Gvir017238.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101442.1:7426753-7432108[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0035 0.37 12.5 0.7 1 23 351 374 351 374 0.95 2 12 4.7e-06 0.0005 21.5 0.9 1 23 379 402 379 402 0.97 3 12 2.7e-05 0.0029 19.1 4.5 1 23 407 429 407 429 0.97 4 12 0.076 8 8.3 5.2 2 23 436 457 435 457 0.95 5 12 0.0017 0.18 13.5 2.8 2 23 465 487 465 487 0.95 6 12 0.017 1.8 10.4 1.2 1 23 493 516 493 516 0.95 7 12 0.0019 0.21 13.3 0.6 2 23 527 549 526 549 0.94 8 12 2.8e-07 3e-05 25.4 0.7 1 23 577 599 577 599 0.98 9 12 7.4e-06 0.00079 20.9 2.3 1 23 606 628 606 628 0.96 10 12 0.00025 0.027 16.1 0.2 3 23 636 656 635 656 0.97 11 12 0.089 9.5 8.1 2.6 1 23 663 685 663 685 0.97 12 12 0.00034 0.036 15.7 3.3 1 23 691 714 691 714 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTTGTCGTACTTGCGCCAAATGTGATTTTGATAATGAAAGCCAAtggtttgatttatttaatgctCCTCGTTGGCAACCTGAAACGCAACGCATACATTTGGAGTTAAATACTTGGAAAATaaagATAACGTGCAACGATGGGTTGCCGCAAAAAATTTGCACCGAttgtttctcaaaattttgCACCGTCTCCTCATTTCGTTTGCAATGTTTGGAGGCACAAACAATTTTAAGCAATATATTCGATAAAATCGATACACAAAGTATACAAGAAGAAGAAGTTTTCGAGGGGTTCGCTAATGAACAGGATAATGATGGACAAAATACCGTAATAACAACTGTAACAAGCTCAGTGGCAGCAGCCAACGCAGCAGAAAATGCAATACATTTAAAGTCAATTGAGCACACATTTGAGACAACAACAGAAAAGAGCACAAATAGCAGTAATAGTAGCAAAActtacaacaacagcaacaacattaaCAATAATGAAAGTATAACAAGTTTTAGtgaaatcttaaatttaaatcgtAAAAATAACACCGAGGTTTCATTTAGAAACAACACGAAATTATTAGACACTGCCAGTTTAAGAAACGAATATAAAAACCATAATTTTAATCACATCTTTGGAGAAGTAGAAGATATTAATAACAACACTGATGGTGATGAAGATGCCTCCACCAGCAATATAGCTGATTCAAGCAATAACAATAATGAAACAACACTATTATTACAAGATACCACCAACGATTTAGATGAAAATGATATTATAGAAGAACTAATCGAAGAACTAGACATCGTTGAGGAAATCGCCGAGGAAGAAGACGAGATTGAATGTTGCAATGAAGACAACCTAACAAATAGAAATATTATATTGTCGCACGCATCTGACTACGAAAATGACAATTTAGCAGATAATCTAAAAATTACATTCGAATGTAAATACTGTTATAAATGGAAGAATAGCGCATCGGAAAATTTTCTTACCCAACAAGAACTGTTGGCTCATATCACCAAACTGCACAGCTCGGAGCACCCATATAACTGTCCTTATTGCAAGCAAAAATTTATGGATGCCGCTTCAAGAACTACCCATTTAAAGGAAGAACACAGTCAAAAGGTGTATGAGTGTGGCACATGTGGTAAAAAATATGccgataaatttaatttaaaaaatcatatcgaAAAGTACCACAGTGGTACCGATTTCGATTGTACGCTGTGTGATAAGAGTTTTTGTTCGAGAAAAAGTTTGAACTATCACATGAAATGGCACAATCCTAAAGAACAATTGAAATGTAGCTACTGTGATCGTTTGTTTATCAATCAAAGACATTTGAAGTGTCATGAGGAGACTCACACGGGCTTTCGTAGTCAGGAGGTCTGTTCCTTTTGTGggaaaaATTTCTTCCATTTGAAAACGCTTAGATGGCATATTTACCGCCAACATGGTGGAGAGAAACCATATAAATGTGCCAGATGTACAGAAGtcTTCACgtcatattttgaaaaacgtaTACACATGCTCGAATATCATTTAGATAATCTAACGCTGATCGAAAAAACCGAATGCATGCTGTGTCACAAACGTTACGACAATGAAGGAGAACTTAAAGATCATATGTTGGAAGATCACAAGGAAAATAAAGGAGCCGTTAAAATAGCCAACAACAAAAGAGTAATTATGAATAAGAAACCAAAAAGCTTTACAGGAATATTTCAATGTGAAAAATGTGATAAAAGATTTAATATGAAATCGGCGTTAGAAAGACACATGGCTGTACATTCCACAGAGGGAAGACCGCATGCTTGCCCTCAATGTCCCAAGCGTTTTAAACGTTCACAAGATATGAAATGGCATTTGAAAACGCATTCCGCGGAGAAGCCAAATATCTGTGATGTCTGTGGGAAAggatttgctttaaaatatgtGTTAACTCAGCATCGCAGAAGCCATGAAGttttagaaaAGAACTTCACCTGCTCCACCTGTGGTCGTTCATATCTTTTCGAAAAGTCTTTGCACTTGCACGAGCGCATACACAGCGGTAAAACCTATTACAAATGTGATTTATGCAGTGAAAGTTTTGTTacccacataaaattcaaatggcatatgaaaaaaatgcacGACGAAGAAGAAGTGGCTGCCACTAATTTAAatcctaataaaaataaatctaacaTGGAGCTGCCATTGGACGATTTGGTCAACATTGTGATtacttaa
- Protein Sequence
- METCRTCAKCDFDNESQWFDLFNAPRWQPETQRIHLELNTWKIKITCNDGLPQKICTDCFSKFCTVSSFRLQCLEAQTILSNIFDKIDTQSIQEEEVFEGFANEQDNDGQNTVITTVTSSVAAANAAENAIHLKSIEHTFETTTEKSTNSSNSSKTYNNSNNINNNESITSFSEILNLNRKNNTEVSFRNNTKLLDTASLRNEYKNHNFNHIFGEVEDINNNTDGDEDASTSNIADSSNNNNETTLLLQDTTNDLDENDIIEELIEELDIVEEIAEEEDEIECCNEDNLTNRNIILSHASDYENDNLADNLKITFECKYCYKWKNSASENFLTQQELLAHITKLHSSEHPYNCPYCKQKFMDAASRTTHLKEEHSQKVYECGTCGKKYADKFNLKNHIEKYHSGTDFDCTLCDKSFCSRKSLNYHMKWHNPKEQLKCSYCDRLFINQRHLKCHEETHTGFRSQEVCSFCGKNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFEKRIHMLEYHLDNLTLIEKTECMLCHKRYDNEGELKDHMLEDHKENKGAVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACPQCPKRFKRSQDMKWHLKTHSAEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCSTCGRSYLFEKSLHLHERIHSGKTYYKCDLCSESFVTHIKFKWHMKKMHDEEEVAATNLNPNKNKSNMELPLDDLVNIVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045511;
- 90% Identity
- -
- 80% Identity
- -