GBI_07279-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold40:8293731-8306366[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00037 0.022 15.8 0.5 1 23 315 337 315 337 0.98 2 15 8.3 4.9e+02 2.2 0.3 9 23 355 369 344 370 0.88 3 15 0.0039 0.23 12.6 0.7 1 23 376 399 376 399 0.95 4 15 0.00018 0.01 16.9 0.7 1 23 405 427 405 427 0.96 5 15 2e-05 0.0012 19.8 1.0 2 23 434 455 433 455 0.97 6 15 0.00081 0.048 14.8 0.1 1 23 461 483 461 483 0.97 7 15 0.027 1.6 10.0 0.2 1 23 489 512 489 512 0.97 8 15 0.39 23 6.3 0.1 1 23 558 580 558 580 0.96 9 15 0.021 1.3 10.3 0.1 2 20 586 604 585 606 0.92 10 15 0.00068 0.04 15.0 0.6 1 23 837 859 837 859 0.97 11 15 0.0019 0.11 13.6 0.7 1 23 866 889 866 889 0.96 12 15 0.0025 0.15 13.3 0.0 3 23 900 921 899 921 0.96 13 15 0.0062 0.37 12.0 4.1 3 23 929 951 927 951 0.90 14 15 0.00029 0.017 16.2 2.7 1 23 957 979 957 979 0.98 15 15 0.00044 0.026 15.6 7.0 1 23 985 1007 985 1007 0.99
Sequence Information
- Coding Sequence
- ATGGAGGCGGAACCTGGCGGAGAGGAGGCTGCGGCAGACTCGTCAGTTGCCCAGCTATCATCATTGACAGACGACTCCGAACCGGTGGTCATATTGGTGCACTCTACGGGTGCAGATGCTTCAGTGATCGATGGAACTCGATCTGTTCCTGGGCCATCTTTCAGCGCCTCTGCTATGGCACCCGTCGTGACTTTGATCCAGCAGGGAGAAGATATTCCTTCTCTTGGATCATCTGCACCCTCTCTGATAGACAATGATCAGACTATGGTGTTGGCATCTGGAGATGATGAGAGTCTAAATAATCTTGTAGGATCAGTTCCAGCAGGTGAAGGTGGTGCTGATCAATGCGTAGCTTTATTTCAAACTGAAAATGGTCAAATAGTGTGCTTGACTTATACGGTTGCCCCAATAAATGGAGAGGAGGCAGATGAAGAAAATGTAGCTGATGTGTTGGGTACAAATAACACAGCTGGCCTAGGCAGCTTTGATATTGTAGATGGGCTACAAGAACACTTTATTTTGGATGGGCTAAATGCAAGTGCTTCCATTGCTGTCCCTAGTACATCTGCAGATGTACACATTTCCACAAATTTGTTGTGCAATCTGAATGAAGCCAAGAGAACACCAAAAAAGGTGAAGGCGCAGGAGGAAGTGCCGGGATTGGTGTCGGTGCCTGTGGAAGCGCTGGGGAAGCTGCGGTTGGAGGATCGACTACGCGTGCTGGAGCAGTTGCTGCCCCCACCCCCGCTCACCGCCTCCAGATCTATCTCGACTCCGCCGTCGGGGCGTGACGCCAAAGGGAAGCGCAGTCTTCCGAAGGGCCCACCTCCGCCCTTGCGGCCGCGCCCACCAGCCACAGCCGAACCGACCGCTCCAGTTCCGGTTCCCACCTCTCGCCCGATCCCCAACCCTAACGCTCTCCCTGTGCCGCCGACGTCTTTATACGCGTGCGACCTGTGCGGCGCGTGCTTTGAGCGGCCCGCGCAGTTCTACGGGCACTTGCGACGCCATCGCGGCGAGCGCGTGCACTTATGCTCGCTGTGTGAGGGGCCCTCGCCTCCAGAGTTCTCTTCGGCGGCCAAGCTACGTGCGCACGAGCACCGTCACCACCCGGGCGGGCGGCCGCACGCGTGCCTGCTGTGTCCCGCGCGCTTCGACCGCGCCTCGCAGCTCAGCTATCACACGCGGCGCGTGCACGCGGGCGAGCGCCCGCACGCCTGCGCTCTCTGCCCGAAGGCCTTCTTCAAGTCCTCAGACCTGCGCACGCATCTCAACGTACATCTGGGCATTCATAAGAGCGTATGCGAGACGTGCGGCCGGCGCTTCGGACACGTGAGCAACCTCATTCGCCACGCTCGCACGCATTCGGGTGTGCGACCGTACCCATGTCCCGACTGCGGCCGGCGCTTCGGGCAGCTCAACGGCATGCTGCAGCACCGTGCCTCTCACAACGACGCGCGGCGATTCCCCTGCCCGGCATGCGGTCGCCTCTTCAAGACTGTGGCTGTCATGCGCAAGCACTCGCGCACCACGCACGGCGCCTACCCTCCGCCCTTCCGGCTGGGAGGTCCAACCCCTAGCTCGAGCGTAGGCTCTGCTGCCGAGGTCATAACCCCCGACGACCCCGACCTGGAAGCCCTCGACACAGAGCCTCGCCCCCGCCCGCGCCGCTTCTACTGCGCTGCATGTGGCGACGCTTTCGAGTTCGCCGCACTGCTTCGCCAACACGAGCGCCAGCATGAGGGCGGCGAGTTGCCTTGCGGTGGTTGCGGGCGCACGTACGCGTCTGTCGAGGAGCTCAAGACGCATGCGTGCGCTCAGCCCGGCGTCGCCCGGCCTTCTGCTCCTGCCTCTAGGCCTCATTCTCCTCCTCTCCCACCACCGCATCCTTCTCAACCGATCTCACCGCTCCCGCCTCCGCAGCCTTCACCCCCGCCTCCGCCTCTATCCCTGGAGCAGTCGGTTCCCGTCCCAGTTTCGGCCCCCGTGTCTGCCAGCGATCTCAGTGAGGGGCAGCGGCTGCTAGAGTCGTTACTGCTAGGAGACGCGCCTGTGGAGGAAGGACAAGGGGTGGAAGCGGAAGTGGTGACGGATACTCTAGTAGAGGGGGAAGTGAATGGCCTGATACCGACGCCAACGTTGGCAACGACTGAGAGCCCTGAGGTAGTCGACAGCAAGATCGTGGTTATCGTTACGTCCGGAGCCCCACTCAGAGACGTTGCTCGCGAAGGTGGCTCTGAGGACGACGGCGACGCTGGCATGCCACTGCTGGTATTGCGCCCCCGCTCGGCCCCCTTGCCGCTCCCGCCTGCGCCGGTCGCAGAAGCGGTGACGCTTGCTTCTGGTATCGATTCCCGCTCTCCTTCGCTGCTTTCCAGGGACAGTCACTTACAGGACATAGCGAAACAAGCGGCCAGTTCTCCCGACAATCCTCAGATTGATCCCTCCGCCCCCGCCGTATCAGGACCTTCTCCCAACACCGTCGGCCGCCGCAAGGCAAACCGAACTTTCTCGTGTTCTGAGTGCGGGAAGGTATTCCTCAAGAGTGGCAACTACAAGCAGCACCTCGGAATGCATTTTGTGGACCAGAAGAACCATAAGTGCCCTATATGTGGCCAGCTTTTCGCCTGGAAGTCCACTCTCAATAAGCATGTCTCCAAAGTTCATGCAGAAGGGGAACCACCTCCTCGACCCCCTTGTGAGCTCTGTGGCCGTGAATATGCCACTCTTGCCCAAGTCCAGGAACACATTCGGCGCGATCATTTTCTACAGAGGCCCCATGCTTGTTCTGAGCCCTCCTGTACCAAACGTTTCTATAAGAAGCATGATTTAAAAGTGCACCTCAGGATGCACAACAAGGAGCGGCCATATATTTGTGGAAGCTGTGGCAAAACCTTCTACCACTTATCACATATTATCAGGCATGAGCGCATCCATTCAGGATTGCGACCATATAAATGTACCGATTGTGGCCGCCATTTCAATCAATCAAGTGCTTTGAAATGCCATAGGAGAAGACATCGTGAGAAGGAGCACGTGCTGCAGCAGTTGCAGTTGCAGTTTCAACACCAACAGGATCAGGAAGAGATTCAGCAACTGAACAGGAAGTCCAATGAAGAAGACCAGTGCCTCTTAGAAGAACAAGTACTAGAGGGAACTGGGTTAGAAGCAGCAGGTCTAGGAACAGTAGAGCTTGATGCACCTACTCTGGAGACTGCAGAAGATGCAGCATCATTATTGACTGCTCCAGGCTTAGAGGGAGATCCTCCTGAACCGTTAGTTGAACTCACAGTCACTGATGCAGAAATGGTCCTTGGACTGCCAAGTAGTGTATTTTCGCAGGGCCTTTTTCCCGATGTAAACTAA
- Protein Sequence
- MEAEPGGEEAAADSSVAQLSSLTDDSEPVVILVHSTGADASVIDGTRSVPGPSFSASAMAPVVTLIQQGEDIPSLGSSAPSLIDNDQTMVLASGDDESLNNLVGSVPAGEGGADQCVALFQTENGQIVCLTYTVAPINGEEADEENVADVLGTNNTAGLGSFDIVDGLQEHFILDGLNASASIAVPSTSADVHISTNLLCNLNEAKRTPKKVKAQEEVPGLVSVPVEALGKLRLEDRLRVLEQLLPPPPLTASRSISTPPSGRDAKGKRSLPKGPPPPLRPRPPATAEPTAPVPVPTSRPIPNPNALPVPPTSLYACDLCGACFERPAQFYGHLRRHRGERVHLCSLCEGPSPPEFSSAAKLRAHEHRHHPGGRPHACLLCPARFDRASQLSYHTRRVHAGERPHACALCPKAFFKSSDLRTHLNVHLGIHKSVCETCGRRFGHVSNLIRHARTHSGVRPYPCPDCGRRFGQLNGMLQHRASHNDARRFPCPACGRLFKTVAVMRKHSRTTHGAYPPPFRLGGPTPSSSVGSAAEVITPDDPDLEALDTEPRPRPRRFYCAACGDAFEFAALLRQHERQHEGGELPCGGCGRTYASVEELKTHACAQPGVARPSAPASRPHSPPLPPPHPSQPISPLPPPQPSPPPPPLSLEQSVPVPVSAPVSASDLSEGQRLLESLLLGDAPVEEGQGVEAEVVTDTLVEGEVNGLIPTPTLATTESPEVVDSKIVVIVTSGAPLRDVAREGGSEDDGDAGMPLLVLRPRSAPLPLPPAPVAEAVTLASGIDSRSPSLLSRDSHLQDIAKQAASSPDNPQIDPSAPAVSGPSPNTVGRRKANRTFSCSECGKVFLKSGNYKQHLGMHFVDQKNHKCPICGQLFAWKSTLNKHVSKVHAEGEPPPRPPCELCGREYATLAQVQEHIRRDHFLQRPHACSEPSCTKRFYKKHDLKVHLRMHNKERPYICGSCGKTFYHLSHIIRHERIHSGLRPYKCTDCGRHFNQSSALKCHRRRHREKEHVLQQLQLQFQHQQDQEEIQQLNRKSNEEDQCLLEEQVLEGTGLEAAGLGTVELDAPTLETAEDAASLLTAPGLEGDPPEPLVELTVTDAEMVLGLPSSVFSQGLFPDVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -