GBI_09044-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold59:1764268-1777334[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00085 0.05 14.7 0.6 1 23 78 101 78 101 0.97 2 13 9.8e-06 0.00058 20.8 0.5 2 23 110 131 109 131 0.97 3 13 3.8e-05 0.0022 19.0 1.8 1 23 137 159 137 159 0.97 4 13 7.2e-05 0.0042 18.1 0.3 1 23 165 187 165 187 0.95 5 13 3.3e-06 0.00019 22.3 0.8 1 23 192 214 192 214 0.98 6 13 0.00038 0.023 15.8 1.0 1 23 220 242 220 242 0.95 7 13 0.00036 0.021 15.9 2.4 1 23 248 271 248 271 0.98 8 13 0.01 0.62 11.3 1.9 3 20 332 349 331 351 0.94 9 13 0.0015 0.088 13.9 5.6 1 23 354 376 354 376 0.94 10 13 4.3e-06 0.00025 21.9 1.2 1 23 382 404 382 404 0.97 11 13 6.9e-05 0.0041 18.1 4.0 2 23 415 436 414 436 0.97 12 13 0.00042 0.024 15.7 6.7 1 23 442 464 442 464 0.98 13 13 0.0014 0.08 14.1 2.7 1 23 470 493 470 493 0.97
Sequence Information
- Coding Sequence
- ATGAACTGTAGAGATGTTGAGGTAGCTGACTGTATAATGGATTTAGTGGCTCAAGAGGAAAAAGATACCACTACGTTGTCAGATTCTAGAGATGGGACTGCAAAGCAGACCACAACTGGTATTATATTAAAACACAACTCATCAGGCAATGAAAGTAACATGCCAGAGGCAAACCAATTCCAAGCAAAGGAGAGCCTCATAACAGGATTTGATGGTGTAGGTGAGCATCCGTACGTATGCTCCTTCTGCCAAAAGCGATTTGCATCTAAGGCGAGTGTGGATACTCATCAATTGCGAGCTCACAATGTCAATAGTGATTCTGCATTATCTTGCTCAAAATGTGGAAAACTCTTTACTCGTCGTAGTGCCTTAGATGTACACTTAAGAATCCACAGTTCAGACAAACCATTTCAGTGTGAGCACTGTGGAAAATCTTTTACCCAGAAGGTTTCTCGTGATATCCATATTGCAAAGCACACAGGCAAATATAACTACCGATGCTCAGTTTGCCCAAAGGCCTTTGCTTCGCAAGCAAAACTAAATAGTCATAGTTTTGTACACAAGACACCACGTTTTACATGTGAATTGTGTGGGCATGGTTTTGTACGCCAGGACACATTGATAGTACACCAACGTTCTCATAAAAGTGAACGTCCATTTCAGTGCTCGGTCTGCTCTCAGACATTTACTTCTCAATCAAGGCTTCTCTCTCACAATGAGATTCACAGAGAGGATCATCCATATAGATGCACTAGTTGTCATGCTCAATTCAAACAGAAGACGGGATTAGCAGCACACTTACGAAGGCAACACAACATGAAAGTATCTATTTCAAATTCTAACATGGAATCAGAGCAAGTGATTGAGCATACACCAGATCTCTTCACATCGTCAATTGACACTGCCCAGATCACCACTCCAGTAGAATCTGTACAACCTGAACTGGATGATAAAAATTCAGCATGTAATGTATCTCAGAAGAAGGGTTTGTTATGTGCTCATTGTGGAAAGAAGTTTCACAAGAAACAGAGTTTGAAGGAGCATGAGATGGAGCCTTCTTTTGAGTGTAACTTATGTGGCAAACGATTCCATCGCAGTGATGTTTACAAACATCACATGTTTTTGCATACAAAGGAACGTCCATTCAGTTGTGCACACTGTGGGAAAGCCTTTGCTTCAAAAACTAACCTCAGTACACATTTAACCATCCACTCTACTTCTAGTCAACCAGCTCTTGAATTGCAGTGTGATGATTGTGGCAGAAAATTCAAGCACAAAAACACTTATATTTTACATAGAAAAACTCATGTAGGAGATTTCACTCACACTTGCACTACTTGTGGTAAGAAGTTCATGAAGAAGAGCCACTTTGAAGGTCATTTGCGAAGCCATACTTCTAACCGCCCATTCATGTGTCCAACATGTGGCCGACGTTACAAAGAACGAAAGCATTATGTTGAACATGCTCGTAAATCACACCCCAATAATTTCAGCTTGGCATCATTATTTGCCTCTATTGCTAATGAAGATGGACAAATTGATCATATGGCTGATATTCTATGTCCTGCAGCTCCTTCCCTTCATCAGGAGGATAATCCATCTGGCTTAAACATCTCTAGCCTACCAGACCAGTTGCAGCCCACTTTAGTGGAGATTTCAGATGTAGCTGCTTCTAGTAGTCTGGACCCAGGCTATCTGCTAAATTCTCAAGTTAATGTGAATGAAACATCAATTTCAATGGATACACCTATGACAAACTTAGAATTTTCATCCCTAGAACCCATGCTTCAAGAAATTGAGATTCCCAATACAACACAATTTCTAATGTCATCCAATCAGCCGCAAATAGAGAAAAATACTTGTGAAGTAGTAATGCCTGTGAACACAATGTCTCTTACAGTCCTTTCAGCAGAAGACACAAGTTCAGTGCTTTCTCAAGGACTTGAATCATGA
- Protein Sequence
- MNCRDVEVADCIMDLVAQEEKDTTTLSDSRDGTAKQTTTGIILKHNSSGNESNMPEANQFQAKESLITGFDGVGEHPYVCSFCQKRFASKASVDTHQLRAHNVNSDSALSCSKCGKLFTRRSALDVHLRIHSSDKPFQCEHCGKSFTQKVSRDIHIAKHTGKYNYRCSVCPKAFASQAKLNSHSFVHKTPRFTCELCGHGFVRQDTLIVHQRSHKSERPFQCSVCSQTFTSQSRLLSHNEIHREDHPYRCTSCHAQFKQKTGLAAHLRRQHNMKVSISNSNMESEQVIEHTPDLFTSSIDTAQITTPVESVQPELDDKNSACNVSQKKGLLCAHCGKKFHKKQSLKEHEMEPSFECNLCGKRFHRSDVYKHHMFLHTKERPFSCAHCGKAFASKTNLSTHLTIHSTSSQPALELQCDDCGRKFKHKNTYILHRKTHVGDFTHTCTTCGKKFMKKSHFEGHLRSHTSNRPFMCPTCGRRYKERKHYVEHARKSHPNNFSLASLFASIANEDGQIDHMADILCPAAPSLHQEDNPSGLNISSLPDQLQPTLVEISDVAASSSLDPGYLLNSQVNVNETSISMDTPMTNLEFSSLEPMLQEIEIPNTTQFLMSSNQPQIEKNTCEVVMPVNTMSLTVLSAEDTSSVLSQGLES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -