GBI_01870-RB
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- su(Hw)
- Assembly
- GCA_017312745.1
- Location
- Scaffold8:1899874-1917899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.24 14 7.0 3.9 5 21 33 49 30 50 0.93 2 13 3.1e-07 1.8e-05 25.5 1.2 1 23 158 181 158 181 0.98 3 13 4.9e-05 0.0029 18.6 0.3 1 23 187 209 187 209 0.98 4 13 5e-05 0.003 18.6 2.9 1 20 215 234 215 236 0.95 5 13 2.5e-06 0.00015 22.7 1.0 1 23 247 269 247 269 0.97 6 13 5.7e-05 0.0033 18.4 0.0 1 23 279 301 279 301 0.96 7 13 3.2e-05 0.0019 19.2 1.5 1 23 307 329 307 329 0.98 8 13 9.3e-05 0.0055 17.7 0.6 1 23 335 357 335 357 0.99 9 13 4.4e-05 0.0026 18.8 2.7 1 23 363 385 363 385 0.93 10 13 0.00057 0.034 15.3 2.2 1 23 391 414 391 414 0.96 11 13 1.7e-05 0.00099 20.1 0.4 1 23 420 442 420 442 0.94 12 13 1.2e-06 6.8e-05 23.7 1.1 1 23 448 470 448 470 0.98 13 13 1.2e-06 7.3e-05 23.6 2.0 2 23 477 499 477 499 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCAGAGTCATCAAGATCAGAAACAAGAAGACAAGCAATGTTGAATGAGAGGAATAAAAAGGTTGCACAAGAGACTCCAACATATACTTGCCACTGTCAGAGAACATTTCATAGTAATACTGGTCTGAAGCGGCACCAAAAATTTTGTTCAGAATCTAATGGAGGATCAGGGAGTAGCCGTAGTACAAGATCTCGTGATCATTTGATAAAAATGGAATCTTTAGAGAATGTGGAGAACGTGGATGATCCTGACACTTGTGAGGAAACTTCGCAGGAAAGTTTAAGTGATGAGCCTAATTCTAATAATGAAAATGAAGAGAATTCTAATAACAATGAACATTTGGAAGATCAAATACAAGATGTGATCATGGATAAAGTTAATGAATTAATTGATCAAACATCATTGGGTCCAGGGAAATGTCACTGTTGTGGTGAGGATTTGGATACTGCTCACTTGGGTGGGGATTATCAGTGTGTGGATTGTAATAAAAGCTTCAAACTCAAATCTAGCCTTGAACGTCATCGACGTGTAATTCATATGGAAGGAGAAACTTATGAATGTCCAGAATGTGAAGCACGTTGTCCAGACAAGGGAACTCTAGCCCGACATATGTATACTCATACTGGTTTAAAACCTTATTCTTGTTCAAGATGCAAGAAACAATTTAGTAGAAAGTATCACTTGGAACGTCATGTTTTACAAACTGGATGTGATGGTAATCCTAAACCAACTCATCCTTGCCAGGTCTGTGGGCGTTTATTTAGTCGCAAAGATAATTTAAGAGAACACCTTAGAGCCCATGCTGGCCAAGTGAAACGAAAAAAAAGGTACCTTTGTGAAATTTGTCAAAAAGAGTTCCCAGGAGCTGCATTATTGCAAATGCATATGAGAATCCACACTGGGGATAAGCCATATTTTTGTGACTTTTGTGAGAAGACTTTTCCATCCAGTGGAGCTATGAAGAAACATCGCCGAATGCACACTGGTGAAAGACCTTATGAATGCAAGGAGTGCTTTGCTAAATTTGCTGCCAAAGAAACCCTTAATCGGCATGTAAGAACTCACACTGGCGTGAAGCCTCATATTTGCCAGTTTTGTGGAAAAAGCTTTATCCAAGCATCCCAATTGAGAGCCCATGTTTTTCATCATACAGGGGAGCATGGATTTACATGTGAGCACTGCAGTAAAGCTTTCAATCGCCGTGCACGTTTACTCATGCACGTAAAGTACGTGCATGAAGGGGCTAAGCCCTATGAATGTGAGCAGTGCAGCAAAACATTTGTGAGGAAAGAAGATTTGGCACGACATAACATATTGCATTCTGGAATAAAAGCCCATAAATGCCCCATCTGCCAGAAGGCATTTGCTATGAAGTCATCATTGAAGATACATCTTTTGACGCATACTAAGGAACCACCTCGCTCATGTGATGAATGTGGGCGTGCATTTATTCGTCAGGATTGCTTGCTACGTCATATGAGAACAAAGCATAGAGATATGCTTGAAGAAATTCTTGCAGAAGCTGAAAAGAAGAAGTTGCAGCAACAACTGCTTGCTGCCGCCACAGATGCCAGTGATTCTGCTCCTATCTCATCTGACCCAGGGACATTGAGTGATAGTGCACTTGCAGATTCTATACGTGAACTGCTTACTTTACTTGTTGATGAAGCTACCTTAAAAGTATTTGGATGGCCAGATGCTACTGTGGATCAACTATTAGAAGCAGTCATTCGGCGATGTGGTCACCAACCAGTACCTTCAGAGGATCTTGCATTTACAGATAGACTCCGTGAAAATGCAAAATTATTGTTCACTGTTGTTATTGATGATTCAGCTGTAAAAACACTTCTGAACAATCAAACTGTTGATGAAGTTATACTTCATGTTCTGAGATTGGCAAAATCATGA
- Protein Sequence
- MAAESSRSETRRQAMLNERNKKVAQETPTYTCHCQRTFHSNTGLKRHQKFCSESNGGSGSSRSTRSRDHLIKMESLENVENVDDPDTCEETSQESLSDEPNSNNENEENSNNNEHLEDQIQDVIMDKVNELIDQTSLGPGKCHCCGEDLDTAHLGGDYQCVDCNKSFKLKSSLERHRRVIHMEGETYECPECEARCPDKGTLARHMYTHTGLKPYSCSRCKKQFSRKYHLERHVLQTGCDGNPKPTHPCQVCGRLFSRKDNLREHLRAHAGQVKRKKRYLCEICQKEFPGAALLQMHMRIHTGDKPYFCDFCEKTFPSSGAMKKHRRMHTGERPYECKECFAKFAAKETLNRHVRTHTGVKPHICQFCGKSFIQASQLRAHVFHHTGEHGFTCEHCSKAFNRRARLLMHVKYVHEGAKPYECEQCSKTFVRKEDLARHNILHSGIKAHKCPICQKAFAMKSSLKIHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQQQLLAAATDASDSAPISSDPGTLSDSALADSIRELLTLLVDEATLKVFGWPDATVDQLLEAVIRRCGHQPVPSEDLAFTDRLRENAKLLFTVVIDDSAVKTLLNNQTVDEVILHVLRLAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -