GBI_13048-RD
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold115:3958445-3986217[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.056 3.3 9.0 5.6 1 23 347 369 347 369 0.98 2 12 0.00054 0.032 15.3 0.6 1 21 375 395 375 396 0.95 3 12 4.3e-05 0.0025 18.8 2.7 1 23 454 476 454 476 0.98 4 12 0.068 4 8.7 0.8 2 23 485 506 484 506 0.96 5 12 0.076 4.5 8.6 0.1 2 23 511 532 510 532 0.96 6 12 2.1e-06 0.00012 22.9 2.9 1 23 538 560 538 560 0.98 7 12 0.0052 0.31 12.2 2.0 2 23 581 602 580 602 0.97 8 12 0.0013 0.075 14.2 0.8 1 23 607 630 607 630 0.96 9 12 1.4e-05 0.00083 20.3 0.5 1 23 636 658 636 658 0.97 10 12 0.058 3.4 8.9 3.0 1 23 664 686 664 686 0.97 11 12 6.9e-07 4.1e-05 24.4 2.0 1 23 692 714 692 714 0.99 12 12 3.9e-05 0.0023 18.9 0.9 1 23 720 742 720 742 0.96
Sequence Information
- Coding Sequence
- ATGGAAATTACAGAAGTTATCAGTGGCTGGGATAAAAAGATCTCAGCAGAAGGGGAAAACAAGCATTCAATCTCTGAACTATGCAGACTCTGTGGCAATGAAAACAACAATTTTTTGCCCCTGTTTGGAAGCAATATTGATAATGGCTTAAGGAAGAAAATAGAAATGCATCTTCCTATTCACCCTAGGGAAAACGATGGTCTTCCACAAAGGGTGTGCTACTTCTGTGCCAGCACTGTGTTATCTTTTAGTGATATTTATGAAAGTATTTTGAAGGTTGAAGAAAATTTTCTCAAGATATTGAAAAATGAATTGCCTTCTAAACAAGGAGCTTTTGTCAGCAGAAACAAGGGTACAGAGTGCGGCCTTCACAGCATTGAAAACAGAAAACCACTAGTATCAATTAAGCCGGTTGTGAGAGTTGTGTCTGTGAAGGGTGAGATTGAACGGTCTCACCCACAAGACAGGGAGACCGTCTCCCAGAACAAGCTGGAAAGCAGAATAGACAATGCCTCATTCTCCGTATATGAAAACTCTGATGCAAGTGCTCTACTAGATGATTTGGAGAATGGCATTATTGATGGCCAGTCTGTTGGCAAATCAGATGCAGCAATCACACTTGCCCCTACTGTTCATTCAAGGAATCACCAGGGAACAGATCATGCCGGTCATACTCCTGCACAGTCCACACAAATGATTAATCCAGGGACTCATTTTAATGCAGCACATTATCTAAAGACTGATGACACTTGTGTCACAACAGTGTTAAGTAGGGAAGTTCAAAATGAGATTGCTGAAAGTTCATGTGATACTGCTGATTCTCAAATTGAATTTCATCGTGATATTTTACCTGATAGTAATGATTCAAACACAGTTAATGAAACTGAGTCTTCAGCTGTCTTCAGAGAATACTCTGATCCACAAAGTATGTTGAGGAAGACATGTCGTTATAAATATAGATTAAGAATGATTAGAAATGGATTTCAAAAGATAATGTATATTGTTGTACAATGGGAAAAGATGAAAAATGATGGAGCTTTCAAATGTAAATATTGTAAATGTAGTTTTTATGTTTCTACAGTTTTAGCAACTCATACTAGATTTCATACACAACTAGCACCATTTTATTGCAAATATTGTGGTGAAAGTTTCATGCTTAGTGGATCGCTGAAATATCATATTAAACAATGCATTAAATCAAAAAAACGTTTAGAAATTGCCACTCGTGCCTCCTATTCATCACATCACTCAACTGATCTTCATGCTTCAGATTATTCTGATCTAAATTATTTCAATAACCCACCTAATTCCAGTCATTCAAATAATTCTTGTCATTCGACTGAAAGAACTGATGGTGAATATAGTTGTGAACTCTGTGGAAAGAGTTACAAATTAAAAAGTACTTTGAAAGAACATCTAATGCATCATTTGGGCAGAGGAAGTCGTAAATTAAAATGTGAAAAATGTTTTGCCAAATTTTTAACAAAGGCTGAGCTTATGGAACATTTAAAGAATCATGGCGATTATTTAGTTTGTGAACTGTGTGACAAAATGGTTCTTAATGAGAAAGATTTGCAGACTCATCTAATCAGTCACTCTGCTTTACGTCCTTATTCATGTAGCATATGTGGTGTATCATACAAGAGAAAGTCTCATATGACAAGGCATCTTCTAACTCACAAAAACAATAGAAATCTTAAAAAGAGAGTCAATAGGAATGAGGTTCATGGTAAGGATTTAAAGTGTGATGAGTGCGGTAAAGAGTCAAGGACATGGAGAAGTCATAGAACACACATAATGACTCACAAAAAAGAGAAGCATGAGTGTGATGAATGTGGAAAACTATTTGCTCAGCCTAATGGTGTGATTCGTCACAAGCATACGGTTCATAATAAAGCAAGAGATTTTGCCTGTAAAGAGTGCAACAAAAAATTCTCCGCCAAAGCTACATTAGTGAATCACTTGCGGATTCATACTGGTGAAAGGCCACATCAGTGCTCGACTTGTGGGAAGTTGTTTAGGATACGACAACAGCAAAAATTACATGAAAGAATTCATTCAGACATATTCCCTTTTCAGTGTGAGTATTGTCCAAAGAAATTTAGAAGAAAATTGAACTTGGTTGTGCATACTCGAACACACACGGGTGAGAAACCATATCTTTGCCAAATTTGTGGTCGGGGTTTCGCTCAGCGCAGTGACAGGAAAAAACATCAAAATAGTCATAGATAG
- Protein Sequence
- MEITEVISGWDKKISAEGENKHSISELCRLCGNENNNFLPLFGSNIDNGLRKKIEMHLPIHPRENDGLPQRVCYFCASTVLSFSDIYESILKVEENFLKILKNELPSKQGAFVSRNKGTECGLHSIENRKPLVSIKPVVRVVSVKGEIERSHPQDRETVSQNKLESRIDNASFSVYENSDASALLDDLENGIIDGQSVGKSDAAITLAPTVHSRNHQGTDHAGHTPAQSTQMINPGTHFNAAHYLKTDDTCVTTVLSREVQNEIAESSCDTADSQIEFHRDILPDSNDSNTVNETESSAVFREYSDPQSMLRKTCRYKYRLRMIRNGFQKIMYIVVQWEKMKNDGAFKCKYCKCSFYVSTVLATHTRFHTQLAPFYCKYCGESFMLSGSLKYHIKQCIKSKKRLEIATRASYSSHHSTDLHASDYSDLNYFNNPPNSSHSNNSCHSTERTDGEYSCELCGKSYKLKSTLKEHLMHHLGRGSRKLKCEKCFAKFLTKAELMEHLKNHGDYLVCELCDKMVLNEKDLQTHLISHSALRPYSCSICGVSYKRKSHMTRHLLTHKNNRNLKKRVNRNEVHGKDLKCDECGKESRTWRSHRTHIMTHKKEKHECDECGKLFAQPNGVIRHKHTVHNKARDFACKECNKKFSAKATLVNHLRIHTGERPHQCSTCGKLFRIRQQQKLHERIHSDIFPFQCEYCPKKFRRKLNLVVHTRTHTGEKPYLCQICGRGFAQRSDRKKHQNSHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -