GBI_16315-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold187:2122010-2150311[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.016 0.92 10.7 0.8 1 23 293 316 293 316 0.98 2 9 1.1 62 5.0 0.1 1 20 424 445 424 446 0.95 3 9 5.5 3.3e+02 2.7 1.8 1 15 457 471 457 478 0.86 4 9 0.56 33 5.9 0.1 2 23 488 510 487 510 0.89 5 9 2.3e-06 0.00013 22.8 0.7 1 23 516 538 516 538 0.97 6 9 0.0012 0.072 14.2 2.8 2 23 554 576 553 576 0.95 7 9 0.00051 0.03 15.4 0.6 1 23 582 604 582 604 0.98 8 9 0.0013 0.079 14.1 3.2 1 23 610 632 610 632 0.98 9 9 0.00098 0.058 14.5 2.2 1 23 638 661 638 661 0.97
Sequence Information
- Coding Sequence
- ATGTCTCAAGCATTACTTGCTTACACATTACCAAATGGAGCACAAGTTTTGATTCCAACACTGGATGCAAAAGGGGATCCTCTCTTTGAAGCAAATAGTGCTGCTAGTATATTTTTATCTGGAATGCAAGTGGAAAGTGATGATTTAGATAATGTTGTGGATTCTGCATGCAGTTCAGAAACGAATGAAATTCAAGATAACCTTAATACAAACAGTTTTGGCAATTCCTATCCCGATAAACAAGACATTTTTGGTGGAACTGTAATTGTCAATTCAGAACTAAGTGAATTTGTTGAAATGCACAGATCAAAGAACGACATGAAAGATTGTGATATCAACATTAAAAATTTTAGTGAAGAAAGGATATCTAAGAGTGATCATATTTGTAATGTTAAAAATTATGATCTTGTACAGTCTAACTGTCTCGGTTCATCCTGTGATACAATTAAAGTAGAGGAAGTAGTTACTCTTCAAGAAATGTTGGACACGTGTGAAACGGCTGGAATTGTAATTAAAAATACGAATGGTGATAGCTCCCAGTTGGGGCTAGATGTTAATTGTGATAATGGTAATTGTGATAGTAATATTGTAAAAGACAATGTCTCTTTGAAATCCGGTATCAAATTAGCTGTTGAAGATGTGAAAAATGCTATTAATATAAGTGATTACATGGATATTAGAGACAAAAATGCTTCAGAAGAATTAGTTCAGTTACCTGACACGGTTGTCCAAACAGCAGATTCTGTTCTGAAAGAAGTGTGTGACAATGTTACACAATGTTTAGAAAATGAAAGTCTAAAGAGTAGAGAGTTTACAGGACACACTAACAGTATGATTTTGGATCATTTAGATGAATTTGCTGAAATGGTAACATTGTTCAAATGCAGATTATGTAAATTTGCTGCTGGGAACAAAGAAGAATTGTTCAAACACTTGCAGACAGAGCACTTGGAGGGGCCATGTGATTCAGATCAGTGTAACTTGGAAGATAATGTGAACTCCGCCCCTCGAAATGGAGATATTGTGAGTGAAAAGCTGGTATTTTTGTGTGGTCAATGCAGTGCAGGATTTAATAGCATTAATGCCTGCAAATCTCATATGATGCAGGTCCATGAACTGATCGTTCAAGAGAGTGAAGAACCTGGTAATAGCTCACATTCAGAAAATGGTGATGTTGGAACATCTGATATTAAAGATTACATCCCAGTTTCATCCATTAATGCAAAAGATTTCTGCTTTAACCAGAAGTATCCTACAATTCCTACACCATACAAATGTGCGGTTCGTGGGTGTCAAAGCAAATTTAGTGAAGAGAAGGATCTTCAAATTCATGTTGGTTGCCATACTGATACTGAAAACTGTCGGGATTTTCGGTGCTGCGAATGTCAAGCCCCCTTTGAACGTTGGCGGTCATGTGCTATGCATCTGTGGAAAGTTCATAATATTGACTGCGGTCTTCTTACTTGTCCTATTTGTTTAAAATATAAGACTGCTACATCAGTTCCTTTGGAAAACCACATGAGAATTCATGGAGAAGCTCGGTCTTTCACCTGTCCTGAATGTGGCAAAGGATTCAAACAAGCTGCTCAACTTCATAACCATCGTGTTATGCATTTGGATCGCAAAACCAGTGAACTACCGCGCTGGTATGCATCTAAGCAGTGTAACATCTGTTTTAAAAATTACGCCAATTCAAAATGCCTGAAGAAACATATTCAAGCTGTACACAGTAAATTGCGACCATACGTATGTCAGGTATGTGGTCATGCATCTGCTCGCAAAGCAATGTTGCAATTGCATTATCGGCAGCACACTGGAGAGAAGCCGCATACTTGTCCCCTTTGTGATTATCGCACTGGTGACCATAACTCACTGAGGCGGCATATCATGCGCCACACTGGCCAACGTCCTTACCGATGCCCTCACTGCCCATACAGTGCAATACAAAGCAACTCCTACAAAAACCATTTGCGTAATAAGCATCCTGGGCAGAGTGGAGTTTTCTCATGCGGTCAGTGTTCATTTAAGACTGTAAGTCATGAAGGCTATTTACTTCACGTAGCAGATCACAAAAATGGCATTATCAACACTTGCAGTGATGGTGGAGGAAGTGATGTTGAGGTATTCCCAGGCAATGTTGCTGCTGCCCAGCTCATATATCGGTGTCTGAATGCTCTATCTGATGGGGCTAATGTAGAAGCAAACGTTACAGGCAGTAGTACTTCTGCGGATGGAACAATGCAGACAATTACTATTCAGATTCCCAATCAAGAGTGTAATGGAGAAAATGAAGATGAAGTAACCCGATGTTTTCTAGAAGTACAACAACAGTTAGAGGAAGAAAATATAGACACCAGTTCAATTGCTGTGTCTGGATTATCGGACCATAATGGCTTAAGTCAAATAGTTACATGA
- Protein Sequence
- MSQALLAYTLPNGAQVLIPTLDAKGDPLFEANSAASIFLSGMQVESDDLDNVVDSACSSETNEIQDNLNTNSFGNSYPDKQDIFGGTVIVNSELSEFVEMHRSKNDMKDCDINIKNFSEERISKSDHICNVKNYDLVQSNCLGSSCDTIKVEEVVTLQEMLDTCETAGIVIKNTNGDSSQLGLDVNCDNGNCDSNIVKDNVSLKSGIKLAVEDVKNAINISDYMDIRDKNASEELVQLPDTVVQTADSVLKEVCDNVTQCLENESLKSREFTGHTNSMILDHLDEFAEMVTLFKCRLCKFAAGNKEELFKHLQTEHLEGPCDSDQCNLEDNVNSAPRNGDIVSEKLVFLCGQCSAGFNSINACKSHMMQVHELIVQESEEPGNSSHSENGDVGTSDIKDYIPVSSINAKDFCFNQKYPTIPTPYKCAVRGCQSKFSEEKDLQIHVGCHTDTENCRDFRCCECQAPFERWRSCAMHLWKVHNIDCGLLTCPICLKYKTATSVPLENHMRIHGEARSFTCPECGKGFKQAAQLHNHRVMHLDRKTSELPRWYASKQCNICFKNYANSKCLKKHIQAVHSKLRPYVCQVCGHASARKAMLQLHYRQHTGEKPHTCPLCDYRTGDHNSLRRHIMRHTGQRPYRCPHCPYSAIQSNSYKNHLRNKHPGQSGVFSCGQCSFKTVSHEGYLLHVADHKNGIINTCSDGGGSDVEVFPGNVAAAQLIYRCLNALSDGANVEANVTGSSTSADGTMQTITIQIPNQECNGENEDEVTRCFLEVQQQLEEENIDTSSIAVSGLSDHNGLSQIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -