GBI_06814-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- ZNF296
- Assembly
- GCA_017312745.1
- Location
- Scaffold36:4668215-4678538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9 1.7e+02 3.6 1.0 1 20 41 60 41 62 0.89 2 13 0.00011 0.0064 17.5 3.3 2 23 705 726 704 727 0.94 3 13 0.001 0.062 14.4 4.3 1 23 733 755 733 755 0.97 4 13 7.2e-05 0.0042 18.1 3.7 2 23 762 783 759 783 0.94 5 13 0.0016 0.092 13.9 2.6 1 23 789 811 789 811 0.98 6 13 2.1e-06 0.00012 22.9 1.6 1 21 817 837 817 838 0.95 7 13 2.6e-05 0.0016 19.5 2.3 1 23 845 868 845 868 0.95 8 13 1.4e-05 0.0008 20.4 2.8 1 23 874 896 874 896 0.97 9 13 2.8e-05 0.0016 19.4 3.2 1 23 902 924 902 924 0.98 10 13 0.00094 0.055 14.6 1.1 1 23 930 952 930 952 0.98 11 13 0.00016 0.0093 17.0 5.0 1 23 958 980 958 980 0.97 12 13 0.01 0.59 11.4 1.1 1 23 987 1007 987 1007 0.97 13 13 3.1e-05 0.0018 19.2 0.8 1 23 1013 1036 1013 1036 0.96
Sequence Information
- Coding Sequence
- ATGCTAACGCGACGTGATTCCCCTGATGCAAACGAAAAATCTTTGGGGTTGGTCTCTGGTTTCCTTTATTTTCAATCGGCAATGTGTGGTTATAATTCGTGCGGTAGTTCAACCGCTCACTATCACTGTCAAATGTGTGGTTTTGCTACGAGTGAGCTGTCTCATACTAGCGTGCACAAGGAAACTTGTACTAGATTAACTAAGAATCGTTTCGCTCAATCGCCTTGTTTACAAGTAACTAGTAACACTCCAGGATCCGATCATTCATTATCAACTGCATATGATCCTGGACCAGAATCAACAATGCCTGTCAGTTCAGTGTCAACATCTGTGCAAATTAGTAATTCTAGTAATCATCTCTATTATCGAACGGGCTCTCAGCAGTCATCAATGTTTAACCCTCTGCTCTCTGGGCAGAATCAACCATTATATAGTGGTGTTTTTGGTTCTCAAGTAGGGTTCTCAACTCAAAATAATTACTCTGCTAGTTTCAATGGATTTACTCACATGGAACCACCTCCGTGGCTGTCTGAGACTCGTATGAGTTCCTCTACCAATAGCACTCCAAGCCTTGATGCTGGAAGAACTAGCAAAACTCTTAGCTGCAATTCACAAGGCATGTCACATTCGTGTTGTGGTAGTAGGGTGGGTGGATTACTTGAGAATATTGGATTGTGTTCCCCATTATCAACAGACACTTACAAAACGTTAAATAAAGAATCAAGTTGCCAGCACAAAAGTGCCATAAGTATGGAGAATCAAAATTGGTTTTGTGGCCAGGGAATGTTAGGATACAGTGGTCAGGTGTCCGGTCAAGGCATACAAAATAGTATGTATAAGTGTTCGGAACCCTTTCCCTCGTGTACTATGTCTCAGTTAGGCATTCCATTAAATGAACAAGACTTGAAACATTCTAATTCGTGCTATGAGTCTAGTTCTACTCAAAAACAAGGCTCAACTTTTTTGAGTTCTACACGGAAATCAAGCTTCATAGAAATCAACAAAGATCATTGTTCCAAATTTGCATCCCAAAAAACACCTGTTGATGTACAGGATCATAATTCTCCGTGTATGCAACCCAAGGAGCATGGGAATTTTGATGGGCATCCAATCATGTTTGGAGGAGTTGATGGCGATTTACATGATGACATGTATTCTCAGAATTCAGTAGTCATACAAAGTTCAGAAGATCGAAGTGTGTCAGTTCCGTATACTCATATGAGTAAATCAGGGCAACTCTCTCAATCTAGTGTTCAGGAATCTGGAAAGAGCTTCAATATTTCACATTCTACCCAGGCATCTTCTCTATTCTCACGGTGTAATCTGCCAACTTGTGAAGCCCTTGATGGCTATTTGCAACTTGAAGGACAGCCACTGTACCAGTACCCACAGATTGCCCCTACTACAAATAATATTGATGACGACCAAGCAAGTAATCAAGGTTCTTGTAGTGGAGCTGCAGAAAGTGACATAATTGTGGAAGAATCTGAAGAGGAGGTAATGGAGAATGAGATATCTGTTGAGTATGCAAAATGTGACTCGAAGTCTAGCTGTTTAGTTTGCAACTCATCAAATGTACATTTTGTTCACTTGAGTGGAATCACTCCTGTCACGTCAACCTCACGTGTTCCAGTTGTAACTAAATTAGCCCAAGTGGTAGCTTCAGACTCCTCACCTTCCCTTTCATTTCACAATGAATTCATTTGTAGGCGGTGTTTGAATTTAGTAGACACTTTGGACTGCTTGGAAAACAAATTGGCTTCAGTGAAACAAAACCTGATTGAATTATATAAAGGAAGAGATTTGCTTACAAAATCGTCTGAGACTACTAACGATATTATTTCTGAAAATAACAATGATGATAATATCTGCAATAATGAACAAGCTATTTGTAATTCTGAAGCCAAGACTACAGCAAATTCAGACGTGGAAGCTGAAAGAGGTGAGCAGTTAGATGAAGTGCAATCCAGCAGTGAACCTAATTGTGTGAACAAAAAAGAAGATTCTGTGGTTCCTGATTCACCATGTGAAAAAGATCCCGAATACAATAGTGAAGATGATTCTTGTTTAGTAAGCGAAGATGAAGAAAGAGAGGATTTGAAGGAAAATATTACATGCAGAGTGTGTGACAAAGTTTTTCCATCAAAAGAACATTTAAATAGTCACACGCAGCAACACCATTTAAAAACTTTCAATTTCTTTTGTGATCGATGTGGTCGTGGTTTCATGCACCATTCAAGCCTTGAGAAACATCTTCTTTCACATACACAGGAGTATCGTTGTCAGTGTGAAGTGTGTGGAAAGTGCTTTGTTCAGAGGCAAGCATTGGATGATCATCTTCGCAAGCATCGAGGAGCATTTCGTTTTACATGTTCACATTGCAAGAAAGGTTTTCTTTATGCTAGTTCTTTGCAGGTACACGAGCGCTCACACACTGGTGAACGTCCATTTGTATGTCAACATTGTGGGAAAACTTTTATATCAAGTTCACACTTAACATCTCATTTGCAGTTGTGTTCAGGAGAGAAGATCTTCCTTTGTGACCATTGTGATAAGAAATTCGCAACCTCTCTGCAACTGAAGTCGCACATGATAACATCACATGAATCAAATCCTCAGCATAAATGTGATGTGTGTGGAAAAGTTTTTGTAAAGCCTAGTGATTTGAAAGTTCATTGTCGAACCCATTCGGGAGAAAAACCACATCGATGTGAAATTTGTGGGAAGTGTTATTCAAGTGTGGGGAATTTGAATCAACATGCCAAAAAGCATAGTGAACAGCAGCCATTCAAATGTAATGTTTGTGACAAAGGATTTTTACGAAAGGCGGTGTTGGAGCGTCATAAAAACAAACATTCTGGTGAGCGTCCATTCCCTTGCACTCACTGTAACAAATCATTTGCATCTTCTCGAGACTTGCATTCTCACACTAAACTTCACCTGGGCACCATGAAGAAATATACATGCCCAGTTTGTGGAAAAACAATGAACAATGGCCTTAAAGTACATATGAGAACTCATTCTGGTGATAAACCCTTTTCCTGCCCAGAATGTGAGTCCTCATTTAGCGTGAAAAGTACCTTAAACAAACATATAAAATTGAAGCATCAGCATGTCACTTGA
- Protein Sequence
- MLTRRDSPDANEKSLGLVSGFLYFQSAMCGYNSCGSSTAHYHCQMCGFATSELSHTSVHKETCTRLTKNRFAQSPCLQVTSNTPGSDHSLSTAYDPGPESTMPVSSVSTSVQISNSSNHLYYRTGSQQSSMFNPLLSGQNQPLYSGVFGSQVGFSTQNNYSASFNGFTHMEPPPWLSETRMSSSTNSTPSLDAGRTSKTLSCNSQGMSHSCCGSRVGGLLENIGLCSPLSTDTYKTLNKESSCQHKSAISMENQNWFCGQGMLGYSGQVSGQGIQNSMYKCSEPFPSCTMSQLGIPLNEQDLKHSNSCYESSSTQKQGSTFLSSTRKSSFIEINKDHCSKFASQKTPVDVQDHNSPCMQPKEHGNFDGHPIMFGGVDGDLHDDMYSQNSVVIQSSEDRSVSVPYTHMSKSGQLSQSSVQESGKSFNISHSTQASSLFSRCNLPTCEALDGYLQLEGQPLYQYPQIAPTTNNIDDDQASNQGSCSGAAESDIIVEESEEEVMENEISVEYAKCDSKSSCLVCNSSNVHFVHLSGITPVTSTSRVPVVTKLAQVVASDSSPSLSFHNEFICRRCLNLVDTLDCLENKLASVKQNLIELYKGRDLLTKSSETTNDIISENNNDDNICNNEQAICNSEAKTTANSDVEAERGEQLDEVQSSSEPNCVNKKEDSVVPDSPCEKDPEYNSEDDSCLVSEDEEREDLKENITCRVCDKVFPSKEHLNSHTQQHHLKTFNFFCDRCGRGFMHHSSLEKHLLSHTQEYRCQCEVCGKCFVQRQALDDHLRKHRGAFRFTCSHCKKGFLYASSLQVHERSHTGERPFVCQHCGKTFISSSHLTSHLQLCSGEKIFLCDHCDKKFATSLQLKSHMITSHESNPQHKCDVCGKVFVKPSDLKVHCRTHSGEKPHRCEICGKCYSSVGNLNQHAKKHSEQQPFKCNVCDKGFLRKAVLERHKNKHSGERPFPCTHCNKSFASSRDLHSHTKLHLGTMKKYTCPVCGKTMNNGLKVHMRTHSGDKPFSCPECESSFSVKSTLNKHIKLKHQHVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -