Gvir036315.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101444.1:65115510-65121535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.19 20 7.1 0.7 1 23 267 290 267 290 0.93 2 13 0.014 1.5 10.6 1.2 2 23 369 391 368 391 0.95 3 13 0.00071 0.076 14.7 1.6 1 23 740 762 740 762 0.99 4 13 0.00029 0.031 15.9 5.0 1 23 768 790 768 791 0.95 5 13 2.8e-05 0.003 19.1 5.1 1 23 799 821 799 821 0.98 6 13 0.017 1.8 10.3 0.2 1 23 827 850 827 850 0.97 7 13 0.052 5.5 8.8 0.7 1 23 984 1006 984 1006 0.97 8 13 0.0026 0.28 12.9 0.8 1 23 1012 1034 1012 1034 0.97 9 13 0.0036 0.39 12.4 6.8 1 23 1040 1062 1040 1062 0.98 10 13 3.5e-06 0.00038 21.9 0.1 1 23 1068 1090 1068 1090 0.99 11 13 0.001 0.11 14.2 7.3 1 23 1096 1118 1096 1118 0.98 12 13 0.00031 0.033 15.8 4.0 1 23 1126 1148 1126 1148 0.99 13 13 4.5e-05 0.0048 18.4 0.3 1 23 1154 1177 1154 1177 0.97
Sequence Information
- Coding Sequence
- ATGATCAACACATTGCTGGAGCATGTACCCATCAAAATGGAAGTCAAAGATGTTGACAACTCTACAGACCCTTCAGCAAATGATGAAGTGGCAAAAGATGATGATAAAATTAATGAGACAGATGAAGAtctagatgatgatgatgacgatgaagaAGAAGAGTCAGATACTGAAAGTGAAGCCTTGGAGATTGAACAAGAGGCTACTATGATAATAAGTAGTGATGAAGAAGCTGAATTGGAGGCACAGAGAATACGTTTTCCCGATATTACAAAGAAATTACGCAAAGATTCTGATAACTCAAATAATTCTTCAAGAAGCTCTTCGAGAAATAGCCAATGCAGTAATACATCCTCTAAGCCACATATTACTTACGAAATTATAACTAGAAAAGTCACCATGGAGCAAACCGACAACAAACAAAGAATCTCACCTCGCCTTAACAATACGGAGAACAATAAAACGTTGGAGATCTGTAATAAAGAAAACGACAACAACAAGCAAACAAtgctaaaatacaaaaaggagaacaaaaaattggaaaataatacaactttgaaaaataacaaaaacaaacaagacGAAACGGGCCAACTTTTagataacaataaaacaacagCAGACAGCCACAAAAAGAATGAACATTTGCTCAAATCGCCAGTTAATGTTCCCGGGCAAAAAAGTCGTCGTGGCAGTAATAATTCCGCCTGCAGTGTTGCCTCTACGGTGACCTCTGAAAGTGCCGAAACAGAATCTTGTGGCAATATTTATGTCTTTAACTTGCAacaaaagttaatatttaattgcgaATTTTGTGATTTAAAATATGGTGACTTGGGAAATTTTGGACGTCATCTTCATGAAGCTCATAAGCTTTTCAATTTGGACGAAGGTCCTGAGAAGGAAAATGCACCACGTAATTTAACCAAATCCAATCGTTTGCAGAATAATGCGCCAAAAACTTCTGCTAATGTTAAAAAAGAACCTTTACAGTCTTTTGATATAATGGCTGAACCACCTGTTGTGCTGCCGCCTTCCGTGTTGGCAGAACCTCTAGATTCTTGTGGCAATGTTTTTATGCTTAATCatcgtaaattatttttagtttgtggCTATTGTGAGTGCAAATATGCTAACTTAGATTTGTTTGAAAAACATTTGAGGCAACAGCACCGCATTTTTGAGGGTTGTCACAATGAGTTGAATGTGGTACCTAAAATAGAGATCAAAGAAGAAGAGTTATGTATTACAAACGTAGTAGAAAAACCAAATGTAATAGCTCCGCAGCCCATGGTGGCAATACCCGTTGAAATTCCTTTAATTATAACACCCGAAAATGAACCCGAAAGCAATACAAATACAGCTGCTTTAGaggaaacattaaaaacaagtGAAGTTAATAAAGAAGAAGCTACTATATTCACTCCTGTTGTAGTAACAAAATCCTTAGATTCTGAAATAGATAAGGAATTAGAAAGTCCAGTCAAAGCTAATGTAATTTCAAACACtaacgaaaatgaaaatgtaGATATTGCGAATAAGGAAATATCTTCACCTAAGGAagttgaaaataatgaaataccATCGCTTAAGCAAGTTGAGAGTAACGAAATATCATTGCCTAAGGAAGTTGTGAATAATGAAATATCTCCGCTTAAAATAACAAGGAGTAAAAGACGTTCTTCAAACGCTGCGTCATTATCGTTGACCAATAAAAGGCCCAAAAGGAACACACGGAACAAAGATCTGAAAGAGcCTATCACCACAAATAAAGTTGACAAACTTCCCGAAAAAAGTTCAGAAAATGCACGAATAGATTTAGAAACAGAAGAAATAACagaaattgcaaaaacaaaagaaatagtgAACACAAGCAAGTATTCAACTTCAGAATTAGTTGAAGCCACCATTCCAGAGGCGACAGatacaaaagaaacaaacaaactcaAGAAACCTACCGAATGTGAGACAACAACAAAACCCGTAAAAATGACTGAAGCCAGAGTAAATAGAAAATCAACAaaagcacaaacaaaaaaatcaaaacaccaagaaactaaaaaaactagaaaaacaacaagagctgttgagaaaaaaaaactaacatccCAAGAAACAGTAGCAACGAGAAAAACTAGAAAGACTACAGAATCTCATCAAGTTAgggaaataaaaatggaacagCCTGAAATAGAAGTAAGCACTGTTGAATCTAAATTCAAGTGCTCGATGTGCCCTAAGGTACTTGCACATAAGCTTTCGCTGAAAATTCATGAACGCAGGCATACCGGAGAAAAGCCTTACGTATGCGAACTTTGTCACAAAACTTTCAGGAGCTGGGGAGGTCTTAGCCATCACAAAAAAGCTCATCACGTGGATAGAccccacaaaaaatttaaatgcgaAATTTGTGGCAAAAGGTTTTTCCACAGTAGTACTATCAAGAAACATATGTTCACTCACTCCTTGGTGAAACGGTTTAAATGTGGCATTTGTTTGCGTGGCTACGCTTCAAAGGACAGACTATTTCTTCATATTGAAAGAGATCATAAACCCGGAGAAGAACTTGataagagtaaaaaaaaatcgggTCGGAAACAAGTTGTGCCAAGCACAAAAGTGGAAGAAGACACGTCACCAACGTTGCCCACAAGCACACCATCCCTAGTTGATATAATGCAAGAAACTACGTTGCCCCAAGAAAACATTACGATAGATGAAGACCCGGTTGGTGAAATTCTTGAGCAATTGCAAAATGAAATGGTAGAAAACGAATTAGAAAATGGAGAGGTGAATGCAGTGACTTTCACCATTAACGCTGTTGTACCCGATAGcgaagaagaaacaaaaaagtctCTGGTGTCTAGGCCAATGGCCTTTGACGGTCAACTCAATGCAATAGATGGCACAGCCAATGCTCAACACCACCTTTTGAAGGTTGTTAGACGTTTCTTCTGTAATGTTTGTCCTAGTACGTTCGACAAACGCATACGACTGATCGAGCATAAACGTGTGCATACGGGTGAAAAACCTTTTGTTTGTGATGAATGCGGCAAACAGTTTCGTATACGTATTCgcttaaaagaacacaaattacgacattccaaagaaaagaaattcaaatGTGAAATCTGTCAATTAGCCTGCTGCACCAAACAAGATCTAAACCTACACATGCGTCATCATACCAACGATCGTCGCTACCAGTGCACAATGTGTCCTAAGGCGTTTGTGCGCGGTTCTGATTTGAAAATACATGTGCGTGTTCATACCGGCGAGAAGCCATATATATGCGAAATATGCCACAAATGCTTCCGGGCCAATCAAAATCTGTGCGTGCACAGGAAATCTCACATGGGCGAGGCCTCCAAAATCTACAAATGTGAACATTGTGAGAAAAAGTTTATGCGCAATATCGATCGCAAAGTGCATATGAGATCTCATACGGGCGAAAAGCCTTACAAGTGCGAGATTTGTGAACGTGGCTATTCTTCGAAATACAATGTACGAGCACATATTGAAAGAGATCATATAGCGACTAAAGATGGAAATGATGCAGTTCCGAAGGGTAAAAGAAAACCGGGACCAAAACCCAAAGCCTTAAAGGAGGAGTtagaaaagcaaaagaaattgatAGAGGAGCTACGAAATCAGCTGTGGCATCAAATTAAAACCGACGAAAAGATTATACCATCCGACGAAGAAATGCTACAACAGCAAACTTTACAAGATTCTAATGCAACAGACAATTCTCCGTTCCGTACAATCAGTGATATGGATGACCCTATTCAAAGTGCTTACGATTTGCTGAACAAACTGAAATCATCAACAACTACCTCTAAACCTCTAACAGCAATACCATCGCCTCCTCCTATGGCAGAGCCACCCTCTAATCCATTTACAAAGGCCAAAAAAGACTCAACAACTTTACTACCTCTTACTATAACCCAAAAAGTAGAACAAGCTTCAGCTTCACCAGCAACCTCATCTTCATCATCTTCCAATTCATGTCTTACTACACCATCACCCCCCAAAAGCACATCCACTAAGGTAGTGTCACAAAAGACCTCATTGGGCATACAACAAGTATCGGTGACTGTTTCCATGCAAGTGGAAAATGTTACATCAAATCCTACCGCACTCGAAAAAGAGAATGCGGATATTTTGACAACCAGTCCCAGTGGTACGAATAGTGCTAAGAaggaaagaaaaattacaagttATTTTACAGTAGTTGGTCAGAAAGCAGAAGTTTAA
- Protein Sequence
- MINTLLEHVPIKMEVKDVDNSTDPSANDEVAKDDDKINETDEDLDDDDDDEEEESDTESEALEIEQEATMIISSDEEAELEAQRIRFPDITKKLRKDSDNSNNSSRSSSRNSQCSNTSSKPHITYEIITRKVTMEQTDNKQRISPRLNNTENNKTLEICNKENDNNKQTMLKYKKENKKLENNTTLKNNKNKQDETGQLLDNNKTTADSHKKNEHLLKSPVNVPGQKSRRGSNNSACSVASTVTSESAETESCGNIYVFNLQQKLIFNCEFCDLKYGDLGNFGRHLHEAHKLFNLDEGPEKENAPRNLTKSNRLQNNAPKTSANVKKEPLQSFDIMAEPPVVLPPSVLAEPLDSCGNVFMLNHRKLFLVCGYCECKYANLDLFEKHLRQQHRIFEGCHNELNVVPKIEIKEEELCITNVVEKPNVIAPQPMVAIPVEIPLIITPENEPESNTNTAALEETLKTSEVNKEEATIFTPVVVTKSLDSEIDKELESPVKANVISNTNENENVDIANKEISSPKEVENNEIPSLKQVESNEISLPKEVVNNEISPLKITRSKRRSSNAASLSLTNKRPKRNTRNKDLKEPITTNKVDKLPEKSSENARIDLETEEITEIAKTKEIVNTSKYSTSELVEATIPEATDTKETNKLKKPTECETTTKPVKMTEARVNRKSTKAQTKKSKHQETKKTRKTTRAVEKKKLTSQETVATRKTRKTTESHQVREIKMEQPEIEVSTVESKFKCSMCPKVLAHKLSLKIHERRHTGEKPYVCELCHKTFRSWGGLSHHKKAHHVDRPHKKFKCEICGKRFFHSSTIKKHMFTHSLVKRFKCGICLRGYASKDRLFLHIERDHKPGEELDKSKKKSGRKQVVPSTKVEEDTSPTLPTSTPSLVDIMQETTLPQENITIDEDPVGEILEQLQNEMVENELENGEVNAVTFTINAVVPDSEEETKKSLVSRPMAFDGQLNAIDGTANAQHHLLKVVRRFFCNVCPSTFDKRIRLIEHKRVHTGEKPFVCDECGKQFRIRIRLKEHKLRHSKEKKFKCEICQLACCTKQDLNLHMRHHTNDRRYQCTMCPKAFVRGSDLKIHVRVHTGEKPYICEICHKCFRANQNLCVHRKSHMGEASKIYKCEHCEKKFMRNIDRKVHMRSHTGEKPYKCEICERGYSSKYNVRAHIERDHIATKDGNDAVPKGKRKPGPKPKALKEELEKQKKLIEELRNQLWHQIKTDEKIIPSDEEMLQQQTLQDSNATDNSPFRTISDMDDPIQSAYDLLNKLKSSTTTSKPLTAIPSPPPMAEPPSNPFTKAKKDSTTLLPLTITQKVEQASASPATSSSSSSNSCLTTPSPPKSTSTKVVSQKTSLGIQQVSVTVSMQVENVTSNPTALEKENADILTTSPSGTNSAKKERKITSYFTVVGQKAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -