Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101443.1:12591482-12593784[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00049 0.052 15.2 0.6 2 23 184 206 183 206 0.96

2 13 0.003 0.32 12.7 2.3 1 22 212 233 212 234 0.91

3 13 8.8e-05 0.0093 17.5 1.7 1 20 240 259 240 262 0.94

4 13 3.1e-05 0.0033 19.0 4.2 1 23 268 290 268 290 0.98

5 13 0.014 1.5 10.6 4.3 1 23 296 318 296 318 0.99

6 13 0.00019 0.02 16.5 1.2 2 23 408 430 408 430 0.96

7 13 0.0001 0.011 17.3 0.9 1 23 436 458 436 458 0.99

8 13 4.7e-05 0.005 18.4 0.8 1 23 464 486 464 486 0.98

9 13 1.3e-06 0.00014 23.3 1.9 3 23 494 514 492 514 0.96

10 13 0.091 9.7 8.0 6.3 1 23 520 542 520 542 0.98

11 13 0.00038 0.04 15.5 0.1 1 23 547 569 547 569 0.99

12 13 0.21 22 6.9 6.5 1 23 575 597 575 597 0.93

13 13 0.044 4.7 9.0 8.1 1 23 603 626 603 626 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00049	0.052	15.2	0.6	2	23	184	206	183	206	0.96
2	13	0.003	0.32	12.7	2.3	1	22	212	233	212	234	0.91
3	13	8.8e-05	0.0093	17.5	1.7	1	20	240	259	240	262	0.94
4	13	3.1e-05	0.0033	19.0	4.2	1	23	268	290	268	290	0.98
5	13	0.014	1.5	10.6	4.3	1	23	296	318	296	318	0.99
6	13	0.00019	0.02	16.5	1.2	2	23	408	430	408	430	0.96
7	13	0.0001	0.011	17.3	0.9	1	23	436	458	436	458	0.99
8	13	4.7e-05	0.005	18.4	0.8	1	23	464	486	464	486	0.98
9	13	1.3e-06	0.00014	23.3	1.9	3	23	494	514	492	514	0.96
10	13	0.091	9.7	8.0	6.3	1	23	520	542	520	542	0.98
11	13	0.00038	0.04	15.5	0.1	1	23	547	569	547	569	0.99
12	13	0.21	22	6.9	6.5	1	23	575	597	575	597	0.93
13	13	0.044	4.7	9.0	8.1	1	23	603	626	603	626	0.98

Sequence Information

Coding Sequence: ATGGATTCTAAAATATGTGTTACTTGTCTTTGTAAGCCTTCCAAAGCCCACAGTCTAAATGATGTTATAttagaaaatcttaaaatattagaaatactTCACCAACTTGTACCATTGTTGTTGGAAGAAGAAGAATTCACACTACCTGACATGATTTGTGCTGAATGTTTGGAAAAACTTgtaatttcttttaagtttCAAAAGCAATGTTTGGCttccttaaaaaatttacacaaattatGGTCGGAAAATTCTTTGAATAAAGAAAGCCAACAAAAACCGCCTCCGCCGAACTTGGAGTTCAAAAGTAATGATGAAGACACAATGGAATCTCTACCTGAAATTAAAGGAGATTTTAAAATGGATGATGAAATCGCAATTGATCCCTTAACTACAACTAAAGATCTACTATTATTTGGGCAAGATGATAAAAACAGAGAAACATATAAGAAAAATGCTGAAGGTGATTTCGATAGCAAAAATAGCTACAAAAACTTGGACGAAAAAACTAACCAAGTAGCTGTCAAAAATCCAACAGCTCTTTCAAATCAATGTAaactttgcaataaaatattcaaactacCTCAAGGCCTAGCTTCACATATGtcgaaaacacattttaaaaagcatttatatCAATGCCAAAAGTGTGACAAAGGATTTAGTGTGGAAGAACTTTTCATAAGACACTGTAATCTTCATTTGGGTATCAAACCTTTTCCTTGCGCCCAGTGTGATAAAGCTTTTGATACTAAGAGTAGTTTAAATCAGCATTTGCTCTGCCATTCTAAAGAGTCTTCTTATTCATGTACCGTTTGTGGAAAAACGTTTCATCGTAGGGATGTTTACAAACAGCATATGCAACGCCATGACGACAAAGAACTGTTCCAATGCTTGAAATGCGCTAGAAGCTTTAAATCTTTCTCTGACCATATAAAACACATTAAGACACATAAAAGTGATACCTATGATGGTAATGAAGAAATTATGATGAACTCtctaaatgaaaatgaaataatagaAATGCCACTGGAACAAATATTGACGGAATTTAAGCCTGAAAATAAGGATGAAAAAACAGAAGATGAGGGAAAATTCAACGTAAAATTTGATGAAAGTAAAAGCGGAACTGAAATGGCATTTGCAATAGACAAAAAAACTAATGACGATATCATTAAAGATCAAGAAAATAATGAGTCAACGATATCGAATGAATCAGCTCAATGTGATCTATGCAatcaatcatttaaaaattctcaAGGTCTAGCCAGGCACAGGTCTAGCACACATTTCAAAAAACACTTATACCAATGTGATCAGTGTGATAGAGGTTTTAGTGTAGAGGAATATTACATTAAACACCGTAATCGTCATTTAGGCATAAAAACCTTTAAATGTAAACAATGCGACAAAGCTTTTGAAACTAATAGCATCCTTAACCAACATTTAATATCCCATTCTAAACTAACGCCACATTTATGTACGGTTTGTGGCAAAAGTTTTCGCCGTCTGGATGGTTTAAGGCAGCATATGCTACGTCACGGAGACGAGAGACCATTTAAATGCTCATTATGTCCTAAAAGCTTCAAATGTCACTCCGATAAATTGAAACACATTATTAAACATGATGAAAAACGCTACGAGTGTAATATTTGTGGTTCACGTTTAGCTACTCCTGAGTCCCTCTCGCAACATAAAATGACACATACGGGCGAAAAGCCATTTAAATGCAGTTATTGTGATAAGAGCTTTATCTGCTTATCTAATATGAAATGCCACGAGAGAATACATACTGGTGAAAAGCCTTATAAATGTCAGTATTGTTGCAAATCATTTCGCCAAAGCAATGATCgcaaaaaacacacaaaacgCATGCATAAAAATGAGCTAAATGAAAGAGGCCTAGaagaaaacttataa
Protein Sequence: MDSKICVTCLCKPSKAHSLNDVILENLKILEILHQLVPLLLEEEEFTLPDMICAECLEKLVISFKFQKQCLASLKNLHKLWSENSLNKESQQKPPPPNLEFKSNDEDTMESLPEIKGDFKMDDEIAIDPLTTTKDLLLFGQDDKNRETYKKNAEGDFDSKNSYKNLDEKTNQVAVKNPTALSNQCKLCNKIFKLPQGLASHMSKTHFKKHLYQCQKCDKGFSVEELFIRHCNLHLGIKPFPCAQCDKAFDTKSSLNQHLLCHSKESSYSCTVCGKTFHRRDVYKQHMQRHDDKELFQCLKCARSFKSFSDHIKHIKTHKSDTYDGNEEIMMNSLNENEIIEMPLEQILTEFKPENKDEKTEDEGKFNVKFDESKSGTEMAFAIDKKTNDDIIKDQENNESTISNESAQCDLCNQSFKNSQGLARHRSSTHFKKHLYQCDQCDRGFSVEEYYIKHRNRHLGIKTFKCKQCDKAFETNSILNQHLISHSKLTPHLCTVCGKSFRRLDGLRQHMLRHGDERPFKCSLCPKSFKCHSDKLKHIIKHDEKRYECNICGSRLATPESLSQHKMTHTGEKPFKCSYCDKSFICLSNMKCHERIHTGEKPYKCQYCCKSFRQSNDRKKHTKRMHKNELNERGLEENL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -