Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101441.1:3208434-3220815[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0039 0.41 12.4 1.0 2 23 96 118 95 118 0.94

2 27 0.00046 0.049 15.3 0.1 2 23 128 150 127 150 0.97

3 27 0.002 0.21 13.3 3.3 1 23 156 178 156 178 0.97

4 27 0.00022 0.024 16.2 0.7 1 23 184 206 184 206 0.95

5 27 0.022 2.4 9.9 0.2 3 23 214 234 213 234 0.98

6 27 0.0024 0.26 13.0 0.2 2 23 240 262 239 262 0.94

7 27 0.012 1.2 10.9 3.1 1 23 268 290 268 291 0.96

8 27 8 8.5e+02 1.9 3.5 1 23 371 394 371 394 0.96

9 27 0.0034 0.36 12.5 1.4 2 23 450 471 449 471 0.96

10 27 0.66 70 5.3 1.7 1 23 548 571 548 571 0.93

11 27 0.017 1.8 10.3 2.6 1 23 576 598 576 598 0.99

12 27 0.042 4.5 9.1 1.4 2 20 707 725 706 728 0.94

13 27 0.0039 0.41 12.4 0.8 3 23 802 823 800 823 0.95

14 27 0.13 14 7.6 1.3 1 21 830 854 830 855 0.94

15 27 0.2 22 6.9 0.2 2 23 867 889 867 889 0.95

16 27 0.00066 0.071 14.8 1.7 1 23 945 968 945 968 0.96

17 27 0.00029 0.031 15.9 1.1 1 23 974 996 974 996 0.98

18 27 0.23 25 6.8 1.1 1 21 1002 1022 1002 1023 0.93

19 27 0.0001 0.011 17.3 2.5 1 23 1039 1061 1039 1061 0.98

20 27 4.4e-06 0.00047 21.6 5.7 1 23 1067 1089 1067 1089 0.98

21 27 2.7e-05 0.0028 19.2 0.7 1 23 1095 1117 1095 1117 0.98

22 27 0.00074 0.079 14.6 1.5 1 23 1123 1147 1123 1147 0.92

23 27 0.00097 0.1 14.2 3.6 3 23 1176 1196 1175 1196 0.99

24 27 0.0011 0.12 14.0 7.8 1 23 1202 1224 1202 1224 0.98

25 27 6.9e-06 0.00073 21.0 4.6 1 23 1230 1252 1230 1252 0.98

26 27 3.3e-05 0.0035 18.9 0.3 1 23 1258 1280 1258 1280 0.99

27 27 0.00033 0.035 15.7 0.4 1 21 1286 1306 1286 1310 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0039	0.41	12.4	1.0	2	23	96	118	95	118	0.94
2	27	0.00046	0.049	15.3	0.1	2	23	128	150	127	150	0.97
3	27	0.002	0.21	13.3	3.3	1	23	156	178	156	178	0.97
4	27	0.00022	0.024	16.2	0.7	1	23	184	206	184	206	0.95
5	27	0.022	2.4	9.9	0.2	3	23	214	234	213	234	0.98
6	27	0.0024	0.26	13.0	0.2	2	23	240	262	239	262	0.94
7	27	0.012	1.2	10.9	3.1	1	23	268	290	268	291	0.96
8	27	8	8.5e+02	1.9	3.5	1	23	371	394	371	394	0.96
9	27	0.0034	0.36	12.5	1.4	2	23	450	471	449	471	0.96
10	27	0.66	70	5.3	1.7	1	23	548	571	548	571	0.93
11	27	0.017	1.8	10.3	2.6	1	23	576	598	576	598	0.99
12	27	0.042	4.5	9.1	1.4	2	20	707	725	706	728	0.94
13	27	0.0039	0.41	12.4	0.8	3	23	802	823	800	823	0.95
14	27	0.13	14	7.6	1.3	1	21	830	854	830	855	0.94
15	27	0.2	22	6.9	0.2	2	23	867	889	867	889	0.95
16	27	0.00066	0.071	14.8	1.7	1	23	945	968	945	968	0.96
17	27	0.00029	0.031	15.9	1.1	1	23	974	996	974	996	0.98
18	27	0.23	25	6.8	1.1	1	21	1002	1022	1002	1023	0.93
19	27	0.0001	0.011	17.3	2.5	1	23	1039	1061	1039	1061	0.98
20	27	4.4e-06	0.00047	21.6	5.7	1	23	1067	1089	1067	1089	0.98
21	27	2.7e-05	0.0028	19.2	0.7	1	23	1095	1117	1095	1117	0.98
22	27	0.00074	0.079	14.6	1.5	1	23	1123	1147	1123	1147	0.92
23	27	0.00097	0.1	14.2	3.6	3	23	1176	1196	1175	1196	0.99
24	27	0.0011	0.12	14.0	7.8	1	23	1202	1224	1202	1224	0.98
25	27	6.9e-06	0.00073	21.0	4.6	1	23	1230	1252	1230	1252	0.98
26	27	3.3e-05	0.0035	18.9	0.3	1	23	1258	1280	1258	1280	0.99
27	27	0.00033	0.035	15.7	0.4	1	21	1286	1306	1286	1310	0.92

Sequence Information

Coding Sequence: ATGTCTAGAGAATCACCCAGGCTCTTGCCAGGAATCGAACCAGAGGACCGCACACTACAATGGCATCCTGTCACtgcaAAAGCAAAATctggaaaaaaaacaacaaaacgtaATCGTGGCAAAAAAGTCAAACAATCAGGTGAAAGTGAAGAAATATTTCGTAGTCCTGTTAAGCGTTCGAAAAAATCTCAACAACCAAAGAAAACTGTAAAAACAGCGCACACTGACGAACTACtaaatgaaacgaaaaatattaatgaagaCGATGATGCAAAAGAAACGATTGTATGCGATAAATGCTCGCAAACGTTTCCCACTATTCACACATATCAAAGGCACCAACAAGCAGAACATTCTTCAGAATCAAACGAAGAGAAGAATAAATGTCCCATATGTTCAAAAGAATTTAGAAATAGTTGGTATGTAGTGGATCATATAAAAGTTGTTCACGATAAACTGAAGCCCTATAACTGTTCTCACTGTCCAAAAAGTTTTGCGTCAGCCCATTCCAAACGAATTCATGAACTTACGCACACGGATAATTTTCCATATGCTTGCGAATATTGCGACAGACGTTTTCGCCTTTCCAGCAAGTTAAAGATTCATTCAGAAATACACACAACTAAACCTGAACTTTTATGTCCCATCTGTAAAAGAAGCCAAAAATCGCAGGAAGAATTAGAAGTGCATGTAAAAAATCATGATGATAATCGTTTACAATGTCCTTCGTGCGGTAACCTATTTAGAAGAAATGCACAACTGAAAGATCATTATAATGCGGTTCACTTAAAACTGCGACCTTATAAATGTGAATTTTGTGAATTGGGTTTTGGGGATCGCAAGACGCGTCGTGTGCATCAAAGAACACATCATAAGCAAGAGCTTTCAATAACatCTCCAAATGTAAGTTTGGACGACGATTGCAACGATAGTGATTACGAAAATGAATCCAGGTCCTCGTCATCAAATGAAAGCGACAACGAAGCTCCATGCAGctcaTCATCGTTAAATGGCGGCGAAAAGGAAGGTACCTCCGGACAACCCTTACAACAACGGACAAGAGGTGGACCACATCCAGAAGATGATGTAATTGAacaattcaaaaattgttttcgttgcCTGTtatgcaagaaaaaattaactctACTGAGAAATTGTCGGCGCCATGTAGCTACTTTACACTTCCGAGAAATAAATGTGACTCGTAAATCTTCTGCAGAAAAAATTAACCAGAATTTACTAAAGAAACCTAATGAAATATATTCGGATAAGTTTATCTACACGAACACGCCAGATTTGTCATTTGGAGATCGCATATATAGTAAGCCAAGCACTTGGCGTCTTGTGGAATGTAAATTGTGTAATATAACGTTTGAATCATGTAAAGCACTTCGCCAACATTTAGAAAACCACGATGATATGGACACTCTTCACAGCTTAAAGCTATCGGATAACATTGTCCAGAATTTGTTTCCAAATATgatccatttaaaatttatcaaagaaAGTATATGTGGAGACATTCGTAAGAAACATTGGTTTAAATACTACACAGTTTTAAATCAATACTCTTATGAAATGTCAGTTAGTGATACAGAAGTAGATGAGCTGGAAGATGAAAATCCAGAGCGTGCTGGCAAGTATAAATGTGCATTCTGCGCTAAAGGGTTTGCATATAAGTACCACgtttttccacatttaaaaCAGGCCCATAGTGAGCAAGGATTCAAATGCGATCGATGTAAGTTGCAATTTGTttctataaaaatgtacaaGCAACACTTGCAAACACATTGCAATAACCAACATAAAACCTTACTCTGTGGAAATTGTCCGGGAAAATTCGTTTGGcccgaaaatataaaaaatcacatttGCCCCGCGGGCATCCCTGTGACCACAGCGGCCGGTCTTGACGATCGACTTGTATGCATTGTTATTGATAACAAGCTTGATCCAGAGAGAAGACAAACGAGCTCACCCGCCACTCTTGACGAACAACTTACTTGTAATGTTATTCTTCGCAAATCTGCAAATCAAAAATCTGCGCCCGATCTTCAAgatcaaattaaatataatgttAATGATCGTAAATATGATCCAGACATCATAACAATGCGTTGCGGTCTTTGTGAGCAATCCTTTCAGAAATTACGACATTTGCGGCAACACATGCCTTTGCATGCCGATGGCAAAACTGGTATTGACTTTCAGAATTGCATTTATGTAAAAGAATTTGGAAGTTCAATATCAATTGATATACTGGAGCAGCAGATCAAAAATGATTATAGAAAAGGccaaataagtaatttttaccAGGCTATCGATAAGTACGGCGATGAAATGGACATTTCGGATTCTGATTCGGATTCGGATACTGAAAACATAGAAAAAGAATACGGGTGCGAAGTTTgcaaagaaatgtttaaaaaacgaaaatatttactGTGGCATCAACAGGAACGACACAATAGCATGCAACTACCCTTTACTTGTCCTACATTTGCAAGAAATTGTGGAAAGCAATATGTCAGCATTCATTTGTTAcatcaacatttaaaaaaggaatGCTGGAATGTAAAGCGGAAGAAAGCTCCACAGTGTGAAATTTGTAATGATCGCTTCATATGGCCCAGCAATCTATTGAAACATAAGATAATGCAGCATGACATAACGAGGGAATCTTCAAACCTTCCCACTATTTCTTTTGTTGGGAGTGGGACCTCTGCAAGTGCTGTTGTAACAACACCACCAGCTTATAACGAGGCTGTGTcaacttcaaaatatttccaAACAGTCTGCCAGCAGCCTACACCAGCAACAGAAACGAAGTTCGTTTGTTCCTATTGTTATGTATCCTTTTCTAACAATTCAAAACTATTGCTCCATACGTTGAAACGACACACGGATGAAGAAACCTTCAAGTGTAGTTTTTGCGAAATGACATTTGTAAGGGCTACTGATTTGCAATCTCACAATCTAACGCACGCTGGCGAACTTCCTTTTAAATGTATGTTTTGCGAGAAATCATTTCTTCAGGAAGTTCAATTAAATTCTCACAAAAACTATTGTGAATCAATGGGTCACACCGAAACGCACGTAAATGACAAACATCACAAGTGTGAGTTTTGCGAAATGGCGTTCATAAGTGAAAGTTATTTACAGAATCACCGTCGTACACACATTAAAGAATGTCCACATAAATGTCAGCATTGCGAAAAATCATTTCCGActaaagataaattaaaagagCATATCCGAACACACACCGGCGAACGTCCTTATCAATGCACGTTTTGTAGTAAAGCTTTCAATGTTTCGGGACAGTTAAAGTTACATATGAGTATTCATACCGGCGAGAAGCCCTTTCAGTGTGACATTTGTTGCAAAACGTTTGCACGGAGCGCGTATCTAAAAGCGCATCGTGAAACAATGGGTCACAACGATTTATGGTCAACTCCAGACAATATTTCCAATTCAGAAGGTTTAGAAAATATGGCAACGagtaaaagcaaaagaaatctTTGTCCTATTTGCGGAATCCACTTGTCGAGGACAACAAGTTTTACACATCACATGAGAACGCACACGGGTGACAGACCTCACAAGTGTGAATTTTGCGAAAAGGGGTTTATAAGTAGAACTCACTTACGGCATCACCGTCGCATACATACAAAAGAACGTCCCCATAAATGCCCGCATTGCCAAAAATCATTTCCGACAAAACAGAGATTAATAAAGCATATCCGAATACACACCGGTGAACGCCCTTATCGATGCACGTTTTGTAGTAAAGCATTCAATGTTCCGGAAGCTTTGAAGTTACATTTGCGTATTCACACTGGCGAGAAGCCGTTTAAGTGTAATGTTTGTAATCAAGCTTATGCAAATAAcgcatatctcaaaaaacatcgTATCGCAAAAGGACATGTcgtcgaaaaaaaaataatttaa
Protein Sequence: MSRESPRLLPGIEPEDRTLQWHPVTAKAKSGKKTTKRNRGKKVKQSGESEEIFRSPVKRSKKSQQPKKTVKTAHTDELLNETKNINEDDDAKETIVCDKCSQTFPTIHTYQRHQQAEHSSESNEEKNKCPICSKEFRNSWYVVDHIKVVHDKLKPYNCSHCPKSFASAHSKRIHELTHTDNFPYACEYCDRRFRLSSKLKIHSEIHTTKPELLCPICKRSQKSQEELEVHVKNHDDNRLQCPSCGNLFRRNAQLKDHYNAVHLKLRPYKCEFCELGFGDRKTRRVHQRTHHKQELSITSPNVSLDDDCNDSDYENESRSSSSNESDNEAPCSSSSLNGGEKEGTSGQPLQQRTRGGPHPEDDVIEQFKNCFRCLLCKKKLTLLRNCRRHVATLHFREINVTRKSSAEKINQNLLKKPNEIYSDKFIYTNTPDLSFGDRIYSKPSTWRLVECKLCNITFESCKALRQHLENHDDMDTLHSLKLSDNIVQNLFPNMIHLKFIKESICGDIRKKHWFKYYTVLNQYSYEMSVSDTEVDELEDENPERAGKYKCAFCAKGFAYKYHVFPHLKQAHSEQGFKCDRCKLQFVSIKMYKQHLQTHCNNQHKTLLCGNCPGKFVWPENIKNHICPAGIPVTTAAGLDDRLVCIVIDNKLDPERRQTSSPATLDEQLTCNVILRKSANQKSAPDLQDQIKYNVNDRKYDPDIITMRCGLCEQSFQKLRHLRQHMPLHADGKTGIDFQNCIYVKEFGSSISIDILEQQIKNDYRKGQISNFYQAIDKYGDEMDISDSDSDSDTENIEKEYGCEVCKEMFKKRKYLLWHQQERHNSMQLPFTCPTFARNCGKQYVSIHLLHQHLKKECWNVKRKKAPQCEICNDRFIWPSNLLKHKIMQHDITRESSNLPTISFVGSGTSASAVVTTPPAYNEAVSTSKYFQTVCQQPTPATETKFVCSYCYVSFSNNSKLLLHTLKRHTDEETFKCSFCEMTFVRATDLQSHNLTHAGELPFKCMFCEKSFLQEVQLNSHKNYCESMGHTETHVNDKHHKCEFCEMAFISESYLQNHRRTHIKECPHKCQHCEKSFPTKDKLKEHIRTHTGERPYQCTFCSKAFNVSGQLKLHMSIHTGEKPFQCDICCKTFARSAYLKAHRETMGHNDLWSTPDNISNSEGLENMATSKSKRNLCPICGIHLSRTTSFTHHMRTHTGDRPHKCEFCEKGFISRTHLRHHRRIHTKERPHKCPHCQKSFPTKQRLIKHIRIHTGERPYRCTFCSKAFNVPEALKLHLRIHTGEKPFKCNVCNQAYANNAYLKKHRIAKGHVVEKKII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -