Gvir029703.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- grau
- Assembly
- GCA_956483585.1
- Location
- OY101443.1:67834954-67844167[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.044 37 5.6 1.1 17 43 299 322 289 323 0.81 2 8 0.00014 0.12 13.6 0.5 14 38 324 345 321 345 0.87 3 8 0.86 7.2e+02 1.5 0.6 16 39 356 376 351 382 0.74 4 8 0.28 2.3e+02 3.0 0.9 14 27 382 395 374 399 0.79 5 8 1.9e-07 0.00016 22.8 0.9 6 44 403 439 399 439 0.89 6 8 0.00012 0.097 13.9 0.8 19 43 449 470 446 471 0.92 7 8 0.28 2.3e+02 3.1 0.6 15 28 474 487 471 496 0.82 8 8 0.16 1.3e+02 3.9 0.4 19 44 506 528 504 528 0.89
Sequence Information
- Coding Sequence
- ATGGATTGCTTATTGTGTttgaatataaatgaaaatggtCAAGATTCGATAATTTATAATTCTATCAAATGGCAGGAACTAAATATACAATACGTCGTTGAAAAATATCTTTGGAAACTGGAACATTTGACAAATAGTTCCAATATATGTCAATCATGTTGGCAGGAATTATataatttccacaatttttacttgaaaatcGAAAAAgcccatacaaatttaaatattttaataaaatcagaaGTAGTGTCTAATGATGTTTCTAGCGAAGAAAAGGACAAGCCTGAAAACAATTTTGGTGATAGCGAAGAAAATTCTCAACTTGAACCtgagattttattattaaaggtgGAAAATCCAttggaaatttttgaaaacgatGTAGAGGAagtaattagtttaaaaaatactgCTAAACGTAAACGTCCTTTAAGGAAAAATAGAAACGTTAAGAAAcatatcgaaaaaaattattcgaaaaaaagatttaaaaatgagAAAGGCAATTCTGAAACAACCAAACCGGAAGCCGATAAAAATCGGAATgaaattgacataaaattggAAGAACTAGAAAATGACTCTAAAGAAACAAAGCTTGATGAAAATTTCAACGATCAGAATAATACTTCTGAAAGTGATGGTGATCCTTCGGCAAATGATAATGATTCATCCAACTTAGAGCAATTACGACAAAAACGGGATAAATTTATAGctgaaaatttacaaatcacCTGTTCTCTTTGTCAAATTCCATTGGGTACATTTGCATTATTGACTCAGCATTACAAAGAGGAACACAATCAACGTGGATATACAATTTGTTGTGATCAAAAACTTTATGCTCGTACAGAAATAGTGGATcatattaaattacacaaaaatcctgaatattttaaatgtaaatactgTGATAAAATCCCATCTAGCCGTACACTGCTGAAGctacatattaaaaatgttcatgaaCAGAAAAATGTTGAATGTGACATTTGCGGTAAAATATTATCAAGTGAAACGACTCTGAAACGGCATAAATTACTGCATGATGCTgataatgttgaaaaaataccCTGCAAACAGTGTGATAAGTCGTATCTCTCTAAAGAATCCTTAAACAATCACATACGCCTCGTTCACTTAAAGAAACACATAATTTGCGACCTATGTGGTAAATCTCTAAAGGACAATTACACATTCAAACTTCACATGTTAGAGCATGAAGGAAAGGAGAAATCAAAAGTAAGTTGTGAAGTTTGCGGGCGCATTTTATCCGACGTGCCATGTTTAAAGCGACACATGCGCTCTAATCATCCTCCGAATGGAGTTAAACCTGAATTGAATTGTCCAGTGTGCAcgaaaatatttacaagtaCATCTAATCTTAAAACGCACATAAAGAGTGTACACGAAAATAAATACGTAAGAAAGTGTACTTTGTGtgagaaaacatttaaaaaacctGGCGCTCTCAagGATCATATGGCTAATCATGCTGGCAACCCTTTACGCGCTTGTGGTTTTTGTCCTAAGACATTTTATTCAAGTGGTAATATGCATGCCCACCGCAAACGAGCACATCCAATAGAATGGCAGGAATCTATAAGAGAAAAATTTTCTGGAAATTTACCAGAAAACTATGCTACAAAAacaatgtaa
- Protein Sequence
- MDCLLCLNINENGQDSIIYNSIKWQELNIQYVVEKYLWKLEHLTNSSNICQSCWQELYNFHNFYLKIEKAHTNLNILIKSEVVSNDVSSEEKDKPENNFGDSEENSQLEPEILLLKVENPLEIFENDVEEVISLKNTAKRKRPLRKNRNVKKHIEKNYSKKRFKNEKGNSETTKPEADKNRNEIDIKLEELENDSKETKLDENFNDQNNTSESDGDPSANDNDSSNLEQLRQKRDKFIAENLQITCSLCQIPLGTFALLTQHYKEEHNQRGYTICCDQKLYARTEIVDHIKLHKNPEYFKCKYCDKIPSSRTLLKLHIKNVHEQKNVECDICGKILSSETTLKRHKLLHDADNVEKIPCKQCDKSYLSKESLNNHIRLVHLKKHIICDLCGKSLKDNYTFKLHMLEHEGKEKSKVSCEVCGRILSDVPCLKRHMRSNHPPNGVKPELNCPVCTKIFTSTSNLKTHIKSVHENKYVRKCTLCEKTFKKPGALKDHMANHAGNPLRACGFCPKTFYSSGNMHAHRKRAHPIEWQESIREKFSGNLPENYATKTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00760372;
- 90% Identity
- iTF_00760372;
- 80% Identity
- iTF_00760372;