GBI_19895-RA


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gryllus bimaculatus
Gene Symbol
-
Assembly
GCA_017312745.1
Location
Scaffold345:37534-65186[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.012 0.71 11.1 1.9 1 23 299 321 299 321 0.96
2 12 1.7e-05 0.00098 20.1 1.7 1 23 326 350 326 350 0.94
3 12 0.00013 0.0079 17.2 0.7 1 23 374 397 374 397 0.95
4 12 4.1e-05 0.0024 18.8 1.1 1 23 403 425 403 425 0.97
5 12 0.00015 0.0087 17.1 0.3 1 23 434 457 434 457 0.90
6 12 1.3e-06 7.4e-05 23.6 2.8 1 23 463 485 463 485 0.98
7 12 3.4e-05 0.002 19.1 0.3 1 23 491 513 491 513 0.92
8 12 0.00023 0.014 16.5 2.3 1 23 519 541 519 541 0.97
9 12 3.8e-08 2.2e-06 28.4 2.0 1 23 547 569 547 569 0.99
10 12 2.2e-05 0.0013 19.7 5.7 1 23 575 597 575 597 0.98
11 12 1.7e-05 0.00098 20.1 2.6 1 23 631 653 631 653 0.98
12 12 1.5e-06 9e-05 23.4 1.7 1 23 659 682 659 682 0.95

Sequence Information

Coding Sequence
ATGATGGAAGTACATTTATATGACTCAACATTTTGTAGATTATGTGGTGAAGAAAATTCGAATGGTGTTCTGTTATTTAAAAACGACGAATCCGATACTGATTTAAGCGGACTTGTAAATCGTTACCTTCCGTTCAAGGTATATGATGATGGCAAGCTGCCCAGAACCATTTGTCCAGGCTGTAATATTCAGTTACAGTCGACAGTTCAGTTTTTTGATTTGTTGGTTGATGGGCAAAAGCGAATTAGGGCCTTATGGAAAAATCAGTTAGAATATATGAGGAGAGCAGAAAAAGAAAGGCTGCGATCAGAAAATGAAGGATCTTCAGAACTTCTTATGACAACCACTACATCAGCCCATGATCCGAATGCATCGGATACTGAAGGAGAAAACAGAATTGTCATTCAAATAATGGCTGATGGATCTTTGTACTCCACGGATCATGAAATGACCCTGAAGATGGAAGGTCTTGACAAGCCGAGGAGGAAAAGAGGTAGGCCAAAGAAGGTGCCCCAACCAGAACCAGAACAGCCCCCACTACCAGCAGAAGAACCAGAGCCCTCAAAGGATGAAGAGCTTCCACCAGATGATGAACTGGATGAAGATGCAGATAAAAGGCGTAGACGGAAACGAAAGGCTCCCATAAGGTATCTGGAAGCAGTGAGAGGAAAGGAATTGGAAAGAATGTTCCGTGAAGAAGGTGTTATTGACGATGATGAACCAGATGATGGTGAAGATGATGAAGTGGAAGAAAAAGTTGCTGATGAACAGGATGTTGGAGAAGAGGTAATAGGTCATCTTGAAAATCAAGAAGGTCAAGACTTGGGTGAACTTGTAATAGTCAACAAGAGTAAAAGTCGGGGTCGACCACGTGGAAAGCGGAGAAAACATCGTTTTCAATGTGAGGTGTGTGGTCGTGGATTTCAACACAAAGGCCGGTACATCATTCACAAGAGTTACCATAAGGGTGTCAAGTATGAGTGCAGTGATTGTAATAAACGATTTACCAGTCGTGAAACCTTTGAACTTCATCAGAAGACAACTGGTCATTCTGGAGAAGGTATAATTGAAGGTCTTGAAGATGGAAAAGATGTTATGGAACTACCTGCCAAAAACAGATTCCCTTGCAGTCAATGTGACAAAACCTTTCAAACAAAACAAAGTTATGAGGTTCATCTCAAAGCCATTCATGAAGGCCAAAAACCATTCATCTGTGAAATTTGTAGTAAAATGTTTGCCTATCATAACAGTTTAAAAGCACACATGACTGTTCATGAGGAACAAAGAACAGAAAAGGGCTATCCCTGTGAAGTTTGTGGAAAGACCTTCAATCATCCAAGTTCAGTTATCTATCATAAAGAGGCAGAACACAACAATGGCAGAAGATTTGTGTGTAACAAATGTGGGAAAGGTTTCAAACACAAACAGCTCTTGCAGCGACATCAGCTTGTACATTCTGATAACAGGCCATTTGCTTGTAAAGTATGTGGTGCAACATTCAAGACCAAAGCCAATTTACTCAACCACCAGCCAACTCATACAGGCGAGAAGAAATATTTCTGTGAACTTTGTGGCCAGCAATTTGCTCATAAGACAAGTCTCACACTCCATTACCGATGGCACACAGGCCATAAGCCATACCAATGTCATGTTTGCAACAAAAGTTTTTCTCAAAATGGAAATCTGCAAGAACATCTTCGTATACATACAGGAGAAAAACCATATTGTTGCGATTACTGTGGTCGGAAATTCACAACTTCATCTCAGTTCAAATTGCATGTAAAGAGACATACTGGTGAGCGTCCATGGAAATGCGAGTTCTGTGCAAAGTCCTTCTTGCACAAGGACACTTGGAAGTGTCACACCCGCCGTCACAAGGGGGAGCGACCTTTTCAATGTCATTACTGTGCCCGCAGCTTCACAGAACAATGGGCCCTCAAGAAGCACCTGCGTTTGCATACAGGTGAAAAGCCTTATGTGTGTAATGTATGCGGGAAAGCATTTGCTGACTGTTCTAATCTCACAAAGCATAAGAAGGGGAAGCATCGAGATTTAAAGGAAGAAGAAAATCCTGTTTCTCAAGACACTGTACCAGTTGATGGAACAGTATGGAATATCATTCGCAGCCATTTGTCAAATGAGGCAGCAAGAGGGGAAGGCACGGAGGATGATGGTACTGGAGGGGAGGGTGTCAAAAAAGAGGATGACATTCAACAAATTATTTATGTTACATACCAAGATCCAGAGGATCCTGGTGAGGCAAGAACCTTGCATATTGTGGATGGCATCCAGGAAGAGGCTGCACCTACATTACAGGAAGACAAAAGTGATCCTCTGAGTCAAATTACTGCAGAAGTTCAGCCTGAAGAAGTAGTGGGTCCAGAACCAGACCCCACACAACTTCAGCTAGACCAACTGTCTCAGACTGCAACTATCCAGCTGGAACCACAGCTCCATGTTACAGATCAAGATGGAAATGCTATTCAGTTTACCATCCAGGATGGGATTCCTACTGGTAATGTCCAGTCTATAGAAGTTGCTGGTACAAATTTTCATTTAACCTCAGACGGACAAGCCTTTACTGCAGGTCTTGCACCACATCTACCAACTGTGACCGAGGGTGACTCGGAGGTTCCTGATATTCCAGGTGAAAATCAACAAGTTAGTGCTCAGGCTGTGACAGGTGACATGTTGGCTCTTGTGGGCAGTGATCAAACTCTGGAACTTGTGACACCTGATGGACAAAAAGTTTATAGGTTTGTAACTGCATACAATGTGGATCAGCAGCAATTGGCAGCTGATTACTTATCAACTACCTGA
Protein Sequence
MMEVHLYDSTFCRLCGEENSNGVLLFKNDESDTDLSGLVNRYLPFKVYDDGKLPRTICPGCNIQLQSTVQFFDLLVDGQKRIRALWKNQLEYMRRAEKERLRSENEGSSELLMTTTTSAHDPNASDTEGENRIVIQIMADGSLYSTDHEMTLKMEGLDKPRRKRGRPKKVPQPEPEQPPLPAEEPEPSKDEELPPDDELDEDADKRRRRKRKAPIRYLEAVRGKELERMFREEGVIDDDEPDDGEDDEVEEKVADEQDVGEEVIGHLENQEGQDLGELVIVNKSKSRGRPRGKRRKHRFQCEVCGRGFQHKGRYIIHKSYHKGVKYECSDCNKRFTSRETFELHQKTTGHSGEGIIEGLEDGKDVMELPAKNRFPCSQCDKTFQTKQSYEVHLKAIHEGQKPFICEICSKMFAYHNSLKAHMTVHEEQRTEKGYPCEVCGKTFNHPSSVIYHKEAEHNNGRRFVCNKCGKGFKHKQLLQRHQLVHSDNRPFACKVCGATFKTKANLLNHQPTHTGEKKYFCELCGQQFAHKTSLTLHYRWHTGHKPYQCHVCNKSFSQNGNLQEHLRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKSFLHKDTWKCHTRRHKGERPFQCHYCARSFTEQWALKKHLRLHTGEKPYVCNVCGKAFADCSNLTKHKKGKHRDLKEEENPVSQDTVPVDGTVWNIIRSHLSNEAARGEGTEDDGTGGEGVKKEDDIQQIIYVTYQDPEDPGEARTLHIVDGIQEEAAPTLQEDKSDPLSQITAEVQPEEVVGPEPDPTQLQLDQLSQTATIQLEPQLHVTDQDGNAIQFTIQDGIPTGNVQSIEVAGTNFHLTSDGQAFTAGLAPHLPTVTEGDSEVPDIPGENQQVSAQAVTGDMLALVGSDQTLELVTPDGQKVYRFVTAYNVDQQQLAADYLSTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00872466;
90% Identity
-
80% Identity
-