GBI_04450-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold20:8882675-8888404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.8 1e+02 4.3 1.3 2 23 419 440 418 440 0.93 2 18 1.9 1.1e+02 4.1 1.4 1 12 446 457 446 468 0.87 3 18 0.031 1.8 9.8 2.4 2 19 482 499 481 502 0.93 4 18 0.7 42 5.5 3.0 1 23 509 531 509 531 0.89 5 18 0.0088 0.52 11.5 0.1 3 23 539 560 538 560 0.97 6 18 3.4e-05 0.002 19.1 2.3 1 23 566 588 566 588 0.98 7 18 7.6e-05 0.0045 18.0 0.5 1 23 594 616 594 616 0.97 8 18 0.00025 0.015 16.4 3.1 1 23 622 644 622 645 0.96 9 18 0.00036 0.021 15.9 1.9 1 23 661 683 661 683 0.98 10 18 0.00085 0.05 14.7 0.9 1 23 698 721 698 721 0.95 11 18 1.8 1.1e+02 4.2 4.7 1 23 727 749 727 749 0.98 12 18 0.0018 0.1 13.7 0.7 1 23 768 790 768 790 0.97 13 18 3.8e-06 0.00022 22.1 0.7 1 23 796 818 796 818 0.99 14 18 2.1e-05 0.0013 19.7 1.0 1 23 824 846 824 846 0.96 15 18 0.0024 0.14 13.3 1.6 1 23 852 874 852 874 0.97 16 18 0.012 0.69 11.1 2.6 1 23 880 902 880 902 0.96 17 18 8.4e-07 4.9e-05 24.2 1.2 1 23 908 930 908 930 0.98 18 18 3.7e-05 0.0022 19.0 0.5 3 23 938 958 937 958 0.95
Sequence Information
- Coding Sequence
- ATGGTTAGCCATGCATTGGAGATTGTGAGATGCATAGTTCCTGGCTGTGAGAATGCCAACATCTCCTGCCCTGAGAAAAGTTTTTTTCTCCTTTCGGCCCACGAAGAAAGATGTCAACACTGGTTGTTAGTTTGTAAAAGGGAAGATTTGTTAGAAAATGCTTCGGCATATGATGAATTTGCTATATGTTCTGATCATTTCATTGATGATCAATTTCAAAATATAGCTCACACCAAGCTTAAAGATAATGCTGTACCAACCATTTTCCCTTCACATCAGACAATGCATTTTAATTCTCACATAAATGTTGTTGAAGATAGCATAGTATTCATTAAATCTGAAGAAACTCCTTTAATTAATTATGATGTGATTAATGAAGGTGAGCAAGGTAGTAATAACTTTGAGAATGGAGATGTGAAGTCCACGCAACAGTTGTGCCGTCTATGTGCAAATGTTGCCGAAGAAATGGTGTATTTATTTAATCCTCCTGGGAAGAATATGCATTTAGCTCAAAAAATAAATGCTAGTCTGCCAGTAACTGTTCGTGATTCTGATCCCCTTCCAAAACAACTTTGTACAATCTGTGTAACTAAAGTTAATATGTGTCATGAATTCGCAGAAATGTGTGTACTTGCTGAAGAAAAACTTCTTGGGCTTGCAAGGAATAATGCTTTTCATGCTCATCGTATTGCTGGAAGTTTTAAAAACATGCCTGAGATTGTAGCGTCAGAAATTGGTCAAAATTTTAGCAGCATAACTGTTGTAGAAGGAGGATCTCAGTATAACCATGAAAAAAACTGTGCATCTGAAGACATTTCATGCAAGACTAATCTCCATTGTGGCCTTGGTTATTCAAATAGACACCTGCAAGATAACATAGAAAATGAGGCAGATTTTCCTTTGTTTGCTTGCCCTTTATGTCCTGAAGGCACTGTTGGTATTAAAGATAATGAAGATTCTATAATTGATGGTTTCCAAAGTGATGACGAAAGTAGGAATGAATATTCTTTGAATATTTCTAAACAGAAGGGTACCTCCTGTACCATTGTGACCAGAACTGAAAGCGTAGGTACTAATATAGTATTAGAAAATGCTCTTTTAGAAATAAATAAAAATGAATGTGATGAGGATGATAATGAAGAGAGAGAAGAATGGGGGAATTCACATTCCTTAAAAGTAAATTCTTTGGAGGAGAGTGTGGTAAAAGATGGAAGTGTCCCTAACAATTCAAAAAGTTTAGATAATACTAAAGTAGAATGTTATATGTGCCAAGAATCATTTGACACTTTAGACTTGTGTTTAAATCATTCTAAAATGCATTTTAGTGATGGAAATTACCCTTGTTCTGTATGCAGTAAAATTTTTAATAATGAAATTGAACATGCTCACCATTGCACACTTCATACAGCTACAACAAAAAAAAATAACAATAGAAAACGTCTACAATGTGATATCTGTGAGAGGAGGTTCAACAGCCAAAGGACTTTTTTCAACCACTCGTGTTTAAATTCTGACACAAAACAATATCGTTGTAATGCATGCAAACGATCTTACAGTACTCAAGAACGGTTAATTTTTCACAAAAAATTTCACGAAGGAGCTCGACCAAATTTTTGCGAACGGTGTGGAAAAGAGTATGATAATGAAGGCGCTTTGTATTATCACACAAGGATGGTACATGAAGGAGAACGACCATATTCTTGTAATACGTGTGGCAAAAAGTTTTATTCTAATTCACGTTTAGTGTCTCACAAGCGAGTTCATACAGGGGAACGACCTTTTGAGTGCGAGGTGTGTGGAAGAAGATTCTATGACAGAGAAACACTAAAGGGACATTATGTAACTCACATGGCAGTTAAACCTTTTCAGTGTGATTATTGTGGGGTGTGTTGGGGTCGTAAAAGTCTCTTGAATCAGCATATACGAACCCACCATTCAGATGATAGCAGTGCATCTCGTCGAGTGCCTTCTCTTATTCATTATTACTGCAAAATGTGTGACCAAACGTTCACAAATTCAACTGATGTACTGATGCATCGAACAACGCATTGGAAGACAAGTTCACCTGATGAAGATATAGATCCCAGTGCTCATGTATGTGAATATTGTGGTGAATCCTTTTCCTTAGTTGCTATGCTTGTGAAACACAGGAAACAGAAACATCCTGATGAAAAACCCTTTGTATGTAGTCTTTGTAATACATGCTCACATACACTGTATGAAGCTCGGCTGCATAGAAACACACATTCATTGAGCAAAGAAATGAAAACAGAAGAAACAAAGGTTGAAAAATCTTCTACATTCATTTGTGAAGCATGTGGAAACATTTTTACTGAGAAACGTAAATTCATGAGACACATGCGTGAACACAAAGCAAATCATTCTTACAAATGTCAAGTGTGTGGTAAACAGTTTATTGATAACCAGAGACTCACAGTTCACATGAGACTTCATACTGGTGAAAAACCCTATCCTTGTCATGTTTGTGGCAAAAAGTTTTCTCAGACCTCTGCTCTTTACACTCATGCCCTCCTTCACACTGGGGAGAAACCTCATTCCTGTGATTTGTGTGGCAAAGCATTTCGAATCAAGGCTGATCGTGATAACCACAGAAGGACACATACGGGTGAAAAACCATACAAATGTGAATTTTGCAATAAAACCTTCAGAACTGGTCAAGTGTATTATCAGCATCGCATGATTCACACTGGTGAACGTAGGTTCCCCTGTAACATTTGTGGGAAAGCCTTCAAACGTTCCCACACTTTAGTAGTTCATAAAAGGATTCATACTGGTGAGAAACCAAATATTTGTGATGTTTGTGGGAAAGGATTTAGGCAGAGAAGTGACATGAGGAAGCATCGGGCACTTCATGGAACAACTGATCAAGTCATTTTTTAG
- Protein Sequence
- MVSHALEIVRCIVPGCENANISCPEKSFFLLSAHEERCQHWLLVCKREDLLENASAYDEFAICSDHFIDDQFQNIAHTKLKDNAVPTIFPSHQTMHFNSHINVVEDSIVFIKSEETPLINYDVINEGEQGSNNFENGDVKSTQQLCRLCANVAEEMVYLFNPPGKNMHLAQKINASLPVTVRDSDPLPKQLCTICVTKVNMCHEFAEMCVLAEEKLLGLARNNAFHAHRIAGSFKNMPEIVASEIGQNFSSITVVEGGSQYNHEKNCASEDISCKTNLHCGLGYSNRHLQDNIENEADFPLFACPLCPEGTVGIKDNEDSIIDGFQSDDESRNEYSLNISKQKGTSCTIVTRTESVGTNIVLENALLEINKNECDEDDNEEREEWGNSHSLKVNSLEESVVKDGSVPNNSKSLDNTKVECYMCQESFDTLDLCLNHSKMHFSDGNYPCSVCSKIFNNEIEHAHHCTLHTATTKKNNNRKRLQCDICERRFNSQRTFFNHSCLNSDTKQYRCNACKRSYSTQERLIFHKKFHEGARPNFCERCGKEYDNEGALYYHTRMVHEGERPYSCNTCGKKFYSNSRLVSHKRVHTGERPFECEVCGRRFYDRETLKGHYVTHMAVKPFQCDYCGVCWGRKSLLNQHIRTHHSDDSSASRRVPSLIHYYCKMCDQTFTNSTDVLMHRTTHWKTSSPDEDIDPSAHVCEYCGESFSLVAMLVKHRKQKHPDEKPFVCSLCNTCSHTLYEARLHRNTHSLSKEMKTEETKVEKSSTFICEACGNIFTEKRKFMRHMREHKANHSYKCQVCGKQFIDNQRLTVHMRLHTGEKPYPCHVCGKKFSQTSALYTHALLHTGEKPHSCDLCGKAFRIKADRDNHRRTHTGEKPYKCEFCNKTFRTGQVYYQHRMIHTGERRFPCNICGKAFKRSHTLVVHKRIHTGEKPNICDVCGKGFRQRSDMRKHRALHGTTDQVIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -