GBI_17620-RA


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gryllus bimaculatus
Gene Symbol
Snai1
Assembly
GCA_017312745.1
Location
Scaffold234:1005178-1011932[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00021 0.012 16.7 0.1 1 23 293 315 293 315 0.96
2 12 4.9e-05 0.0029 18.6 1.6 1 23 323 345 323 345 0.99
3 12 5.8e-05 0.0034 18.4 0.4 2 23 353 374 352 374 0.97
4 12 6.4e-06 0.00038 21.4 0.7 1 23 380 402 380 402 0.98
5 12 5.7e-05 0.0034 18.4 0.2 1 23 409 431 409 431 0.98
6 12 6.3e-05 0.0037 18.3 0.0 1 23 437 459 437 459 0.94
7 12 5e-05 0.0029 18.6 0.3 1 23 465 487 465 487 0.98
8 12 1.4e-06 8.5e-05 23.4 1.2 1 23 493 516 493 516 0.96
9 12 3.3e-05 0.002 19.1 0.7 1 23 522 545 522 545 0.95
10 12 7.7e-05 0.0045 18.0 3.3 1 23 551 573 551 573 0.99
11 12 2.3e-05 0.0013 19.7 0.5 1 23 579 601 579 601 0.97
12 12 0.00059 0.035 15.2 0.1 1 23 607 631 607 631 0.94

Sequence Information

Coding Sequence
ATGTCATCCCCAAAACATACCATTTATATAGAGGTTAAACAAGTTCGAGATGTGACTGCAGACAATGAAAAAGAGCAGTCATCCACTCCTAAGAATACCAATTGTCTAATATGTAATAGTCGTTTAGGAGTCTCATCGCGTAATAGTTGTGAAATTTTTCACAAGACACTGTTAACATCATCAGAAAAGCCAGTTTCAACCTTAATCGGAACGTTTTTAGAGCAAGAAGTTACTGAAGATTCTGTGCATAGTCATGTAATATGTAAGAAGTGTTATAAACTCTTAAATGAAGCTGATGAAATAGAATGTAGGCTTTCAGAAATCAAGTTAGATTTAGTCAATAATTATAAAAGAACATTGAAAATTCAGACTGAAGGTGAGAAAGAAGTACTAGATGAAGACGATGATCGTAAACTCCCACTGGGATCAGAGGATGGCAATGTTGTGAAGAGAGGTCGTAAGAAAACTCTTCCCAAAAAAATTAAATCCCCTCCTAACAGCGAAGAAGATTATGATCAGAAGGAGAATACCTTGTGTGAAGTTGAGATGTCCGACCATGAAAGTGATTATGCAGAGGCTGCAAATCAAGAGGATGGTGGTGGGGGTGAAGGAGAGGAGGATGGTTCCAGAGCACTTATGAAAATTAAGGAAGAGCCAGAAGATGATGATGATTCCAGAGACACTACTAAACGTAGAGTCGGAAAGCTGTCAGCTAAGAAAAAAGCGGGAGATGCCCAGGAAGGCGAGGCTCCAGAGAAAATTATATGTCGAGAGGGTACAGACTTCACTTGCTTGTTGTGCGTTGCAGAAGCAAAGGTTATGGGGGACATGAAGGGCATTGTGAATCACATGAAAAGCGTACACAACATACGTGTGTATGTATGCGACATATGCGGGATGGATTTTAGAAAACGTAATGAACTTTCAGCTCATTTAGACGAACATGTGGCTACAGAGGAAGGCGATTTTCAGTGTGAGGTTTGCAATAGAATTTTCAGTAACTTACGCCTGTTTCGTGTTCACAAAAGGATGCACTATCCTCAGTCTAAATTGTGGACTTGTGAGACCTGTGGAAAACGTTACAGTTCACGAAATCTTTTGGATGAGCACATCAACACCCACACAGGGGTCCGCCCCTATGCATGTGAAGTGTGCGGTAAAGATTTTGCTTCCAAGTACACTTATAAAGCTCACACAAAAACACACGAAGTGAGACCGAGACCGTTTTCATGTGGTGAATGTGGTAAAACTTTTTTGAGTGCTCAGAATCTTGCACAGCATGAACGCACTCATACAGGTCTTCGAGATTACGTCTGCGATCAATGTGGCAAAGCCTTTGGAACTGCTCGGAACTTGGAGGTTCATTCAGTGGTTCATTCTGGATATAAGCCTTTCATTTGCCGAACTTGTGGCAAGGCATTTGCTCGGAAAGCCGAGATTCGAGATCATGAACGTACCCATACTGGTGAGAAACCATATCAGTGCGAGTTCTGTGGGGCAACGTTTAGTCAGCGCAGCAACCTGCAATCACATAAGAGGGCAACCCACTACCAAGACAAGCGTTATAAGTGCACAGAATGTGGGAAAGGTTTTAAGCGGCGGCGTTTACTAGACTATCATGTCAAAGCTGCCCATACAGGCGAGCGCCCTTACAAATGCACTACCTGTGAAGCAACTTTTGTTTATCCTGAGCACTTTAAGAAACATCGCCGCATTCACACGGGAGAGAAGCCCTTCCAATGCGAAGTGTGTGGGAAAGCATTTAACAGTCGAGATAACCGAAATGCCCATCGTTTCGTTCACAGTGACAAAAAGCCTTACGAATGTCTGGTCTGTGGCATGGGATTTATGCGCAAACCTTTGTTATACAATCACATGCAGACACAAGGGCACATGAATGACACCATTGTAGTTAACCAGCCTCGTTTGACAACTGAAGAAGATATTTTACAAGACCCTGAAGCTCAGGAAATGGTCCCCGAAGCCACAGAGGTGGAGATGACTATTGTGGATGGCCTCGGTCAGCACCAAGATCAAGAAACCAAGGTTTATATTGCAGACTTGAAGGATCACGTTATTATACAACAAGAAGGTGATAGCACTTACGCCGAAAAAACAGTAATGGTGGGTGATGCGGACATAAAAAATGCAGATGGTCAACACATTGTACAAGAAGCTGTGGAACATCTCATAATAGATGGCGCTGTTCATTTTGCTGACCCCAGTGAGTTGGCCAGCCTGCACAATGAAATAGGATCTATTGCTGAAATCACCACTACTTCTAGCTTTGGGCGAGGCGGAGAGGGTCGCCATGCTCTGGTGGTGCCTGCAACACCGAGAGTTCTCTCTGCACAAGGCTACGAGGATGGTCAAAACGGATTACCTGAAGGCACTGTTACTACATTAGCACCATCACAAACCATCCAGAGTCCCGGTGGACCTGTTCATTTGGTGCAGATTCGCATTCCGAGAGAGACTGCATCTAATGCTGCATGGGTAAATATTGTTGAGAACCCACAGTGA
Protein Sequence
MSSPKHTIYIEVKQVRDVTADNEKEQSSTPKNTNCLICNSRLGVSSRNSCEIFHKTLLTSSEKPVSTLIGTFLEQEVTEDSVHSHVICKKCYKLLNEADEIECRLSEIKLDLVNNYKRTLKIQTEGEKEVLDEDDDRKLPLGSEDGNVVKRGRKKTLPKKIKSPPNSEEDYDQKENTLCEVEMSDHESDYAEAANQEDGGGGEGEEDGSRALMKIKEEPEDDDDSRDTTKRRVGKLSAKKKAGDAQEGEAPEKIICREGTDFTCLLCVAEAKVMGDMKGIVNHMKSVHNIRVYVCDICGMDFRKRNELSAHLDEHVATEEGDFQCEVCNRIFSNLRLFRVHKRMHYPQSKLWTCETCGKRYSSRNLLDEHINTHTGVRPYACEVCGKDFASKYTYKAHTKTHEVRPRPFSCGECGKTFLSAQNLAQHERTHTGLRDYVCDQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYQDKRYKCTECGKGFKRRRLLDYHVKAAHTGERPYKCTTCEATFVYPEHFKKHRRIHTGEKPFQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQTQGHMNDTIVVNQPRLTTEEDILQDPEAQEMVPEATEVEMTIVDGLGQHQDQETKVYIADLKDHVIIQQEGDSTYAEKTVMVGDADIKNADGQHIVQEAVEHLIIDGAVHFADPSELASLHNEIGSIAEITTTSSFGRGGEGRHALVVPATPRVLSAQGYEDGQNGLPEGTVTTLAPSQTIQSPGGPVHLVQIRIPRETASNAAWVNIVENPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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