Gvir022688.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101442.1:92891958-92893820[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-07 0.00028 21.7 0.0 8 39 400 431 398 435 0.86 2 4 4.2e-14 9.7e-11 42.4 0.0 5 44 451 490 448 491 0.93 3 4 0.021 48 4.9 0.0 27 38 520 531 516 537 0.88 4 4 1.1e-14 2.5e-11 44.2 0.0 4 41 559 596 559 598 0.92
Sequence Information
- Coding Sequence
- ATGAACCATTTAAGGTGGATGGGCCATTCGGCCACAATATTGGATATACATAAAAATCTACGAGCAGATTTGAAGAGCTGTGAAGTGACATTGGTAGCCAAGGGACATTGCGTTAAAGCCCATCGTTTCGTTTTATCATCTTGCAGTGACTTGCTACGATGTCTTCTAACTGATGTTCCCATTGGGCAGGAATGTTGCCTTATGATTCCCGACATTAAGGGTCATTTGCTGGATAATGTTTtagcttttatatatttaggaGAATGTTCTTTATCCTCCACAAACTTGTCCGAGTTTTTAGAAGCCATTAATGTATTGGGCATTAAAAGTGCCATCAGTTTCGAGTGTAATACAAATGCTTTACAGACAGCTCAAAGTAGTAGTCATAGCACCATCGCTATAGATAGCAATACAACTATGGCGCCAGTTAGTAATGCATTGTCAAACTCGCAGGTTACAGTTGCAGTTGCAGCCGATTCATTTAATCAGGAGGAAATAATAGAAACGCAAAATGTAATCCATAACGAGCCTCATACTGAAGCTGTTGGTAGTGTAAATAATTCTAGTGGAACTAGAGAACTCGATtttttagatgtatataatgaACCTCAACACAAAATAACATATTCAATAGAACATGTTCCAGGGTCTTCAGCTggcaatgaatttattttaactgaaaactCTGGCACTTTCACTCTAACCCATAGTGGTAAATTGGAATCGAGTACATCTCCGACGGAATCGACGAATATGGAAGTTACGGAGGATGACGGTTGTGAAGCACATATTATAGAAGAATACAGCAGCAGCGATGAACCTTTAATACATATAGGTGAAACCGGACAAGACCAACAAACTATAACAGTAGCTCAATCTTTAACACAACAGCACACAACACAACAGCACACAACACCACTTGTTTCAGCACCTGCAAATGCAACTTCTATTATACAAGTAAAGCCAAAATTGAAAAcccttaaaataaaacatcaccAGGGTTCTCAAAGGATAGTAACCAAAATGGATCAACTTTCGGAAGATACAGGGAGTGATGATCCTATATCAATATTACAAACATCAAATGAAAGCTTTACCTTGCTTAAAGATGCTTCCATAATATCTACAAGTAACACTAGTCACGAAGAGTCGACAGATTTTTCTGTGAACAACTCGGACATATCTGCAACCGAATTGGCATATCAAGCTATGGTCAATGAGGGGATGTCTTTGCCAAAGGCCGCTGACAAATTTAATGTGTCCAAAGCAGAACTGTGGCGGCGAGTGCGTAGTACCGGTGTTGAGCAGATCAACAAGTCAGTTAAACTCGATCCTGACAAGATTGACGTTATTGAACTAGCTAGTAAGGCAGTAATAAACGAGGGCTTATCACTTCAAAAGGCCGCCATACGTTACGACATCTCTAAAACAGTGCTCTGGCGTAGGGTTCGCAAACATCCGCAATATATGAAAACAGCGCGTGAAAATCCGATAATAACTAAGGCATATGAGCGCCTAAAATCTGGGGAATCCCTTAAAAGCATATCACAAGATTTAGATATACCCATGTCTACTTTGCACCGACATAAAGTGCGTCTCTCCCAAACTGGTCAGTTGCCCGACTTTGTTACATGTAAAAAACGTGATAGCATGTCTAAAGATgatcttaaattaaaactatctAAAGCGGTACATGCCTGCGTACACGAAGGGATGTCACAAAATCATGCTGCTAATTTATTCCAAATTTCCAAAAGTACATTGTGGCGACATCTGCAAAAACGAGTGGCTGAAGCTGAAGCAGCAGAGACCGAATCTATGGACGATGAGGACGAAATTAAACAAGAAGTCATTCTTTCATAA
- Protein Sequence
- MNHLRWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCLMIPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNALQTAQSSSHSTIAIDSNTTMAPVSNALSNSQVTVAVAADSFNQEEIIETQNVIHNEPHTEAVGSVNNSSGTRELDFLDVYNEPQHKITYSIEHVPGSSAGNEFILTENSGTFTLTHSGKLESSTSPTESTNMEVTEDDGCEAHIIEEYSSSDEPLIHIGETGQDQQTITVAQSLTQQHTTQQHTTPLVSAPANATSIIQVKPKLKTLKIKHHQGSQRIVTKMDQLSEDTGSDDPISILQTSNESFTLLKDASIISTSNTSHEESTDFSVNNSDISATELAYQAMVNEGMSLPKAADKFNVSKAELWRRVRSTGVEQINKSVKLDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMDDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00760243;
- 80% Identity
- iTF_00760243;