Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101443.1:12599869-12602943[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0011 0.11 14.1 3.7 3 23 209 229 208 229 0.97

2 12 0.00027 0.028 16.0 1.4 1 23 235 257 235 257 0.97

3 12 0.0018 0.19 13.4 0.0 1 23 269 291 269 291 0.93

4 12 0.00028 0.029 16.0 0.5 1 23 296 319 296 319 0.97

5 12 3.1e-05 0.0033 18.9 1.6 1 23 325 347 325 347 0.98

6 12 2.5e-06 0.00026 22.4 3.8 1 23 353 375 353 375 0.98

7 12 0.00044 0.047 15.3 0.9 1 23 381 403 381 403 0.94

8 12 9.9e-05 0.011 17.4 1.4 1 23 408 430 408 430 0.97

9 12 7.6e-05 0.0081 17.7 1.4 1 23 436 458 436 458 0.96

10 12 0.00011 0.012 17.2 3.9 1 23 464 486 464 486 0.98

11 12 9e-06 0.00096 20.6 0.9 1 23 492 514 492 514 0.97

12 12 0.00022 0.024 16.2 1.1 1 23 520 542 520 542 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0011	0.11	14.1	3.7	3	23	209	229	208	229	0.97
2	12	0.00027	0.028	16.0	1.4	1	23	235	257	235	257	0.97
3	12	0.0018	0.19	13.4	0.0	1	23	269	291	269	291	0.93
4	12	0.00028	0.029	16.0	0.5	1	23	296	319	296	319	0.97
5	12	3.1e-05	0.0033	18.9	1.6	1	23	325	347	325	347	0.98
6	12	2.5e-06	0.00026	22.4	3.8	1	23	353	375	353	375	0.98
7	12	0.00044	0.047	15.3	0.9	1	23	381	403	381	403	0.94
8	12	9.9e-05	0.011	17.4	1.4	1	23	408	430	408	430	0.97
9	12	7.6e-05	0.0081	17.7	1.4	1	23	436	458	436	458	0.96
10	12	0.00011	0.012	17.2	3.9	1	23	464	486	464	486	0.98
11	12	9e-06	0.00096	20.6	0.9	1	23	492	514	492	514	0.97
12	12	0.00022	0.024	16.2	1.1	1	23	520	542	520	542	0.97

Sequence Information

Coding Sequence: ATGACTGCAATTCTATTGGGACGTATATGTCGTACCTGTTTAAAAAAGTCTGCCGATATGCTTAAATTGAGTGAGTTTATTAAAGATGATCTACAAGTTGAGTGCATGCTTAGCCAAACTGTACCCAATTTTGATCTGGAAATAGAAGATATTCCTTTACCGGTGGAGATATGTGAAAAGTGTCTGGACAAATTACGAACATCTTATGATTTTATTCAAATGTGTCTAAAAAGCAATATAgagttgaaaaatgttttcaatcaACAGGAGAAGGAAATCAAGAGCAACCTGGAAGGTGATAAAATGGACTATTTGGAAGAAACCGACATTCTAATGGACAGTTTCAACAAAGAACTCTTTGAAAATCATTCGAACGTAACTCACGGACAAGCTAATGGTGACAGAGGCAAAAGTCCTGATCTTAAAATAGAAGTTGTTAATCTTGAATATAAAACGCAAAGTGAAAGTCACCACGAAGAAAATGGTAGCTCGGATGAATATTGGCCTAATGATAAAGAGGATAGTGATAGtcatttctttgaaaaaatggGAAATGGCCCTTTAGGtgcaacaactaaaaaaaaatataaaaaagtacctcTAAAACGGGGTGGCTCGAAAATTTGTCTTCATTGCAATAAGGTTTGTGCCAACAAGAATCTATTAACCAAACATTTGTCTGTGCATGACTCGGAACATAAATTTGTATGCGACGTATGTGACTATCGCTTTGCcactgaaaaaaaacttaaaactcacAGCTCTAAACATTCGGGCGTAGCAATAAGTTTGTCTGCTGGTCCATATCCCTGTCCTGACTGTCCAATGATTTTTGAACAAACTCGCTCATTGGCTGCCCATAGTGTAATACATTCGGAAAGAGATTTTCCATGTCAGGTGTGTAGTATGACTCTTAAAACGACAGCCGCCCTTACCAGGCACATGAACAGCAAACATCCTGATGTCTTACCATATAAATGTAATCTATGTGATAAGTCTTTTCCATTGgaaaaccatttaaattatCATATTAACGAGCATATGGGTTACAAGAaacataaatgtaatttttgtgataaaaGTTTTCCACACAGTACTGCCTTAAAGGATCATATACGTGTACATACTGGCGAATCGCCGTTTTTGTGTGCACATTGCGGAAAAGCATTTAAAGCCGCTAATGCTTTGCGTCAACATTCACAAAGACATGGTGAGATAAAATTCCACTGTCCCGAATGTCCCatgatattttttctcaaaGTAAACTTAACTAAGCATATGACTTCCCACACTAAGCTGAAATCGCATGTTTGTGATGTATGTGGTTCAGCTTTTACCAGAAAAGATACCTTAAACGCACACAAATTTAAACATACCGGGGAAAGACCTTTTGAATGTGAGGATTGCAATATGagatttgtttttaaacgtCACTTGAAGCAACATAAAATTACTCATACAGGTGAAAAACCTCATATGTGCAATTTTTGTGATCGGGCATATGCATCAAGCGGagatttagtaaaacatttgcGCACTCATGTAGgtgaaaaaacatatttttgtgatCAATGCCCggaatcatttaaatattcaCTCGACCTTAAGGaccataaaaatatgcattataaagaaaaattaaatttggaagaaaataatatatcttGA
Protein Sequence: MTAILLGRICRTCLKKSADMLKLSEFIKDDLQVECMLSQTVPNFDLEIEDIPLPVEICEKCLDKLRTSYDFIQMCLKSNIELKNVFNQQEKEIKSNLEGDKMDYLEETDILMDSFNKELFENHSNVTHGQANGDRGKSPDLKIEVVNLEYKTQSESHHEENGSSDEYWPNDKEDSDSHFFEKMGNGPLGATTKKKYKKVPLKRGGSKICLHCNKVCANKNLLTKHLSVHDSEHKFVCDVCDYRFATEKKLKTHSSKHSGVAISLSAGPYPCPDCPMIFEQTRSLAAHSVIHSERDFPCQVCSMTLKTTAALTRHMNSKHPDVLPYKCNLCDKSFPLENHLNYHINEHMGYKKHKCNFCDKSFPHSTALKDHIRVHTGESPFLCAHCGKAFKAANALRQHSQRHGEIKFHCPECPMIFFLKVNLTKHMTSHTKLKSHVCDVCGSAFTRKDTLNAHKFKHTGERPFECEDCNMRFVFKRHLKQHKITHTGEKPHMCNFCDRAYASSGDLVKHLRTHVGEKTYFCDQCPESFKYSLDLKDHKNMHYKEKLNLEENNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00760314;
90% Identity: -
80% Identity: -