Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101442.1:22506577-22509270[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-06 0.00014 23.3 0.7 2 23 259 281 258 281 0.97

2 8 0.00071 0.075 14.7 4.5 2 23 289 311 288 311 0.97

3 8 1.6e-05 0.0017 19.9 1.6 1 23 332 354 332 355 0.95

4 8 6.6e-05 0.007 17.9 0.7 1 23 375 397 375 397 0.95

5 8 4e-05 0.0043 18.6 0.8 1 23 403 425 403 425 0.99

6 8 4.3e-07 4.6e-05 24.8 3.0 1 23 431 453 431 453 0.99

7 8 7.9e-07 8.4e-05 24.0 2.5 1 23 459 481 459 481 0.99

8 8 0.0017 0.18 13.5 3.6 1 22 487 508 487 511 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-06	0.00014	23.3	0.7	2	23	259	281	258	281	0.97
2	8	0.00071	0.075	14.7	4.5	2	23	289	311	288	311	0.97
3	8	1.6e-05	0.0017	19.9	1.6	1	23	332	354	332	355	0.95
4	8	6.6e-05	0.007	17.9	0.7	1	23	375	397	375	397	0.95
5	8	4e-05	0.0043	18.6	0.8	1	23	403	425	403	425	0.99
6	8	4.3e-07	4.6e-05	24.8	3.0	1	23	431	453	431	453	0.99
7	8	7.9e-07	8.4e-05	24.0	2.5	1	23	459	481	459	481	0.99
8	8	0.0017	0.18	13.5	3.6	1	22	487	508	487	511	0.91

Sequence Information

Coding Sequence: atgaaccAGGTAAACAAATGTCGAACCTGTTTTAATGAATCGAGTAAAGGGATGCAATCTCTAACAAAGACAATTACGGATGATGGTAACCAGCAGAAAACCTTTGCTGAACTCCTTAATCAGGTGGCTAACGTTAAtATACATAATGATAAATGCTCAAAAATGCCAAAAGCCATTTGCAGTGGCTGCTCAAGAAAACTCAAAGCGGCCCATGCATTCGTTCAAACAGCACAGGAAGtcaatgaaaaacttttatcaATGTTTGGACTACAACCCGATGATGTTTGTAAACCATTGGACTGCCTACAGGAGGTTCAGATTGATATAGATCCTCAGATAAAAATGGAACGGGACAATGTTTATGATCACAGCCGGGATGGAGATGTGTCGGGTGGGACCGAGTTCCTAAAGAgggatataaaatttaaaaaggaagaTCCGGAAGAAGATACTTTAGCTACAACTGATGAAAATCTTGAAGAAGCcAAATACCTCAAAGATTTCTTAGATATAACGTGCCCCGATATTTCCATTACAACCGAAATTTCGGATAATAAGGACTCTATTCCGAATAGTTTTCAACAAAACATGGATACATACAGCAGCAATAAATCATCATGTGATTCGGCATCAGATGAAGATGAGTGGCAGAATAATTCGAGAATAAAGAtggtaaaaaagaaaacaaaatctacaaaaaagcttaataagTCACCTAAAGGCATAGAAGgtgttgaaaagaaaaacaacaatgaaGACGATTGGTTGCAAGTGAAATGTAATGATTGTGATAAAATATTTGCCAATTCACGACTATTAAATCAACACCTGCGTCGAAATCATGTGCCAGATGAACTCAAAATACAATGTCTACATTGTGAAGCAAAATTTAGTCGACGGCATAATATGTATTCCCATATGCGTCGTATAcataaaatagaaaacttaGAATCGCTTCAaatacaacagaaaaaaataaatgtcgaAAAGCAGTTTCCTTGTCAGCAATGCCCACGttcatatacaaataaatataaattaattgcaCATGTTAATAGCCACCACAATCCAGAAACCAAAAACAGCTCTCCTAAAGAGAAGATTTTGCAGCCGAAGAAACGTTTTCTGTGTACGCTTTGTGGCTTAAAGTTCGATAGTACaggaaatttaaatatacactATAGGCGTCATACTGGGGAGAAACCTTTCAAGTGTGAGTTTTGTGATCGGGCCTATCCAAGGTTATACGATGTGACAGTACATCGTCGCACACATACTGGCGAAAAGCCCTACCAATGTACTCTCTGCGAAAAGACTTtcagaaaatcaaacaaattaacAGTTCACATGCGTACACATACCAACGAACGTCCCTACAAGTGTACACAATGTGAAAAGgcatttaaacaatcaaaagaTTTGAATATACACAAACGTACACATACTGGTGAGAGACCCTATAAATGCGGTGTGTGCCACAGTACATTTACGCAGAGTAATTCGTTGCGATTACATCAATTCAAACAACAGCATATGGAAAAACCAAATGTTGTGGATAATTTACCGGAAGGAACGACATCAAACTTCATTTCAGCCAACATAAGTTAA
Protein Sequence: MNQVNKCRTCFNESSKGMQSLTKTITDDGNQQKTFAELLNQVANVNIHNDKCSKMPKAICSGCSRKLKAAHAFVQTAQEVNEKLLSMFGLQPDDVCKPLDCLQEVQIDIDPQIKMERDNVYDHSRDGDVSGGTEFLKRDIKFKKEDPEEDTLATTDENLEEAKYLKDFLDITCPDISITTEISDNKDSIPNSFQQNMDTYSSNKSSCDSASDEDEWQNNSRIKMVKKKTKSTKKLNKSPKGIEGVEKKNNNEDDWLQVKCNDCDKIFANSRLLNQHLRRNHVPDELKIQCLHCEAKFSRRHNMYSHMRRIHKIENLESLQIQQKKINVEKQFPCQQCPRSYTNKYKLIAHVNSHHNPETKNSSPKEKILQPKKRFLCTLCGLKFDSTGNLNIHYRRHTGEKPFKCEFCDRAYPRLYDVTVHRRTHTGEKPYQCTLCEKTFRKSNKLTVHMRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCGVCHSTFTQSNSLRLHQFKQQHMEKPNVVDNLPEGTTSNFISANIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00900867;
90% Identity: iTF_00760351;
80% Identity: -