Gvir024730.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101443.1:7316090-7318874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0036 0.38 12.5 0.5 1 23 124 147 124 147 0.94 2 13 0.00058 0.062 14.9 0.7 2 23 153 175 152 175 0.93 3 13 5.6e-05 0.0059 18.1 4.4 1 23 184 207 184 207 0.97 4 13 4.5e-05 0.0048 18.4 5.2 2 23 422 443 422 443 0.98 5 13 6.3e-07 6.8e-05 24.3 2.6 1 23 449 472 449 472 0.96 6 13 0.00082 0.087 14.5 1.2 1 23 477 500 477 500 0.97 7 13 2.7e-05 0.0028 19.2 0.7 2 23 503 524 502 524 0.96 8 13 0.0072 0.77 11.5 3.6 1 23 529 552 529 552 0.98 9 13 0.00032 0.034 15.8 0.8 1 23 558 580 558 580 0.96 10 13 4e-05 0.0043 18.6 1.6 1 23 586 608 586 608 0.98 11 13 6.5e-07 7e-05 24.2 1.5 3 23 616 636 615 636 0.99 12 13 1.1e-06 0.00012 23.5 0.7 1 23 642 664 642 664 0.99 13 13 0.014 1.5 10.6 0.7 1 23 669 692 669 692 0.97
Sequence Information
- Coding Sequence
- atGGACACAAGTACAATTTACGATATGAGCGTAATTTGCCGTATATGTATGCAGGAAGATGATgagttattttctatatttaatgaACTATTCTTCGACAACAAAGCCATTACTATAGCCGAAATTATTGCAGAGTGTACAAGGTATCCAGTAGTACATAATGATCAGCTACCAACACAAATATGCAAAGCCTGCAAGGAAGCAGCTCGGAATgcctataaatttaaaaaacagacaGAAGATGCTTATCGCCATCTAAAGGTAGTACAAGATATAAGTAGGGTTTCCCAAGAGGAGAAGAGTAGTCGTGTTAAGATGGTGAGGTTCCTCACTGCTGACAAGTATACACAAACTGAAAAAGGCAGTGTGTTTCAGTGTGAGATTTGCACGAAAAAGTTTTTTGCGGAACGTGAATTAAGGGAACATCGTGCCAACATCCACATTAATGATGGAAAAAAATGTCGTGTATGTGGCGTAACATTTAATCATTTGGGTcaattaaaagtacatttatcAGCAGAGCATCCCAGTGAAGGCATACGTTgtgattttaaatgtaatatatGCTCAAGAGGGTTTACCCGTGGCCATCATTTAAAAAGACATTTAATACGGGTGCACAAAgtcaaagatatttttaatatCACTAAAGTATCACTTGATGaacaagaaattgaaaatcacaCAGTGCTGTCAGCAAGTTTAAATAACTTCAACAATCATTGGCCAGATTACCAAGAGGAAGATGACAACGAACCAATTAATTCCCAACAAAATGAAACTGTTACTGATACGGATCCGTTCTCGAAGGATGTTGAAAGGCTTGATTATAACGATTTCAGCAACATGGATGAAGAAGTTAAACAATTTGCAGAAGCTATAGCACATTCTGAAATATCCATTAAGGCGGAAAATCCTGACGTCAGCTACAACATTTCAAGCGatgaaaatgataataaatcCATTGATAGCTCTTTCGGTGAAATAAACTCCCCTATAGCGGCATCTAAACCGGAAAAATCgattgataaaataaaagagaTCTGCGATGAAGAAGATGAAAGTAatgcaaataattcaattattaagcACCATAATAACAATACTTCCAGTGAAGATGTCTCTGAAAATGGCGTCGATGATGATAATTTCAAAAGCACTAAAAAGCCAAAAAGGATTTTAACGAGAAAACATATGAAACAACCGCACACTAATGTTCAAAATCCTATAAGCTCAACTGCAAAACCTGCAAAACAAGATAATCGTTGTAAAGAATGCAATCGCACATTTACACGTTACAATCATATGCTCCGCCATATGCTTACACACAGTGATGAAAAGCCTCATGTTTGCAATATTTGCAGCAAGAAATTTTCACGTttggataatttaaaaaagcatataCAAAGTTTACACTGTGAAAAGAACTACAAATGTGATCAATGTTCAAGCGCTTATGGCCGCGAAGATCATTTGCAAAAGCATATAGAAATGAGGCATAACAAAGAATGTGATATGTGTGAGAAAAAGTTTACTACCAAAGCCGATTTAGCAAAACATAAATTGATTCATACCGGTCGACCTTATATTTGTAAGCATTGCCTAGAAACATTTCAAGAGAAGGAACAAATGAAGGAACACCAGAAGACAAAACATGCTCCGGCACGTAATTTTTTGTGCAATATCTGCGGAGATTCATTTCAAggaaataaatatcttaaaattcaTATGCGACGACATACTGGCGAGAAACCATATAAATGTAGTTTTTGTGAAAAAGGTTTTCCGCGTAGTACAGATTTGAAAATGCACGAAAGATATCATATGGGATATAAACCAAACCTATGCAACTTATGCGGTAAAGGTTTTCATCGTCCCTACAACCTAAACATACATATGCGCACCCACACTGGTGAAAAACCTTACAAATGCAATCAATGCTCTCAGGCGTTTGCTCAAAGTAATGATTTGAAAGCTCATATAAGACGTCATACAGGAGAACGTTTTCATTGTGAGTTGTGCAGTGCTGAATTCTTGCAACGTTATGGATTAAACGCTCACTTAAGGACGGTACATGGTAAAATAGTTACTGCAGTGAACGGTCGCCTGGTTAAAACGAATAAGCAAACTGATGGTGCTGAGGTACTTAAACAACAAGCACCAGCTAATCAAAAAGTTGCTGCTCAAGAGCAATCTCAATAA
- Protein Sequence
- MDTSTIYDMSVICRICMQEDDELFSIFNELFFDNKAITIAEIIAECTRYPVVHNDQLPTQICKACKEAARNAYKFKKQTEDAYRHLKVVQDISRVSQEEKSSRVKMVRFLTADKYTQTEKGSVFQCEICTKKFFAERELREHRANIHINDGKKCRVCGVTFNHLGQLKVHLSAEHPSEGIRCDFKCNICSRGFTRGHHLKRHLIRVHKVKDIFNITKVSLDEQEIENHTVLSASLNNFNNHWPDYQEEDDNEPINSQQNETVTDTDPFSKDVERLDYNDFSNMDEEVKQFAEAIAHSEISIKAENPDVSYNISSDENDNKSIDSSFGEINSPIAASKPEKSIDKIKEICDEEDESNANNSIIKHHNNNTSSEDVSENGVDDDNFKSTKKPKRILTRKHMKQPHTNVQNPISSTAKPAKQDNRCKECNRTFTRYNHMLRHMLTHSDEKPHVCNICSKKFSRLDNLKKHIQSLHCEKNYKCDQCSSAYGREDHLQKHIEMRHNKECDMCEKKFTTKADLAKHKLIHTGRPYICKHCLETFQEKEQMKEHQKTKHAPARNFLCNICGDSFQGNKYLKIHMRRHTGEKPYKCSFCEKGFPRSTDLKMHERYHMGYKPNLCNLCGKGFHRPYNLNIHMRTHTGEKPYKCNQCSQAFAQSNDLKAHIRRHTGERFHCELCSAEFLQRYGLNAHLRTVHGKIVTAVNGRLVKTNKQTDGAEVLKQQAPANQKVAAQEQSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -