Gvir029712.2
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- grau
- Assembly
- GCA_956483585.1
- Location
- OY101443.1:67898371-67919299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.4e-05 0.0079 17.8 2.9 1 23 392 415 392 415 0.96 2 16 4.5e-05 0.0048 18.4 0.1 2 23 421 442 420 442 0.96 3 16 4.8 5.1e+02 2.6 5.8 2 23 451 473 450 473 0.94 4 16 0.00028 0.03 15.9 0.1 3 23 480 500 478 500 0.95 5 16 0.00082 0.087 14.5 0.5 2 23 509 531 508 531 0.96 6 16 1.1e-05 0.0011 20.4 0.6 1 23 540 563 540 563 0.97 7 16 5.2e-06 0.00056 21.4 0.2 2 23 570 591 570 591 0.98 8 16 0.0034 0.36 12.5 1.0 3 23 599 620 598 620 0.97 9 16 0.00056 0.06 15.0 1.7 1 23 939 962 939 962 0.96 10 16 0.0049 0.52 12.0 0.0 2 23 968 989 967 989 0.96 11 16 3.4e-05 0.0036 18.8 1.2 2 23 998 1020 997 1020 0.94 12 16 0.037 3.9 9.3 0.5 3 23 1027 1048 1026 1048 0.95 13 16 0.00079 0.084 14.5 0.5 2 23 1057 1079 1056 1079 0.95 14 16 3.1e-05 0.0033 19.0 0.3 1 20 1088 1107 1088 1111 0.93 15 16 2.1e-06 0.00023 22.6 1.1 2 23 1118 1139 1118 1139 0.98 16 16 0.00057 0.061 15.0 1.1 2 23 1146 1168 1146 1168 0.97
Sequence Information
- Coding Sequence
- ATGAATTGTTTATTGTGTCTGAATATAAATGAAAGTGgtaaaaaatctttcaattcggACGAATGGAAGGAACTAAATATACAATATATCGTTGAAAAATATCTTTGGAAAATGgaaaatttaaataatcactCCTATATATGCCAAGAATGTTGGCAGGAATTGcacaattttcataatttctacttaaaaatcgaaaaagcccatttgaatttaaatattttggtgaAATCGGAAGTAGCTTCCGAAGATGTTTCAAGCAATAAAGAAGACTTGGgtgcacaattttttattgataacgaaaatcataaaattcaacCTGAGATTTTGTTCGTAAACATTGAAAGTCCTCTAAAAATTGTTGAAGTGGGAGAAGAAGAAAGTCCTTTAgagatttttgaaaaagaagatGTGGAAGAAGTAAGTAGTTTAAAAAACACTACTAAACGTAAacgacatttaatgaaaaatacaaatgacaagaaaaatatttgcaaaaataatccgaaaaaaatatttagaagagAAGATACCACCGTAATAAACAAGCCGGAATGTAAAGGAGGCCCAGATGAACAAATTTGTATCGAGCACAAAGAAAATTCTCAAATCGAACctgagattttatttttagaggAGGACAATCCTTTAGAAATGTTTGAAAAAGAATGTATGGGGGAAGTGAGTAGTTTAAAAAACACTACTAAACGTAAAAGACCTTTAAGGAAAAGTgcaaataacaagaaaaatattgcaaaaaataaacagaaaaaaagattgaaaaaagaaaaagttaccAAATCGGAAGATAATAAAAATCATGATGAAATTGACATGAAATTGAAAGAAGTAGAATATGATCCTAAGTTAAACAAGATTGATGAACATCTCAACGATCAGAAGGATATTTTTGTGAGTGATGTTGATCATTCCTCAAATTCAATTGATTCATCTAAATTAGAACAATCAAATCAAGAACAAGATAAATTCATATCCAAACACTTCCAAATTGCCTGCTCCCTTTGTGATATTCCACTGGCTACTTTTGACATAATGGCTAAACACTACAAAGAGCAGCACAGTCAACATGGATACGCTACTTGTTGTGATCAAAAGCTGTTTTCTCGTTTAGAAATAGTGGATCATATTAAGATACACCAAAATGCTGAATATTTTAAGTGTAAAATTTGCGATAAAGTATCAGTTACCCGGTCATGCCTAAGACAACACATTAAAGATAaccataaaaagaaaaatgttgaatGTGACATATGTGGCAAAAGTTTGGCAAATGCATCAAGTCTGAGAACGCATAAATTAATGCACGAAGccgacaataaaaataaaatacattgtgaACTATGTGATAAATCcTACCTCTGTAAACATTCATTAAACATTCACATGCGTCTTTTTCACTTAAAAGAACATATAATTTGCGATCTATGTGGTAAATCTCTAAGGGACAGTTACAGACTCAAAGTTCACATGTTAGAGCATGAAGGAAAGCCGAAATCAAAAGTAAGTTGTGAAGTTTGCGGACGCATTTTATCCGATGTGCCATGTTTAAAGCGACATATGCGCTCGTATCATCCCCCGAATGGAGTTAACCCTGAATTTAATTGTCCTgtgtgcaaaaaattatttacaagtaATGCTAATCTTAAAATGCACGTACGGAGGGTACACGAAAGTAAATACGAAAGAAAGTGTACATTGTGcggaaaaatatttaagaggCCGGCCGGCTTAAAGGATCATATGGCTTCTCATGCTGGTAAACCTTTACGCGCCTGTACCTTTTGCTCCAGGACATTTTATTCAAATGGTAATATGTATGCTCATCGCAAAAGAGCTCATCCAATAGAATGGGCGGAATCtgaaaatttaaataattactcATATATATGCCAAACATGTTGGCAGGAATTGAGTAATTTCCATAATTTCTACTTAAAAATCGAAAAAGccaattcaaatataaatattttggtgAAATCAGAAGTAGTTTCCGAAGATGTTTTAAAAGACAAAGGTATCCTGGCTGAACAAATTTGTATTGATAGCAACGAAAATTCTGAAATTCCACCTAAGATTTTGTTCGTAAAGGAGGAAAGTcctttagaaatttttgatgTGGAGGAAGAAAGTTGTTTGGAGGCAATGAATAAACAAGATACCAGTGTAATAAGCAAATCGGAAGATAAGGGTGATCTAGCTGAACAAATCTTTATTGTGGACAAGGAAACTTCTCAAATTGGATcagagattttatttttaaaggagGTAAATCCGTTAGAAATGTTTGAAAAAGAAGATGTGGGGGAAGTGAGTAGTTTAAAAAACAGTACTGAACGTAAACGGCCTTTAAGGAAAAGTACAAATGacaagaaaaatattgcaaaaaataatacgaaaaaaagattgaaaaaagaaaaagttaccAAACCGGAAGATAATAAAAATCGCGATGAAgaaattgacataaaattgAAAGAAGTAGAAAATGATACagaagaaaacaagattgatGAACATCTCAACGATCAGAAGGATAGTTTTGTGAGCGATGTTGATCCTTCCACAAATTCAGTTGATTCTTCCAAAGTAGAACAAGAACAAGATAAATTCATAGCCGAACACTTCCAAATTACCTGCTCCCTTTGTGATATCCCACTGGCTACATTTGATATTATGGTTAAACATAACAAAGAGCAACACAATCAGCGTGGATATGCTACTTGTTGTGATCAAAAGCTTTCTTCTCGCTTAGAAATAGTGGATCATATTAAGTTACACCAAAATcctgaatattttaattgtaaaatttgcgataaaatattaattagccGTGCATGCCTAAAGAAACACATCAAATATGCTCATAAAGAGAAAAATGTTGAATGTGACATTTGTGGCAAATTTTTGGCAAGTGAAGCAGGTCTGAAAACGCATAAATTAATACATGAACccgacaataaaaataaaatacattgcgAACTATGTGATAAATCCTACGTTTCTAGAGATTCCTTAAACACTCACATGCGGTTTGTTCACTTAAAGCAACATAAAATTTGCGACCTATGTGGTAAAAGTGAAAAGAACAATTACAGACTCAAAATTCACATGTTACTGCGGCATAGCGAGAAAGGGAGACCAACAGTCAGTTGTGAAGTTTGCGGACGCGTTTTATCCGATATAGGATGTCTAAAGCGACACATGAGCTCGAATCATCCCCCGAATGGAATTAACCCGGAATTTAATTGTCCTGtatgcaacaaaatatttacaagtaATGCTAATCTAAAAACGCACGTTTGGAGGGTGCACGAAAATAAATACGAAAGAAAGTGTACATTGTGCGGGAAAATATTTAAGTCATCTGGCAGCTTAAAGGATCATATGTCTACTCATACTGGCAATCCTTTACGCACCTGTACCTTTTGCCCTAGGACATTTAATTCAAATGGTAATATGTATGCTCATCGCAAAAGAGCTCATCCAATAGAGTGGGAGAAATCTGTGAGAGAAAAAATGGGTGGAAAATTGCCAGATAAATCGATtacaaaaacaatagaaaattaa
- Protein Sequence
- MNCLLCLNINESGKKSFNSDEWKELNIQYIVEKYLWKMENLNNHSYICQECWQELHNFHNFYLKIEKAHLNLNILVKSEVASEDVSSNKEDLGAQFFIDNENHKIQPEILFVNIESPLKIVEVGEEESPLEIFEKEDVEEVSSLKNTTKRKRHLMKNTNDKKNICKNNPKKIFRREDTTVINKPECKGGPDEQICIEHKENSQIEPEILFLEEDNPLEMFEKECMGEVSSLKNTTKRKRPLRKSANNKKNIAKNKQKKRLKKEKVTKSEDNKNHDEIDMKLKEVEYDPKLNKIDEHLNDQKDIFVSDVDHSSNSIDSSKLEQSNQEQDKFISKHFQIACSLCDIPLATFDIMAKHYKEQHSQHGYATCCDQKLFSRLEIVDHIKIHQNAEYFKCKICDKVSVTRSCLRQHIKDNHKKKNVECDICGKSLANASSLRTHKLMHEADNKNKIHCELCDKSYLCKHSLNIHMRLFHLKEHIICDLCGKSLRDSYRLKVHMLEHEGKPKSKVSCEVCGRILSDVPCLKRHMRSYHPPNGVNPEFNCPVCKKLFTSNANLKMHVRRVHESKYERKCTLCGKIFKRPAGLKDHMASHAGKPLRACTFCSRTFYSNGNMYAHRKRAHPIEWAESENLNNYSYICQTCWQELSNFHNFYLKIEKANSNINILVKSEVVSEDVLKDKGILAEQICIDSNENSEIPPKILFVKEESPLEIFDVEEESCLEAMNKQDTSVISKSEDKGDLAEQIFIVDKETSQIGSEILFLKEVNPLEMFEKEDVGEVSSLKNSTERKRPLRKSTNDKKNIAKNNTKKRLKKEKVTKPEDNKNRDEEIDIKLKEVENDTEENKIDEHLNDQKDSFVSDVDPSTNSVDSSKVEQEQDKFIAEHFQITCSLCDIPLATFDIMVKHNKEQHNQRGYATCCDQKLSSRLEIVDHIKLHQNPEYFNCKICDKILISRACLKKHIKYAHKEKNVECDICGKFLASEAGLKTHKLIHEPDNKNKIHCELCDKSYVSRDSLNTHMRFVHLKQHKICDLCGKSEKNNYRLKIHMLLRHSEKGRPTVSCEVCGRVLSDIGCLKRHMSSNHPPNGINPEFNCPVCNKIFTSNANLKTHVWRVHENKYERKCTLCGKIFKSSGSLKDHMSTHTGNPLRTCTFCPRTFNSNGNMYAHRKRAHPIEWEKSVREKMGGKLPDKSITKTIEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -