GBI_19996-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold352:72433-104831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.75 44 5.4 0.1 2 23 6 27 5 27 0.95 2 12 0.45 27 6.1 2.7 1 23 683 706 683 706 0.91 3 12 3e-06 0.00018 22.4 1.4 1 23 825 847 825 847 0.99 4 12 0.00011 0.0066 17.5 3.7 2 23 854 875 853 876 0.95 5 12 0.51 30 6.0 2.9 5 23 889 907 888 907 0.96 6 12 1.3e-05 0.00078 20.4 2.3 2 23 913 935 912 935 0.97 7 12 0.0027 0.16 13.1 0.2 2 23 951 971 950 971 0.97 8 12 3.7e-06 0.00022 22.1 2.2 1 20 977 996 977 999 0.92 9 12 0.005 0.29 12.3 4.7 1 23 1007 1029 1007 1029 0.98 10 12 0.0075 0.44 11.7 3.5 1 23 1035 1057 1035 1057 0.98 11 12 3.2e-05 0.0019 19.2 5.4 1 23 1063 1085 1063 1085 0.98 12 12 0.0037 0.22 12.7 6.5 1 23 1091 1113 1091 1114 0.95
Sequence Information
- Coding Sequence
- ATGGATATCTCAGTTTCTTGTCCAGTATGTACCCTTTACCTTCGGGAGGGCGTCTCGTTGCAAACGCATTTAAACACTCATCCAAAAGATCAGGTTATTGAAGCATTATTAAAGTACTGTGGCCCTGGAAGGGAAGGAAATGCTCAAAATGAAATGGACAGTATGCTGGCTGCTCAATACACTGGTGAGCAAAATGAACCAGCTCTTGGAGAATCAACAGAGTCTGGAACATCACAGCAGTACCCATCAAGTAGTAGTCACTTTACAGCTGCAGTAACATATCAACAGTTCATGAGTAGTAATGCCTCTGTTGGGGGTGCTGTGATGCCTCAGTGCTTCTCAGTTCCTGCTATTATTGCAGCTCCTGCAGGGGAAATGGGTACGGCAGCAGTAATGCCATTGCTGTATAATCCGTATATCCTCCAACAACAGCAACAACAACTTCAGTTTTATAATGCTTTTCGGACCGTACCGCAACAACCACTTACTCGCCAAATTCTTCCACCATCTCCCTTGTTTCCTATTTCACCGCAATTCAGCATTGCTGCTAGTGGTAATCCTGTATTTCAGAATAATATTCCAGTGTCTTCCAGCTCTGCTGCTGTTCTACAAAACGGAGATAATATTCAGTCAAATTCATCAATTTTTCTGTCATCTATTTCAAATGGATGTCAAGAAGCTAAGCGAAATGAAAAGGACCAGGCCATTGTACCTTCCACCCCTGAATTGCCGAAGTACAGGGATGTTGAAGACAAGCAGTGTTCTCCTAAGCATATAAGTCAGTGTAGTGATAGCCAAGAAACTCAAGAAGCAGACCAGGTACAGGATTTACCAAACAATAGTGCAAATGTAAGGGAAGAGTACGAAGAGAATATAAATAATCAGATTATTGTACCTTCTCCTACTGGTGCAAAAAATGATTGCAGCAACAGTGCATATGGTAGAGATAGAAATGAGAAAATGGTTTCAAATTCTTGTGACAAAGGATGTGCAAATGAAGATGGTAATGTGTGTATGGATGATATTACTGGGGCATCAGATGTACTGTTTAGTCCTGTGAGTCCTAATTTGAGAGTGAGAACAGACCTTAGCAAAGTTAGTTCTGAAGCAAAAGATGAACCTGCAGGAGGTAATAGCAGTGAATTAGAAAATGCTTGTGTGGATGTAATAGTACATGAAGAAAGGAATAGCATGTCTGCAGCTGGCGAGAAATGTAATGAAAATGAAGGTTGGGGATTTCTTTCCGAAACAGATAAAAACTGCTCAGTAGAAGTTTGTCCTGTAGATAGTGCAGAGAAAGATTCAGCAGAATATATCACATCTGATATTTACGCAGATGGGGCTGTTTGTGAAGTGGAAAGCCAACCATCTGAGGCTCAAGTGCAAACAACTGTGTGCAGAGATTCTGCAGCAAGTATGGAAGGAAGGCACTTCAAAGTTGTTGATATAGAGGGTATTCATGTTCTTGTACCAACTCACTTCCTGGCAACTGAAGGAGATCAGGCCCAAAGTGATAACCGTGAAGCAGTTCTAAAACCATCCAGTCAGCAAAGTGGATGCGAAGATCAGACTTCAGATTGTGATACTGATGTAAGTGTAGTGGCTAATCAGGACATTCAGACTGATGAAGTGATGCCTCCCATGGGTGAACTTTCAGGACAAGAGAGTCTTGGAGAAAATGATATCAGCTCTTGGTCTCAGGAGAAGGACGACGTGACGACATCGTACGATCTACTGGCGCGGGAGAAGTGGGAGGCTTCGGACGGGTCGGATGCGGAGAACGACGGCGACCTGGGCGCAAGCCCGGTGCCAACGAAGCTGCTAAAGGTGGCGACGGGCTGCCCTCCGCTGCCGCTGACCATGCCTCTGGCGAGCCCCCCATTCGCCAGCCCGCCGGCGACGAGCCCTGCCTCGGTGAGCCCGCTCCCGACCGCGCCGCCGCCGCCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCCCAGACGACGACCGCCACCGCCGATGACGCCAAGCCCAAGAAGAAGCGGCGGGAGAAGCTGCGTTGCGTGTACAAGTGCTGGACGTGCGACGAGACGTTCACGTGCCCCAAGGAGCGGCGCGTGCACCAGAGCGAGAAGCACGCGGGGCCGCGCGTGGGCGGGCCCGGGGCCGAGGCCAAGGCGGAGCCGTGGCAGAGCGACACCGCGCATAGCCCCGCCCCGCGCGACTCCCCTGCGGCCGCGGATCTCCTCGGCCGCGTCAAGGAGGAGCAGGGCGAGGACTGCAAGGCGGGCTTCAAGTCGGAAGCGTTGGCGTTGGCGCAGGCGGCCGCAGCCGACGAGGACGACGACCTCGACGAGCTCAAGCCCGGCGCCTTCGACGAGGAGCGCCTGAAGGGCGTCAAAGACTTGGAGGAGCAACCGGGTGCGGACGAGAACGCGTTTAAACATCAAAATTTAAATTTACATATTAAACGCCATCTTGGAATAAAGCCGTTTAAGTGTTCTATTTGCGACAAATCTTTCGTTACCAAACAGAAACTGGCGGAGCACACTAACACCCACACGGGCAATACTCCGATTAAGTGCAATCTCTGTAGCGAGACTTTTCGCCGCTACAGCAACCTGATTCAGCATAAAAACCGTCACCACCTGAAGCTGAAGAAAAAAGTGAAGGATTTCATCTGCCATTGCGGGGAGGTGTTCCACTCGCAGAAGAAGCTGCTGTGGCACAAGGAGATCCACGACGAGAAGCCCAAGACGTGCAGCTACTGCAGCGAGCGCTTCGTGCACGCGTCCAGCCTCACGCGGCACATCCGCAAGGCGCACGACCAGCGCTACTTCCCGTGCACGGGCCGCGAGGCCGAGAACGTGGAGTGCCCGGTGTGCGGCTGCGTGTTCCTCAAGACGTCGCTGGCGGTGCACATGCGCCTACACAGCGGGCAGCGGCCCTTCAGCTGCCACATCTGCGGCAAGAGCTTCAGCACCAAGTGGAACCTGCAGCTGCACCGCTGGACGCATGCGGCGCGCTCGCTCAAGCCCTTCAAGTGCTCGCTGTGCAAGAGCGCGTTCATCCGCCACAGCGAGTACACGGCGCACATGCACTCGCACCGCAACGTGCGGCCCTACACGTGCAACTACTGCGGCAGCCAGTTCATCCGCAAGTACAACTGCATCCGGCACGCGCGCGAACACGAGGGCGAGAAGGCGTTCTCGTGCGACGTATGCCACAAGGCGTTCCACCGGCGCTACTACCTCAAGGAGCACATGCGCATCCACAGCGGCGCGCGCCCTTTCGCCTGCCACATCTGCGGCAAGACCTCCAGCACTAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGCGAGGCGAAAGGCTTAATTATAATTGAAAAGAATGAAATCAGTGTTCTGATCAAGGAATTAATTTTTGAGGTAGCAATTCTGTATTGTTTATTAGCTGTGATGTCAAGCAATTTCAACATTGAAACATTGTGTTTTTATCTTCAAGAGTGCCCCAACTACTGTGATATAAATGATTTTTCATGTCATAAAAACCAAGTGTTACTGAAGGAAATATTTAAAGATACAGTAACTGTAGAAGTATGCATTTTGTTTGTTTTATTTGTTGTTATTATTTCAAGTGAAAAAAACATGATTGTAGTAATAGTGCAGTATGCTGTTACATGA
- Protein Sequence
- MDISVSCPVCTLYLREGVSLQTHLNTHPKDQVIEALLKYCGPGREGNAQNEMDSMLAAQYTGEQNEPALGESTESGTSQQYPSSSSHFTAAVTYQQFMSSNASVGGAVMPQCFSVPAIIAAPAGEMGTAAVMPLLYNPYILQQQQQQLQFYNAFRTVPQQPLTRQILPPSPLFPISPQFSIAASGNPVFQNNIPVSSSSAAVLQNGDNIQSNSSIFLSSISNGCQEAKRNEKDQAIVPSTPELPKYRDVEDKQCSPKHISQCSDSQETQEADQVQDLPNNSANVREEYEENINNQIIVPSPTGAKNDCSNSAYGRDRNEKMVSNSCDKGCANEDGNVCMDDITGASDVLFSPVSPNLRVRTDLSKVSSEAKDEPAGGNSSELENACVDVIVHEERNSMSAAGEKCNENEGWGFLSETDKNCSVEVCPVDSAEKDSAEYITSDIYADGAVCEVESQPSEAQVQTTVCRDSAASMEGRHFKVVDIEGIHVLVPTHFLATEGDQAQSDNREAVLKPSSQQSGCEDQTSDCDTDVSVVANQDIQTDEVMPPMGELSGQESLGENDISSWSQEKDDVTTSYDLLAREKWEASDGSDAENDGDLGASPVPTKLLKVATGCPPLPLTMPLASPPFASPPATSPASVSPLPTAPPPPPPPPPPPPPPQTTTATADDAKPKKKRREKLRCVYKCWTCDETFTCPKERRVHQSEKHAGPRVGGPGAEAKAEPWQSDTAHSPAPRDSPAAADLLGRVKEEQGEDCKAGFKSEALALAQAAAADEDDDLDELKPGAFDEERLKGVKDLEEQPGADENAFKHQNLNLHIKRHLGIKPFKCSICDKSFVTKQKLAEHTNTHTGNTPIKCNLCSETFRRYSNLIQHKNRHHLKLKKKVKDFICHCGEVFHSQKKLLWHKEIHDEKPKTCSYCSERFVHASSLTRHIRKAHDQRYFPCTGREAENVECPVCGCVFLKTSLAVHMRLHSGQRPFSCHICGKSFSTKWNLQLHRWTHAARSLKPFKCSLCKSAFIRHSEYTAHMHSHRNVRPYTCNYCGSQFIRKYNCIRHAREHEGEKAFSCDVCHKAFHRRYYLKEHMRIHSGARPFACHICGKTSSTKSNHNKHVKIHHAREAKGLIIIEKNEISVLIKELIFEVAILYCLLAVMSSNFNIETLCFYLQECPNYCDINDFSCHKNQVLLKEIFKDTVTVEVCILFVLFVVIISSEKNMIVVIVQYAVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -