Basic Information

Gene Symbol
stc
Assembly
GCA_017312745.1
Location
Scaffold68:4678294-4702375[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.13 1.9e+03 -0.4 0.4 4 10 949 955 948 955 0.96
2 12 2.1e-07 0.003 18.2 13.3 4 18 971 985 969 986 0.93
3 12 9.6e-05 1.4 9.7 9.5 4 18 1025 1039 1022 1040 0.91
4 12 1.3 1.8e+04 -3.5 1.2 6 10 1070 1074 1069 1074 0.90
5 12 4.8e-09 6.8e-05 23.4 10.5 1 18 1080 1097 1080 1098 0.97
6 12 6.4e-06 0.091 13.5 15.4 3 19 1146 1162 1140 1162 0.84
7 12 0.02 2.9e+02 2.3 13.2 1 11 1202 1212 1202 1224 0.82
8 12 7.4e-10 1.1e-05 26.0 15.1 1 19 1229 1247 1229 1247 0.98
9 12 1.1 1.5e+04 -3.2 0.5 6 10 1276 1280 1275 1282 0.82
10 12 2 2.9e+04 -6.7 9.2 9 18 1293 1303 1283 1304 0.83
11 12 2.9e-06 0.041 14.6 12.8 1 15 1340 1354 1340 1366 0.94
12 12 9.6e-06 0.14 12.9 15.2 1 19 1373 1392 1373 1392 0.97

Sequence Information

Coding Sequence
ATGGTTAGGTTCTTTTCACGTGAATTAAAATATACACTCCACAATTTCTTCTTGCGCGATCTGTCGTCACTAGCCTTCTACTGCAGTGAATTGGATGGATTTTGTAAATTGTGGGTGGATTGTTTGGGCCGTGAATTTTACAGGCCTTTAAGGAAACAAGAAATGGACTGGAATAACTTTTTTATGTCTGGCACCAACCAGAATTACAATTTTGTGCCAGGAGCATATCCTCCTAGTGGTGGTGGTGGTGGTAGTGGTGCAGTGTATCAAAATGGCCAACAAAATTGGCAATATTATCCATCCTACAATCAAAACTACATATCAGAACCTTCAACTTTGCAACCTATTGTATCTCCTCTTGTATCGTCATCTCCATATGGGGGAGTTTTTTCCCACCCCTCTGGGGAGTATCAAGAAGGTAATATGGGATCTGGTATAGTTTCATCATTCCAAAGGAGTGGAATGAGGGTAAATGAAAGTCTCAACACACCAGCAGATGCACTTGCTTCAATTTTATCTGCATCTTCTTTGACACCTACAGCTGGAGAATTTATTCCCCGTTCTAAAAATGTTCAAAAGGTGGAGGAACAAGCAAGTTTTGTAAGTGCATCGTATAATAATTTTAATAATTCTATACCTCAACACCAGCACCAACTGGATCTGCCCAGAGTTGATGGTGAAAGCGTTAGGAATGTAGCAGGAGTTAATTCCAATAATTTTGAGGCTGATAATAATAGTAATGTCAACAAATCTAAAGCTGTTCATTCATCTAATAGTAAAAGCATACATCAGAGGAAAGATAAAGACATACCTAATTCAGAAACTGTGGACCACATTAAGGAAATAGGTGACCGTAGTATAGGAAACAAAGGAACACCCTACCATGCTGCTAATAGCCAAAATGCTTCACCAAATTCTGCAAATATTAAACCAAATGTCCAATCAATTTCAAATGAAGATAATGAAAAAGTATCTGGTGCTGTAGGTGAACCAAAGAACCATCGTCAAAATAACAGGCAAACGCTTGATACGTCTGTGAGAAAAGGCAGTGGAAGAATACTTCAAAATAGAATGGGTGACGGTGTGAGAGTATCCAATGTACGCGATTCTAAGAATCAAGGACGCCAACAATTGCTTGCAGAAGCTGCCACTTATTATTCATCTAGGTTTGTGGAAAATAGGCAAGGGGATGGAGCAAATTCAAGTTACTATGGCCATAAGTCTTTTGATTGGAAAGCACACCGTGAAGGAAGAAACTCAAATTCTGAAGCAAATCCTTTTATAGGAAAAAATAATAGCCAAACAGGTAATAAAAGAGAGAGAATCTCACAGGAGAATGAGAACTCTTGTGAAGATAATGCTCCAGAAAAAGAAATGAAAGGTAATGGAGGACAATGTCAATACCATCAGAATGGCAGTAACAAAAGTGACAGAGGAGACCAAAACGATAGAAGAGATAGAAATGACAGAAGAGAGAAAGGTGACAAAGTTGAAAGAGAAGATAAAATTGTCCGAGGAAATCGAAATGACAGAGGAGATCGAAATGACAGAGGAGACCGAAATGACAGAGGAGACCGAAATGACAGAGGAGACCGAAATGACAGAGGAGACCGAAAAGACAGGGGTAACAGAAATGACAGGGAAGACAGGAATGACAGGAGTAACAGAAATGACAGGGAAGACAGGAATGACAGGGGTAACAGAAATGATAGGGAAGACAGGAATGACAAGGGGGACAGAAATGACAGGGGTGACAGGAACGACCGAGATGGCAACAACAGGGGAAGTAGAAATGACTGGGGAGATAGATTCAACAGAGGAGATAGAAATGAAAGAGGAGGAAAATTTGATAAAAGAGAGAAAAATGAAGGAAGGGAGAGAAGTGATAGAGGGGAGAGAATGGACAAAGGAGAACGAAATAATAGAGAGAGACGTGGTGAAGTAACTGAATGGAATGATAGAGGAAAAAAATGGGATAGAAGTGAAAGAAGGGATAGAAATGATAATGGTGACATGAGTGAAAGAGGAGAAAGTTGGGGCGAAAGAGGAATTAGGAGTGATAGAGAAATCAGAAATAACCAAAGTGGAAGAATTGGGAGGCAAGAAGGAGCAGAAAGAAGTGATAGAAATGATTCAGGGAGATACCAGAAAACCTTTTACAGTAGCAGGTTCAATTCTAGAAATAGCAATGCATCACCAAGTGGGCGAGACATTCCTTTAGATAGTAGTTCGTCATATTTTCAGAACAGAGCAAAATGGCAGGGTTCCAGTCAGTCATCAAATGATCAACAAATGGAAAATGAAAATGTTTTTTCTGATAGATATGAGGCCAATTCAGGGTACAAATGTGGATCCTATGTACCTGGTGAATCCACCTGGAATGGTGGTAATTCATCCTATAAAAATGAAAACAATGGGGCACAGAATTCACCCAGAAATTACAGTGAAGAGAAAACTCTGGCAGTGTCTCACGATGACATAAGAAGAAACGGAAAGTTTTCTCAAAATATGGGAATGAGAGTAAAGAAATCATACTATGGCCAGCCGCAATATGCAGATGATGAAGCTAGCCAACGAGAAAGTCTCAGTGACCAGCTCTCACGTGGTGCACTAGAGTGCCTGGTGTGTTGTGAACGTGTACGACAAAATGATTCAGTTTGGAGTTGCCGGAATTGCTACCATGTTCTGCATCTACGTTGCATCAAAAAGTGGGCCAGGTCTTCCAAAGCTGAGTCAGGGTGGCGTTGCCCAGCATGTCAGAATGTGTCTTCAAAGATGCCACAAGAATATCTCTGCTTTTGTGGGAAAATGCAGGATCCAGAATGGAACCGTCAGGACTTGCCACATTCCTGTGGGGAGGTCTGTGGGCGAACACGTGCTGCCAGAGCGCCTGAACTGGGCCCATGTGTTCACAGATGCACACTTTTGTGTCATCCTGGTCCTTGCCCTCCCTGTTTAGCTCAAGTGAACAGGGAGTGTGGTTGTGGAAAAACCTCCCAGATTGTCAGCTGTGGCAGTTCTCAACCTCTGCTGTGTGAAGCCACTTGTGACAAACTACTTAACTGTAAAGCGCATCGCTGCACCAAAGCCTGTCACTGGGGAGCTTGTGGAGACTGTGAGGTTGTTATCAAACAAGATTGCTTTTGTGCAAAGAACTCACAAGAAGTACCCTGCACTGAAGGAACTGCAGATGTGAAGAACTATTCTTGCAAAGAAGTGTGTGATAAAAAGTTAGCCTGTGGAAATCATAATTGTACTCTGATATGTCATGATGGTGATTGCGTTCCTTGTGAACTTACGCCGAGCAGAGTTACTCGTTGTCCATGTGGTAAGACAGCTCTGGGAGAGGACTGCAAGCGAGTGAGTTGTCTAGATCCTGTACCCACTTGTGGGCAGATATGTGAAAAGCAGTTGTCTTGTGGACAGCCTGGAAACTATCATCAGTGTCAAGCAGAATGTCATACAGGGCCTTGCCCTCAGTGTCCGCTTATAACATTTGTCAAGTGCCGTTGTGGTCACATGGACCGTGAAATTGAATGTAAAGACCTCAAAACCAAGGCTGATGATGCTCGATGTGAGAAACGGTGCTCGAAGAAACGTGCCTGTGGTAAACATAAATGCAATCAGACTTGTTGCATAGATGTTGATCACCGGTGCCCGCTTCCCTGTAACCACACTTTGAGCTGTGGTCAGCATCGTTGTGAAGAATTGTGCCATCGTGGGCATTGCCAGCCATGTTGGCGTACTAGTTTTGAAGAATTATTCTGCGAGTGTGGGGCTAGTGTTATCTTTCCTCCAGTGCCCTGTGGCACACGACGACCAGCCTGCAATCAGCCGTGTAGTCGACAACATCCTTGTGACCACGAAGCCCTGCACAAATGCCATTCGGAATCCACATGCCCTCCATGTGCTGTGCTCACAGAGAAATACTGCTATGGAAAGCATGAACTACGGAAAGCTGTGCCTTGTCATCAGACAGAATTCTCATGCGGTATGCCGTGTGGACTTCCTCTTCCTTGCGGTCGCCACACATGTATTTCTGCATGTCACAAGGGTTCTTGTGTACGAGAAGGCCAACCTGTATGCACTCAGCCATGCAAGACCACTCGCACGTTATGTGGGCATCCCTGTGCTGCCCCTTGTCATGAGGGCGCCTGTCCTGATACACCATGTAAAGAAACGGTTCGTGTAACTTGCGTGTGTGGCCATCGGTCTACAACCCGGCCTTGTTGTGACCAAATAAAAGAGTACAGACGTGTTATGACAGCCCTTCTAGCTTCAAGGATGCAGGATGTACAGTTGGGTCATTCTGTGGACATTGACGATCTTGGAGGTCCCTCTGCCCGTGTTGATAGTCTCAAAACGTTGGAATGTAATGATGAATGTAAGATCATTGAACGCAACAGAAGATTAGCTATTGGTCTACAGATTCGTAATCCAGATTTAAGTAGTAAATTGCAGCCTCGGTATTCAGATTTTATGCGTCAGTGGGGCAAGAAAGATCCGTTTTTTGTATCTATGGTTCATGATAAACTCACTGAACTGGTGCAGCTGGCAAAGCAGTCTAAACAAAAAAGCCGTAGTTACTCCTTCAGCTCAATGAATCGGGATAAAAGGCATTTTATTCATGAATATTGTGAACATTTTGGCTGTGAATCCCAGGCATATGACCCAGAACCAAATCGCAATGTAGTTGCAACTGCTCAACGGGACAGGGCCTGGCTTCCTAGTATGAGTCTACTAGAAGTCTTGCAGAGAGAGAGTGGTCAACGGAAAGTGCCCAAACCTGTAACTGCTCGAGCCCTTGATTCAAAGTTAAAAGAATTACCTCTTGGCCAGTCAACATCACAGGAAAAATCTGGTGAAGGGAGTAGCAAAACTGAGAAGGAAAAAGAGAAAGAAAAGGAAGTGGAGATAGATTACTTTGAAAATAATCTATAA
Protein Sequence
MVRFFSRELKYTLHNFFLRDLSSLAFYCSELDGFCKLWVDCLGREFYRPLRKQEMDWNNFFMSGTNQNYNFVPGAYPPSGGGGGSGAVYQNGQQNWQYYPSYNQNYISEPSTLQPIVSPLVSSSPYGGVFSHPSGEYQEGNMGSGIVSSFQRSGMRVNESLNTPADALASILSASSLTPTAGEFIPRSKNVQKVEEQASFVSASYNNFNNSIPQHQHQLDLPRVDGESVRNVAGVNSNNFEADNNSNVNKSKAVHSSNSKSIHQRKDKDIPNSETVDHIKEIGDRSIGNKGTPYHAANSQNASPNSANIKPNVQSISNEDNEKVSGAVGEPKNHRQNNRQTLDTSVRKGSGRILQNRMGDGVRVSNVRDSKNQGRQQLLAEAATYYSSRFVENRQGDGANSSYYGHKSFDWKAHREGRNSNSEANPFIGKNNSQTGNKRERISQENENSCEDNAPEKEMKGNGGQCQYHQNGSNKSDRGDQNDRRDRNDRREKGDKVEREDKIVRGNRNDRGDRNDRGDRNDRGDRNDRGDRNDRGDRKDRGNRNDREDRNDRSNRNDREDRNDRGNRNDREDRNDKGDRNDRGDRNDRDGNNRGSRNDWGDRFNRGDRNERGGKFDKREKNEGRERSDRGERMDKGERNNRERRGEVTEWNDRGKKWDRSERRDRNDNGDMSERGESWGERGIRSDREIRNNQSGRIGRQEGAERSDRNDSGRYQKTFYSSRFNSRNSNASPSGRDIPLDSSSSYFQNRAKWQGSSQSSNDQQMENENVFSDRYEANSGYKCGSYVPGESTWNGGNSSYKNENNGAQNSPRNYSEEKTLAVSHDDIRRNGKFSQNMGMRVKKSYYGQPQYADDEASQRESLSDQLSRGALECLVCCERVRQNDSVWSCRNCYHVLHLRCIKKWARSSKAESGWRCPACQNVSSKMPQEYLCFCGKMQDPEWNRQDLPHSCGEVCGRTRAARAPELGPCVHRCTLLCHPGPCPPCLAQVNRECGCGKTSQIVSCGSSQPLLCEATCDKLLNCKAHRCTKACHWGACGDCEVVIKQDCFCAKNSQEVPCTEGTADVKNYSCKEVCDKKLACGNHNCTLICHDGDCVPCELTPSRVTRCPCGKTALGEDCKRVSCLDPVPTCGQICEKQLSCGQPGNYHQCQAECHTGPCPQCPLITFVKCRCGHMDREIECKDLKTKADDARCEKRCSKKRACGKHKCNQTCCIDVDHRCPLPCNHTLSCGQHRCEELCHRGHCQPCWRTSFEELFCECGASVIFPPVPCGTRRPACNQPCSRQHPCDHEALHKCHSESTCPPCAVLTEKYCYGKHELRKAVPCHQTEFSCGMPCGLPLPCGRHTCISACHKGSCVREGQPVCTQPCKTTRTLCGHPCAAPCHEGACPDTPCKETVRVTCVCGHRSTTRPCCDQIKEYRRVMTALLASRMQDVQLGHSVDIDDLGGPSARVDSLKTLECNDECKIIERNRRLAIGLQIRNPDLSSKLQPRYSDFMRQWGKKDPFFVSMVHDKLTELVQLAKQSKQKSRSYSFSSMNRDKRHFIHEYCEHFGCESQAYDPEPNRNVVATAQRDRAWLPSMSLLEVLQRESGQRKVPKPVTARALDSKLKELPLGQSTSQEKSGEGSSKTEKEKEKEKEVEIDYFENNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-