Gvir025039.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- Zbtb3
- Assembly
- GCA_956483585.1
- Location
- OY101443.1:12582773-12584465[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 0.013 17.0 5.4 1 23 175 197 175 197 0.95 2 10 0.0081 0.86 11.3 0.7 1 23 203 225 203 225 0.97 3 10 8.6e-05 0.0092 17.6 2.4 1 23 242 264 242 264 0.98 4 10 0.0096 1 11.1 0.8 1 23 273 296 273 296 0.92 5 10 3.6e-06 0.00038 21.9 0.6 1 23 302 324 302 324 0.99 6 10 0.042 4.5 9.1 0.1 3 23 332 352 330 352 0.92 7 10 0.00015 0.016 16.8 1.5 3 23 360 380 359 380 0.99 8 10 0.012 1.3 10.8 6.0 1 23 385 407 385 407 0.99 9 10 9.8e-07 0.0001 23.7 3.0 1 23 413 435 413 435 0.97 10 10 2.3e-05 0.0024 19.4 1.4 1 23 441 463 441 463 0.98
Sequence Information
- Coding Sequence
- atgtccaGTGGCTTAATGTCCAAATGCCGCACTTGCCTAAGTGATTCAAGTAATTATCATCAACTACTCGATTATGtggaagaaaattataaaatcattgAAATGTTAGACGGTATGGTACCCCAAATTGATATTAAGTCAACAGCGAAGTTTTCCACTTTAATATGCAAAAGTTGTGTGGATAAGTTGCTAAGTGGCTATAAATTTCAACAGTTGTGTATAGAAACTAACAATCAGCTACATGGTCTGTTCGGAAATAGATTCTTTGAGATGGAGGCGGAGAAGATATTAAACCCCTGGACTGGTAGGTTGAGTCTTAAGTCGGAGGATATTGAAGAAGATGGTTGTACTAAAATGCGGTCTAGTCATGATAATGATTGGATTGGAGATGGTGGCACTGGGAGCGATACAGACTCAAGTGATGAGCCAGAAATGGAGCAGCAGTTAACCGAACGTGTATCAGAAAACAGTTTGCCTGATACCAGCATGAGGGAAGTGGaaaaGCCCAACCATAAGGGAAAGCATTCCTGTGCGGAGTGCGGTAAAACCTTTAATGGCCATTCCCACTTAAAACGACATAGCTCGGTACATTCTCCTACAAGACCATATGAATGTGAAATTTGTAAATATCGCTTTGGCAGACTCAATATCCTAAAGCTGCATTTGTCTCGACATAGAAAAGAATCAGGAGAAGATTTTAATTCTAAATCACGTCCCGCATTCTTTAAATGTCCTTTCTGTCCTAGACGTTTTCAAAAGCAAGAGTCACTCTCTGCCCATCTTCATATGCACAAGCACAATTCTTCGGCAGCCAATTATCTCTGTAGAGTATGTCAACGCAGTTTTATGTCAGTAAAAACCTTAACCGAACACATCACTAACCAACATGCGGAAgttgataaatataaatgtGATCAGTGcgataaaacttttgttttaaatgcccAATTAATGGAACATTTAAATCGTCATAAAGGTAGCAAAAAGCTGGTTTGTATAGTATGTGAGACAGAGTTTATTGGATATAACAATATGAAAGAACATATGCGCATGCATAGAAATGAAAGTAGTCAGCTGTGTCCGCAGTGTGGCATAGAACTTTGCAACATAAGTAGTTTACGTCGGCACATGAAAAaacatgctttaaaaaaataccagtGCCCAAAGTGTTCCAGCCGTTACAATTTTAGAGAGCATATGTtcgcacacatgcacacacataaTCTTGAAAAAACTCATCCATGTCTTCAATGTGGCAGAAGATTCAGTAATGCGACCAGTTTACGTCGACATATGAAAAAACACACGGGCTTAGAAATGTATCCGTGTACAGAGTGCTCTAGCAGCTTCGCTCATAGCTCAGagttaaaaaaacatgcatCAACGCATTAA
- Protein Sequence
- MSSGLMSKCRTCLSDSSNYHQLLDYVEENYKIIEMLDGMVPQIDIKSTAKFSTLICKSCVDKLLSGYKFQQLCIETNNQLHGLFGNRFFEMEAEKILNPWTGRLSLKSEDIEEDGCTKMRSSHDNDWIGDGGTGSDTDSSDEPEMEQQLTERVSENSLPDTSMREVEKPNHKGKHSCAECGKTFNGHSHLKRHSSVHSPTRPYECEICKYRFGRLNILKLHLSRHRKESGEDFNSKSRPAFFKCPFCPRRFQKQESLSAHLHMHKHNSSAANYLCRVCQRSFMSVKTLTEHITNQHAEVDKYKCDQCDKTFVLNAQLMEHLNRHKGSKKLVCIVCETEFIGYNNMKEHMRMHRNESSQLCPQCGIELCNISSLRRHMKKHALKKYQCPKCSSRYNFREHMFAHMHTHNLEKTHPCLQCGRRFSNATSLRRHMKKHTGLEMYPCTECSSSFAHSSELKKHASTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -