACTGTCTGCCAATAATTGTGTAACAGAGGAAATTTTAAgtccaaatatttttcatacagaaaATTCTTTTGTTGTCGAACATCCGGATATAGTAACCGATCAAAGTTCCCATATTTTGAGTCTATCGCCAATTGCGGAAAGTCTTACTCCGCTCCATTTGTACACAGAAAATTCATTCATTATAGAACATCCTGATATCGTGACACAGCAAACAGATGTGGAATCTTTTGTTCCAGACCTTCGGCATACAAAAGCCTCTGCTGTTGTGGAGCATCCTGATATAGCAACAGATGCTGTTTTAGAAAAAGATATAGATCACCCTTTGAATGCATTTCCAAATGTTAAAGGGACGAGTCCAGTTAAGGaattagaaaatcaaattaCAGAACCAGGCGATACGGAAAatCTCTCCCCAGCTGCTCCGCTCGTAGTGAAAGTTCAATGTCCTGCCTTTTCTGTCGATCTCCAGTTAATGCCTGAGTCCACGGAGACCCTCAATGATTCCGACAATGAAATGTTTTCCTCAGCCGACATTTCCACCATACCCTTGCCCGATCATTTAATACACAAAATGATCGAAACTTATCGTAAATTCCCGCAGCTTTGGAATCCCAATCATTTGGATTTTAATTCACGCACTTTAAGACGTCAAGCTTGGTGTGCACTTACAACGGAATTCAACTCTGCCGTGGGACAACAAATATCCTGGCGTACTTTGCATCGCAAATTAACCGATTATGCCAAGtactttaagaaattaataatggAGCAAGAAGACTATGAACAAGTGGAAAATAAATGGGCTTTCTATGAGGACTTTAAGTTTATGCATGACGTGATTGCAGTAAATAATGAATTACAACGCAATGTTCATCAACgtgataataattttcaaattatagcCATTTATAAGACTTTTCCCCAGCTCTGGGATACTAAGCATTCCGATTATAATAAACGTGGCACTAAACAGCGTAATATTGAAATTATGTGCAATAAATTGCAGGAGGAAAACAATTTACAAATGACCACAGAACGCCTGAAATATCGTCTTATTGAGCTGAGAATGCAATATAGAACTGCCAAAAAACAACGTCTTAAATGCCTTAAAGATCAACAAGAATTTTCTTCTaacgattttgaattttatgaagCGCTAAACTTTCTGGATGATCACATAGATCCCTTTATCTGTGTTAAGTGCAAAATGGAATTTAAAAATCGTACGGACTACAATCTACATCTTACGAAAGAACATACACAAAAGAGTGGCACAAGAAATCGCTCTTCAACTATTCTACCACATGAACCGGGGGCGGAGAATATTTGCCACATTTGCGGCATTAAATTTACCACACGCAGTAATTTGGTGCATCATGTGAAACGTCACGAGGGCATACGAAATTATGCCTGCACCATGTGTCCGAAAAAGTTTTATGCCTCGCATTCTTTAAAAGTGCATATAAGATCTCATACGAAGGAATGTCCTTATACGTGCGAAAAATGTGGCATGTCTTTTGTTAGTGCCAGCAAATTGAATCAACATGTAAAGCGGCACttgaataaaaaagattttcaatGTGATTTTTGCCCGAAGGCATTTTTTACGGCCTTTGAAAAGGATCGTCATGAGAGGCGTCATTTGAATATTCGCGACAAGGCGTGTCCCATTTGTGGCAAAACTTTTGTGGCCGGTTCATCGTACTACGCGCATTTGATGTTGCACAATGATAAGAAACGTTTTGAATGTGATAAATGTGATATGAAATTTGCCCAATACGCTGGcttgtataaacacaaaaagagGCATCATGATTAA
Protein Sequence: MPDHLKCGEVFTWLCDGELYAVECKLCEDQPLCPLSEYPQHMEVWHTDWQTFTLEDQVDDEEENPNVLVINDRAVSFTSEDSGSFKPNDQLQNGRVLCQEEHEEILEPFEQVLIEQDISIHTQQINEYSYADEDEEYFKDANVQVAEAKQSQKQNKHTHNKQSRNRNHTLKYTIKEQRATTNEAAEKQSESQMELNEREMKLNGDEMEQNEKGYEIEKNENETKLNENKTKLNDNSTKLSANETELSENEIEMKLNDNSTELSENVRKVCENKTVSFENITKEIEEELTEEETKPIQYDEYVMKLSVRAMEQNNNETESNETEADLSENEIEAMENETNRSENEIEPKKSDKLRKCRQNPNDYKAGTHETSPNENETIICKNFEETREVNPLESLQKSLEVRKKAQMYLRRSNRRNLKGNETDETNGSEKLPNVVTNILSANIKEKNANETNNAKYFECLQKSLEIRKKAEKYLKRKQNLKINLNENEKLRKATTKQYESVTEEVANENKDDEQNLRTTRKSLRLLSKNSEHSQNGKQEINKNYKSNSNNVEETSHSDSRKRTLAKNFIEPREKKQKGLEKRKSNESETDDQTDQTLEAKEKIKQTFKYKDLIERNEHKRKHRNYESKRENSAPNPSQSFKQTPSNQSHQTTELSWKGKIVQKTLKRNKYSLENTFTAGMRLRGESSCEDADSSSEFGGNSDLEESSEIAFTVSKRKIVKRLSKREEDNFRDTDIYTDSTVQAKEKFPKDFGPKEHKCLESLNLTQQEDMERSSKQILVTQLSGSEDDKQVETAKSSENFEKHEVYSPRSPQTEEEHFEFYEAKERLNKQQIIHLIKLYHEHARLWDQSHPEFCEPQVCRKSWQQITEQWNEFCKRNFTIAEVRIRICTLCQRFLQERDRLALEGEVDECVKFPYYEQMQFLEQQKSLQKRRELYEQQNEKILEIYQHFPVLWHISCYKLRKAKERAKAIANISKALKLFGLNLSSILVQKRLRSLRKCYRLEKIRHLHAQVEQTPFEPMFRHYERMHFLDKHIDPFACGVCGKIFENFQGFRQHLEAEFHGSVVPEESDKATGESSSVKIPRATRDELDVNEETCLANTTQVNELNEIEIEGEKIVVFSPIPNQIESFSESENSRDILQRFSPFSSAQNSFIDLATDAQPKALENSSSINPQVLNFPLNTPNESIINSLHLEDQLIEEIMENVNNSDSLSQQGLDQFIKTVTSRCEESQTFELSANNCVTEEILSPNIFHTENSFVVEHPDIVTDQSSHILSLSPIAESLTPLHLYTENSFIIEHPDIVTQQTDVESFVPDLRHTKASAVVEHPDIATDAVLEKDIDHPLNAFPNVKGTSPVKELENQITEPGDTENLSPAAPLVVKVQCPAFSVDLQLMPESTETLNDSDNEMFSSADISTIPLPDHLIHKMIETYRKFPQLWNPNHLDFNSRTLRRQAWCALTTEFNSAVGQQISWRTLHRKLTDYAKYFKKLIMEQEDYEQVENKWAFYEDFKFMHDVIAVNNELQRNVHQRDNNFQIIAIYKTFPQLWDTKHSDYNKRGTKQRNIEIMCNKLQEENNLQMTTERLKYRLIELRMQYRTAKKQRLKCLKDQQEFSSNDFEFYEALNFLDDHIDPFICVKCKMEFKNRTDYNLHLTKEHTQKSGTRNRSSTILPHEPGAENICHICGIKFTTRSNLVHHVKRHEGIRNYACTMCPKKFYASHSLKVHIRSHTKECPYTCEKCGMSFVSASKLNQHVKRHLNKKDFQCDFCPKAFFTAFEKDRHERRHLNIRDKACPICGKTFVAGSSYYAHLMLHNDKKRFECDKCDMKFAQYAGLYKHKKRHHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -