GBI_20406-RA


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gryllus bimaculatus
Gene Symbol
-
Assembly
GCA_017312745.1
Location
Scaffold390:4371-23579[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 4e-06 0.00024 22.0 4.3 1 23 128 150 128 150 0.98
2 14 2.6e-06 0.00016 22.6 0.2 2 23 157 178 156 178 0.97
3 14 5.9e-06 0.00035 21.5 0.2 1 23 184 206 184 206 0.98
4 14 6e-06 0.00035 21.5 0.5 2 23 213 234 212 234 0.96
5 14 5.9e-07 3.5e-05 24.6 3.8 1 23 240 262 240 262 0.98
6 14 1.6e-06 9.5e-05 23.3 1.6 1 23 268 290 268 290 0.99
7 14 2.7e-06 0.00016 22.6 3.7 1 23 296 318 296 318 0.99
8 14 2.1e-06 0.00012 22.9 2.4 2 23 325 346 324 346 0.97
9 14 2.4e-07 1.4e-05 25.9 1.4 1 23 352 374 352 374 0.99
10 14 2.9e-05 0.0017 19.3 1.5 1 23 380 402 380 402 0.99
11 14 1e-05 0.00061 20.7 0.3 2 23 414 435 413 435 0.97
12 14 3.7e-06 0.00022 22.1 1.9 1 23 441 463 441 463 0.98
13 14 6.6e-08 3.9e-06 27.6 1.9 1 23 469 491 469 491 0.99
14 14 2.2e-05 0.0013 19.7 1.8 1 23 497 519 497 519 0.98

Sequence Information

Coding Sequence
ATGGATGAACAAGAACTCGTATTAGCTGAAAGCGTATTTCAAGTAGAGGAGGAAGTACATGAAAGAAGTACTTTGAAGAAAGTGTTGAAGGATGAAGATGATGAAAGGTCTTCATATATTAAAAAAGTGTTGTCAAATACCTCAACTTCTGAGTTTGTGATGCAGGACCCTTTGGTGATGTGCGTGAATGGTTTTCCCAGAGCTGGTGAAGAGATGGAAGAACGTTCCTGTTCCTCTGAAGGCGCCGCAGCAGCCTGTTCCAGCGAGGCACCCTCGCCGGCGAGAAGCCCCCCCATCGGCGAACGCCAGAAGCATTCGCTCAGGGGGCGTCTCATAGGCCACATGGACCACATGGAGAGCGCCGCGGACGAGGAGAGCCGCTTCCAGTGCTCGCTCTGCGACACGACGTTCGCGCACGAGCACAGCTTGAAGCGGCACATGCGCGCCCACGCCGGCGAACGGCGCTTGGAGTGCCCCATCTGCCACAAGGGCATTGTGGATAAGGGCGCGTTGACGAGGCACATGCGAACCCACACGGGCGAAAGACCATTTGAATGTTCGGTCTGCCAGAAGGGATTTGCGGAAAGAAACTCCCTAAATGTGCACATGCGAATCCACACAGGGGAAAAACCGTTGGAATGTTCTGTCTGCCAGAAAAGCTTTTCGTATTTGACGTCTTTGAATAGGCATATGGTGATCCACACTGGCGAACGACCGTTTGAATGTTCTGTCTGCCAGAAAAGTTTCTCACAAAGGGGCCATTTAAATACTCACATGCGGTTCCACACTGGGGAAATGCCGTTTGAATGTTCTGTCTGCCAGAAAGGTTGTACAGATAAAGTAGCTTTAATGAGACACATGCGGACACATACAGGAGAAAAACCATTTGAATGTTCCGTGTGCCACAAGAGTTATTCAGAAAGAAAAACTTTAAAGGTTCACATGCGTACCCACACAGGGGAAAAACCTATGGAATGTCCTGTGTGTCAGTCAAGCTTCTCACACATGTCATCTTTGAAAAGGCACATGCGCACACATACCGGCGAAACACCATTTACTTGTTCTGTTTGCCAGAAGGGATTTACTGAAAGAGCGAATTTGAAAACGCACATGCGGACACACACAGGCGAAAAACCATTTAAATGTTCTGTCTGTCAGAAGGGTTTTTCAGAAAAGAAAAAGGTTCTTATACACATGCGAACTCACAGTAAAAAGTCCCTCACAGGGGGTAAACCATTGGAATGTTCTGTCTGCCAGACCAGTGTACCAAATTTGTCAACTTTGAATAGGCACATGCGAACACACACAGGCGAAAAGCCATTTGAATGTTCTGTTTGTCAGACGAGCTTCCCACATTTGTCCTCTTTAAATAGGCACACGCGGATCCACACTGGCGAAGTACCTTTTCAATGTTCTGTTTGCCAAAAGGGTTTCAAAGAAAGAGGCAATTTAAAAAGGCACATGCGGACTCACACAGGCGAAAGACCGTTTGCGTGTTCCATTTGTCATAAAGCTTTTTCATACAGAGGAATTTTGAATACCCACATGCGGACTCACAAGGGAAAGAGAGTTTGA
Protein Sequence
MDEQELVLAESVFQVEEEVHERSTLKKVLKDEDDERSSYIKKVLSNTSTSEFVMQDPLVMCVNGFPRAGEEMEERSCSSEGAAAACSSEAPSPARSPPIGERQKHSLRGRLIGHMDHMESAADEESRFQCSLCDTTFAHEHSLKRHMRAHAGERRLECPICHKGIVDKGALTRHMRTHTGERPFECSVCQKGFAERNSLNVHMRIHTGEKPLECSVCQKSFSYLTSLNRHMVIHTGERPFECSVCQKSFSQRGHLNTHMRFHTGEMPFECSVCQKGCTDKVALMRHMRTHTGEKPFECSVCHKSYSERKTLKVHMRTHTGEKPMECPVCQSSFSHMSSLKRHMRTHTGETPFTCSVCQKGFTERANLKTHMRTHTGEKPFKCSVCQKGFSEKKKVLIHMRTHSKKSLTGGKPLECSVCQTSVPNLSTLNRHMRTHTGEKPFECSVCQTSFPHLSSLNRHTRIHTGEVPFQCSVCQKGFKERGNLKRHMRTHTGERPFACSICHKAFSYRGILNTHMRTHKGKRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-