GBI_01124-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold5:3211451-3223162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00069 0.04 15.0 1.2 3 23 135 156 134 156 0.97 2 15 0.00047 0.027 15.5 3.0 1 23 161 183 161 183 0.97 3 15 0.032 1.9 9.7 0.4 5 23 193 212 191 212 0.93 4 15 0.052 3.1 9.1 0.2 2 23 266 287 265 287 0.93 5 15 0.00054 0.032 15.3 1.6 1 23 293 315 293 315 0.96 6 15 0.025 1.5 10.1 0.7 1 23 325 347 325 347 0.98 7 15 0.023 1.4 10.2 3.5 1 19 353 371 353 375 0.91 8 15 0.00033 0.019 16.0 0.1 1 23 381 403 381 403 0.98 9 15 0.00093 0.055 14.6 0.0 2 23 410 431 409 431 0.95 10 15 5.9e-05 0.0035 18.4 1.1 1 23 437 460 437 460 0.95 11 15 0.00065 0.038 15.1 3.1 1 23 466 488 466 488 0.97 12 15 1.4e-06 8.3e-05 23.5 4.0 1 23 505 527 505 527 0.98 13 15 0.00022 0.013 16.6 0.3 1 23 533 555 533 555 0.97 14 15 4.7e-06 0.00028 21.8 0.5 1 23 560 582 560 582 0.98 15 15 6.4e-05 0.0038 18.3 6.0 1 23 588 610 588 610 0.98
Sequence Information
- Coding Sequence
- ATGCACAAATCAAATCGGCTCTCTACAGATTCATTCACAAGACAACGAGATTCTTATGGATCAAATGATGAACATGAAGAAATTTTAAACTTGAATTTTCTTTTGTTGGCGAATCATGAAGGTGAAAATGTGTGTAAGAATACTGTTGAATTACAGTCTTTAACAAAACATGTAAATCAAGATTTTATGGAACAGGAAGAGAACGAAATTGAAGAATACTGTAGTCAAACTGCCGACAGAAGTGAAAAACCTAATTTTTCATACGATGTGAAAAATATTCGCGAAAAGACAGAAGAAAACCTTAACAATCAAGCTTTCCAAGTACATCAAGTATCGTACAGTGACTTAAACACTGAAGAAAATATGTCCAAGGCGAACGAAACCAATGACAAACTGAATGATTGCGAGTTTTGCAAAGTTAATTTCAAAAGTTCCACTATGCTGAAGAGACATATTACCACCATACACAACGGAAAACCTCACAAGTGCACATTGTGTAAGGCTACATTCAAAAGGAATGCTTTTCTGAAAAAACATGCCTTGGTTCACAGTAACGAAAAGCCCTATCATTACGATAAATGTGATAGAAGCTATAAAGAACTACAGTCTTTAAAAAGACACTGGAATAATAATCACAAAGAAATATACAATAATATTGACGCATCTCTTGGTTATCTAGAAAACAAATCTCTTCATAATACTAAAAAATCACCTCAAAAAAACATTTCTAGGGCTGGAATTTTTGTGAATAATAGAATTAAGCCAACTTTCAATTGTACAAGCAGAAAACAAATTACCTGTAAAAAATGCAATGCAGTAGTCACTACATTCGCATCTCTCACTGTCCATAATTACGTCCACTCTCCTAAGGGGTCGTACAAGTGCCCTATTTGCGGTGCTAAATTCAAGTATCTGTCTTCTCTGAGATTCCATTTCAGTACTCATGATGTAGAGAAAAATGGTGATAAATTTTATCGGTGCTATGTTTGCAATGACGAGTGCGAATCAGCTGAAAGTTTGAAAGTTCATATTTTAAAACACAAAACTGCAAAAATATACAGATGTCAGACTTGTGAGGCTACATTCAAAACGCCCCATGGCCTGATATGGCACTGTTATCGTCATACGGGTGAACGACCATATCAATGTCCGAAATGTGCTGCAGCATTCGACAGACCCCGACTTCTCTCAAGGCACAAATTAATTCATTCTGATGAGAAATCTCTGATTTGCGACGTATGTAAAGCTCCCTTCGTAACGGTATCAGGTTTGAAAAAACACATGGTAATCCATCAGGGCGATAACCCGTATCGATGTGAAGTTTGCAACGCAACATTTACTAAATCCTGGAGTTTGAAGATACATATGTATTATAGACACACTAGTAACAAACCACATAAATGCGAAATTTGTAACGCTAGATTTGTCTACAAATGGAGCCTCAAGCGACACAGTTTCACTCACTCAGAGAGAAAAACACAGAGTTCTCAAGTTCAGAAAACTGAGAAAAAATTTCAATGTCATGTGTGCGACAAGGTATTTAAGAGAAAATCAACTTACGAGACTCATCAAGTAACTCATACTGGTGAAAGACCTTATGAATGTGATCTATGTAAGAAAGCTTTTACGTTAAAGGCGACCTACGCGAAACATATAGAACTCCATACTGCAAAACCACATCAATGTGCAGAATGTGGAAAGAGTTTTGAAACAGAGGATAGTCGCGAGGCGCATATGAGGATCCACACTGTAGAAAGGTCCTATTCCTGTGATGTTTGTCGGAAGTCTTACTGTCACAAGTCCAGTTTAAATGAACACAGACGTATCCACACAGAGCAACCGTTGAATAAAACAGGTGCAAAAATGTTTACTTCGTCAACTAAACACCAACGAAGGGCGACTTTGTGA
- Protein Sequence
- MHKSNRLSTDSFTRQRDSYGSNDEHEEILNLNFLLLANHEGENVCKNTVELQSLTKHVNQDFMEQEENEIEEYCSQTADRSEKPNFSYDVKNIREKTEENLNNQAFQVHQVSYSDLNTEENMSKANETNDKLNDCEFCKVNFKSSTMLKRHITTIHNGKPHKCTLCKATFKRNAFLKKHALVHSNEKPYHYDKCDRSYKELQSLKRHWNNNHKEIYNNIDASLGYLENKSLHNTKKSPQKNISRAGIFVNNRIKPTFNCTSRKQITCKKCNAVVTTFASLTVHNYVHSPKGSYKCPICGAKFKYLSSLRFHFSTHDVEKNGDKFYRCYVCNDECESAESLKVHILKHKTAKIYRCQTCEATFKTPHGLIWHCYRHTGERPYQCPKCAAAFDRPRLLSRHKLIHSDEKSLICDVCKAPFVTVSGLKKHMVIHQGDNPYRCEVCNATFTKSWSLKIHMYYRHTSNKPHKCEICNARFVYKWSLKRHSFTHSERKTQSSQVQKTEKKFQCHVCDKVFKRKSTYETHQVTHTGERPYECDLCKKAFTLKATYAKHIELHTAKPHQCAECGKSFETEDSREAHMRIHTVERSYSCDVCRKSYCHKSSLNEHRRIHTEQPLNKTGAKMFTSSTKHQRRATL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -