Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101440.1:91038344-91055241[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.06 6.4 8.6 0.7 1 23 1702 1725 1702 1725 0.94

2 12 2.2 2.4e+02 3.7 1.0 1 23 1888 1910 1888 1910 0.93

3 12 0.00085 0.09 14.4 2.8 2 23 1913 1934 1913 1934 0.97

4 12 4.1e-05 0.0044 18.6 0.2 3 23 1942 1962 1940 1962 0.98

5 12 8.3e-06 0.00088 20.7 5.8 2 23 1969 1990 1968 1990 0.97

6 12 9.5 1e+03 1.7 0.1 5 23 2003 2021 2002 2021 0.96

7 12 0.041 4.3 9.1 0.1 2 23 2060 2080 2059 2080 0.96

8 12 0.00029 0.031 15.9 0.4 1 19 2086 2104 2086 2108 0.95

9 12 5.7e-06 0.0006 21.3 1.8 1 23 2116 2138 2116 2138 0.99

10 12 0.0002 0.021 16.4 6.5 1 23 2144 2166 2144 2167 0.96

11 12 0.0012 0.13 14.0 6.4 1 23 2172 2194 2172 2194 0.99

12 12 0.0032 0.34 12.6 5.8 1 23 2200 2222 2200 2223 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.06	6.4	8.6	0.7	1	23	1702	1725	1702	1725	0.94
2	12	2.2	2.4e+02	3.7	1.0	1	23	1888	1910	1888	1910	0.93
3	12	0.00085	0.09	14.4	2.8	2	23	1913	1934	1913	1934	0.97
4	12	4.1e-05	0.0044	18.6	0.2	3	23	1942	1962	1940	1962	0.98
5	12	8.3e-06	0.00088	20.7	5.8	2	23	1969	1990	1968	1990	0.97
6	12	9.5	1e+03	1.7	0.1	5	23	2003	2021	2002	2021	0.96
7	12	0.041	4.3	9.1	0.1	2	23	2060	2080	2059	2080	0.96
8	12	0.00029	0.031	15.9	0.4	1	19	2086	2104	2086	2108	0.95
9	12	5.7e-06	0.0006	21.3	1.8	1	23	2116	2138	2116	2138	0.99
10	12	0.0002	0.021	16.4	6.5	1	23	2144	2166	2144	2167	0.96
11	12	0.0012	0.13	14.0	6.4	1	23	2172	2194	2172	2194	0.99
12	12	0.0032	0.34	12.6	5.8	1	23	2200	2222	2200	2223	0.96

Sequence Information

Coding Sequence: atgacgGAAAATGTTCAGTGCCCCGTATGTACTTTATACCTGCATGCAGGTATGAATCTTTCAGATCATTTAGAGACACATCCGAAAGAACAAGTAATTCGCGCTCTAGTACAAATGACTATATCTGGAACAGGAGCTGGAAATAGTAATAGCAATACATTAGCATCAGCTTTAGCTGGAGAAAGTAGAAAAGGCAACGCTACCAAAAAGCAATCGTCTGATTTGGAGGAGAAGTCTTTGTCAAGTATCAATGATAATGAGTTTGATATTGGTACTGCAGGCAATAGTAGTAGTGCCATTTTAAGCAATTCCGCCAGCAACTGTTCGTTGTCAAACCAAAGTGTTTGCAGTAGTCAAACTGCAAACAGCGTTTTAAGTATTTCCGATAAAAAAGAACGACATAATGAAAATGAACaggagaacaaaaatttaacatctcCATCCATTGTTTCGGTCAGTAAAGTGGTAAAGACGGAAACGACCAATAAAGTTGCAATGACAAAAAACATTGTGGCtggaaatgaaaatattgaccAATGCTTTTCAAAGCTAAATTTCAATCCAACAAATTTAATCTCAAACTCAACAGCAAATGCAAGTCATTCATATCAAAGGAGTGCGATTGAATTgacaaatacaacaaataatattcataataataattttaacgttTTTGGCGGTAATACTCGCTATGATCAACAACAACGTAATGTTGTTAACAATCAAAATACGCTATCTACTCTACCACATATGCCACCACCGCCACCTCCAGCATCACCACAGAGTCAACATCCTGGTCAACATCACGAAATTGTAGGGCGTGGAAATATACCAACCGGATCTAGTGGTACATTTCATTCGATGCATCCACAACAGTTTTCACTACCACCCCAACCGCATATTACTTCTCCGCATTTGGGAAATACATCTAGTGGTTCCCGTCAGACTCATATGTATACATCAGGCCAACATCAACAGCCGCCAACAAATTCTCATCATGCACAAAGTTTAAAGGTTATATATACACCTAACTTGCCACCACCTCCTCCGCTGCAGcTCTTTACTTATCAAGCACAAACACATTTGCAACAGCATCAGAAACCCCCACCGGCCTATGGCACTGCAATTAGTCAAATTCGATCTCAGCATAATCAAAGTAAGCATCAAGTTACAGGCTCATTGGCAACGCAACACCAACATCAAACATTACTAGCACATTCAGTtgtacaacagcaacaacagatgcaacaacaacatcatttGCAGCAACATCACACGTTGCAACATAATTTAAGAATACAAGTACCACCGGCGCCATCTCCACCTCCAATTCCAACAAAACATACATATTCGGCAAAAAACAATGATTTGGCAAATCATTCAACAACTTCTAAGCATAGTCAATCGCAACTACATCAGCAACAATCTAAAGCAGATTTATCGCAACGACAACAGCACCAACAGCAACAGGAACAGCAACAACCGCAACATAACTCGGAAAGTGTACAGGATTCAAACAATCACATTTTCAATTcacatgaaattttaaataaatcttcattAAAGGAAGCATCTTCACCGAATTCGCAAAATTCAAATGCGATTGTACCTTCATATCCGCAAGTCTCAATTAGTCCTTCTGCTGCTTCGGCTTCAATGGCATCTGTAGCAGCATCAACATTGGGAAGACACACTAACTCACCATTTGCCGCATTATTAGCAGCGGCTGCCGGTGCTCCATCTCCTTCAAATACATCGTCAGTTTTAAGGTACGCAGAGTCGCCAGTGGCTCATTATTTAGAAAGGGAAAATGGCGATTTTATTGTACAGGAAACTCCGAAACATATTGTAGAGTGTGTTGAAACAGACACTGGAGAATTTTCTGTTATTGAACGTATATATCAATCACCACCCAGTGTTTTACACATtcatgacgatgatgatgacgaaGACGATGATGACGATAAATGCAAAGAGCAGATCGAAGATGAAAAGCGTGACCATGTTGACAGTGATCCCAATCAGCATGACGTTAATGTAggtgaaaatgaaaaaagtaaagaTGAATTTGATGACAcgcaaagaaaaacttcatcGGAGAACGTTAAAACGAAAAAGACCAAAAGGAAAACTAATACTGAAGGTCAAAATTCAGTTGATAATGAGATTGTTGATTTTGTAAGCATTTCTAGTGACAGCGGCGACGAAGaagaatttatatcacaagaaaaaaatgatCGTAAAAATACCACCGAAAAGAATAACATAAATCTATCATCCTCCACTTGCAACTCTTCAATGTCAACAATGCCTTCGCAGTCCTCATCGCCAACTTCAGCTGTGTCACCTACATTACCAACAACAGGTGACGATCAGTCAATTTCTATAACACCCACTTCATTACATacttcttcctcttcttcagcCACatcaaatacaaattctatACAACAAAATTCCGGAGTCTCCATTAATAGCAACACCACTAGTCGAAAAAAATCATCTAAAAACACAATTACAGTTTTAAGCGATGttcaattgaatttaaacgAATATTTGGATTTGGTCGGAAATATAATTGCTTCGAGTAAAGTAGCAGCACAGCGTAAAACATTAGCATCCATTGCTCCCATCCCTCtagtaaaaatagaaaaagaagaaCCGATGGATGAAGATATAGCAACTGACACAACAACATCGGCAGCAACAGAAATATCAACAGATTTCGAAACAGCACCACCTTTAAAGGCCAACAAACATGAGACTGAAGAAATAACTGATATCCCTAACAGTAGTTAtagtaaaaaaacaagaaataatcaTAACATAATATTGACAAGTGACCTAGAACAGGATGAACAGGACGAGAAAAAACCACAAGTCTTCGTAAATGCATCTGAGAATGAAACAACATCAATCGCCATTTCAAATTCTGCCACTAGCCTTATGACTATAAACTCCAGTCAAGTTACCAGTGTTATTCGTATGGCCACAACTAGTCAACATCAGCAGCAAGAGCAAATGCTAAATTCCTTGGGAAGCAGTAAAAACTCTACCGAAGCGCAGGATTTATCACGATCGCAACAGAAAGTTCAATCTATTACCAATTTCAAAACATCGGGCCATACGCCCTTGGCTCGTAAAGGTCCCAAAAAACTAGTTATTAAGCCAAAATCTACAAAGACTGAAGTTTTGACAACCTCAACCACTGCAATCgaaccaaaacaaaaacaaactaataATGATAAAGAATTGCCCACTACTTCTGCTAAGGCTCAGCTTGAGTATACAAAACAAACTTCCCTAGAAGTGGATCCACCAAATACAacagatataaaaattaaaaatgaaccCATAACATATGAAAATCTCCAACAGCAGCCTCAGTATCAACCACCTTCAAATTTCAGCATCTTGGAGCAGCATCTAAGTTCGAAGGAACCCATTCTAGAGTTTACAGAGGAAAAGCCTCGTATAACGGAAACAAATTTACCCCCAACTTCAATCATAAAGGAAATGAAGGTAGAAAACAATGTTAACGACGATGCACGTGTTCTATATGATTTTGCTAATTCCAAGAAACCACAAAACGAAACACCATCAATTTTTCCATCATCCACGTCGCTTTTTTCAAGTAAACAAAATTCCGCAAAAATAACATCATTCGAAGAGCCACAAAGTCAGCAACTCAGTAAAAGCATCAGTCATGATAATGATacttcatcatcatcaacatatTCTTCTCATTCAGTTATGGACGCTTCAATGCCACCTGAAGACCAAAATGAAAGTTCAGCTACAAGTGCTTCAGCTGCAACGACTGCTCAAACTCAACATCAAACGAATCAGGTGTATACCGATTTTCACTTCAATTATCTTTATAATCATGCTGCGAACAATGTAATTCCGCTTGCCAATGAACAAGGCGGCATTAAGAGCCATCAACAATTTTCATCTTTCTATCAAAATtctaacaataacaataatacaaTGTTGTTGGAAGACTCATCTTCTAGTAAACACTACACAGAATAtcaacaatttcaaaataatcatCACCATTTACAGCAACAACATCAGGTTGCCGGAGCGCCACACGATCAATGGTTCAACAATAATAACTACCCCACATCGGAACCCAATGTTACACCAATTACTTCAAACCATTCAATCTCTAACTTGAACAGCGGCTTATCCGTTGATGCTAATACCGCTGCATTAGAAGGATCTGAAGCTGGTAAATATTTGGACTTGGATTCATGCAAACGGGAGCAAAACATTGATGTTAATGCTGGTGACCGATTGACTGTACCACCACCGCCTCCACCATCTTCCTCAACTTCGTGTTCATTTAATGGTACAACTGATAACAGTATGGCTGGTATATGTTCGACTGCAGTCACTCTTAATATACGTACGGATGAGAAAATGCCAGCTAAAGGTGAAATTTCCGAACAGGAAAGTAATTGCGACATTGATAACTCATGGAGTCAACCGATGTATGGCGATATTTCGGCGCGATTCTTCAAAACAACGTTTCCCGGAATTTTTCCGCAAGACAACGGTTGGAACCATGAGGAGTACTTTGCTGTACAGGATTTGAGTGCATCAACTACTGCTCAAGCTACTAACAGCGCTAACAGTAGAGTGAGAAGcTTTGATCAAACCAATAGCAGCCACAACAACAGCAATGGAATGCCAATATTTTCTCAAAACTCAAATGATAATTGCAATATTGATGTAATGCCATCAACATCAGCTAAAATACGTAAGAGACGAAAGCGTACTTCTCAAGATGGCAAAACGTCACAATCTATTGGTAAGCGCTTGCAACCAACATCGACTGTAACCTCTCAGCAAATGCTAATGCAGCATCAAAGTGGGATATCAGGGGTTGACTTTAGCTTCCAACATCATCAGCAGATCCATTTACAACAACAGCATTTTCAGCCAGCAAGTACTTCTACAGCATTTTTGGCAGGACCATCAAGTGCTGGTACTGATTTAGCAAGTGGATTTATtatgcaacaacaacagcagcaacaacagcctCAACAACAGCCTCAACAACAGCAAACCCAACAAAAGCAACGCACAAAAGTATATGAATGTGGTCATTGCAACGCCAAATACTCTAAACTTAAAGATCGCAATGCTCACATGATTGATGTTCATAATTACATACGGCAAAATAGAAGATTAGTATGTCCCGCAACTGGGCTTGTCACTCCTCTAAATATTTCTGATATGCAAGATGTTGCTTTACCCACAACAAGTGCAGCTGGTAGCACTTTAATGCCTGCTTTACAAAATATCGAGTGTATGGGGGATTCTAAACAGGGTATAGTAAAAATAGAAAACGAAAATCCTCAACGTGATTTGCCTGGCGTAGAGCCAATCAAGGCCGACTTAAGTgctaaaaatgaaattatggAGGACGATAAACAAAGCTTTACCCTGGTATCCTTGAGTACCGCAAATGTGGAAACTACTCTTGAATACGACACTAAACCACCAACCAGTAGCTTGCCATTGTCACTGACGACTCCCAGCAGTAAATTAACAACACTCTATCGCATGCTAGTGTCCTTCAATATGacaacattaaaacaaaatcaaaacctTTCAGAATTCGACGAGAATCTCATAaaatcatcaatatttttttgttacatttgtCGGCAGAATTTCAATTCAGTAAAATTGTATGATGCCCATTTGACTGAACATCCAGCTGAATGTTTTACATGCGGTAAAAAATTCCAGCGATGGAAAAACTTCTCCTTGCATTTGAAGCGACATTTAGGTTGGAAGGAATTTGGTTGCACTGTATGCGATAAGAAATTTGTTGTGAGAAGTGCTCTCGTTGAACATATGCGCATGCACTCCGGACTATCCCCGCTAAAATGTAAAGTTTGTGGTAAACACTTTAAGCGCTATTCCAACTTAACTCAACATCGCAAACGTCATACGAAACAAATTATTCGTAGGAAAGAGTATGTTTGTTATTGTGGAGAAGTTTTACCATCTAAAGCACGTTTCTTATGGCATAAAGAAACTCATGATTCAAAACCAAAATGCTGTCCACATTGTTGTGACCGTTTCGTACATGTCAACTCTCTGCGGCGACATATACGTCTCGCTCATTCGGATAAATTCGATTATACCGAACCGATGGAGTGCCCAATATGCAAGCAAATATTTGCTAAAGCCTCTATGAAAGCTCACATGGCGACGCATTCCACAGAAACGCAATACGATTGTGCTATTTGCAGCAAGACCTTTTCAACAAaatggaatttaaaaatacattcctGGGTACATGCCAATCGCACCTCTAAACCCTTCAAATGTGAACACTGTCCTAAGGCATTTGTGCGAGAAGTTGACTTTAAGAATCATATGAATTCCCACAAACAAATTAAACCATACACGTGTGAAGTGTGCGGTTGTAAGTTTATTCGCAAATATAATTACATGCGCCATAGAAGAGAGCACCATGGCAATAAGAAGTACACCTGTGATCTATGTAAAAAGTCGTTCCATCGCCATTACTATCTCATTGAGCACAGGCGCATTCACACCGGCGAACGACCTTTTCAATGTTCGATATGTGGTAAAAGTTCAACAACCAAAACTAATCATAATAAGCACTTGAAAATCCATCATTCACGCGATCCCTTTACAGTGGAAGTTTAA
Protein Sequence: MTENVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVQMTISGTGAGNSNSNTLASALAGESRKGNATKKQSSDLEEKSLSSINDNEFDIGTAGNSSSAILSNSASNCSLSNQSVCSSQTANSVLSISDKKERHNENEQENKNLTSPSIVSVSKVVKTETTNKVAMTKNIVAGNENIDQCFSKLNFNPTNLISNSTANASHSYQRSAIELTNTTNNIHNNNFNVFGGNTRYDQQQRNVVNNQNTLSTLPHMPPPPPPASPQSQHPGQHHEIVGRGNIPTGSSGTFHSMHPQQFSLPPQPHITSPHLGNTSSGSRQTHMYTSGQHQQPPTNSHHAQSLKVIYTPNLPPPPPLQLFTYQAQTHLQQHQKPPPAYGTAISQIRSQHNQSKHQVTGSLATQHQHQTLLAHSVVQQQQQMQQQHHLQQHHTLQHNLRIQVPPAPSPPPIPTKHTYSAKNNDLANHSTTSKHSQSQLHQQQSKADLSQRQQHQQQQEQQQPQHNSESVQDSNNHIFNSHEILNKSSLKEASSPNSQNSNAIVPSYPQVSISPSAASASMASVAASTLGRHTNSPFAALLAAAAGAPSPSNTSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDTGEFSVIERIYQSPPSVLHIHDDDDDEDDDDDKCKEQIEDEKRDHVDSDPNQHDVNVGENEKSKDEFDDTQRKTSSENVKTKKTKRKTNTEGQNSVDNEIVDFVSISSDSGDEEEFISQEKNDRKNTTEKNNINLSSSTCNSSMSTMPSQSSSPTSAVSPTLPTTGDDQSISITPTSLHTSSSSSATSNTNSIQQNSGVSINSNTTSRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKVAAQRKTLASIAPIPLVKIEKEEPMDEDIATDTTTSAATEISTDFETAPPLKANKHETEEITDIPNSSYSKKTRNNHNIILTSDLEQDEQDEKKPQVFVNASENETTSIAISNSATSLMTINSSQVTSVIRMATTSQHQQQEQMLNSLGSSKNSTEAQDLSRSQQKVQSITNFKTSGHTPLARKGPKKLVIKPKSTKTEVLTTSTTAIEPKQKQTNNDKELPTTSAKAQLEYTKQTSLEVDPPNTTDIKIKNEPITYENLQQQPQYQPPSNFSILEQHLSSKEPILEFTEEKPRITETNLPPTSIIKEMKVENNVNDDARVLYDFANSKKPQNETPSIFPSSTSLFSSKQNSAKITSFEEPQSQQLSKSISHDNDTSSSSTYSSHSVMDASMPPEDQNESSATSASAATTAQTQHQTNQVYTDFHFNYLYNHAANNVIPLANEQGGIKSHQQFSSFYQNSNNNNNTMLLEDSSSSKHYTEYQQFQNNHHHLQQQHQVAGAPHDQWFNNNNYPTSEPNVTPITSNHSISNLNSGLSVDANTAALEGSEAGKYLDLDSCKREQNIDVNAGDRLTVPPPPPPSSSTSCSFNGTTDNSMAGICSTAVTLNIRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTTFPGIFPQDNGWNHEEYFAVQDLSASTTAQATNSANSRVRSFDQTNSSHNNSNGMPIFSQNSNDNCNIDVMPSTSAKIRKRRKRTSQDGKTSQSIGKRLQPTSTVTSQQMLMQHQSGISGVDFSFQHHQQIHLQQQHFQPASTSTAFLAGPSSAGTDLASGFIMQQQQQQQQPQQQPQQQQTQQKQRTKVYECGHCNAKYSKLKDRNAHMIDVHNYIRQNRRLVCPATGLVTPLNISDMQDVALPTTSAAGSTLMPALQNIECMGDSKQGIVKIENENPQRDLPGVEPIKADLSAKNEIMEDDKQSFTLVSLSTANVETTLEYDTKPPTSSLPLSLTTPSSKLTTLYRMLVSFNMTTLKQNQNLSEFDENLIKSSIFFCYICRQNFNSVKLYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKVCGKHFKRYSNLTQHRKRHTKQIIRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECPICKQIFAKASMKAHMATHSTETQYDCAICSKTFSTKWNLKIHSWVHANRTSKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01138377;
90% Identity: -
80% Identity: -