GBI_20410-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold390:112084-140131[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0057 20 5.9 3.1 13 40 155 179 143 182 0.77 2 13 0.03 1.1e+02 3.6 2.3 6 39 177 206 174 210 0.72 3 13 0.02 70 4.2 2.0 17 32 215 229 204 239 0.75 4 13 0.0048 17 6.2 1.3 15 41 241 264 232 266 0.80 5 13 0.0045 16 6.2 2.4 13 41 267 292 260 294 0.76 6 13 0.00099 3.5 8.4 1.5 14 41 296 320 288 322 0.81 7 13 0.01 36 5.1 0.7 17 32 327 341 321 349 0.79 8 13 0.0021 7.5 7.3 1.0 8 29 347 367 342 379 0.76 9 13 0.0034 12 6.7 0.6 13 39 379 402 370 406 0.70 10 13 0.006 22 5.8 1.0 15 41 409 432 401 434 0.84 11 13 0.017 61 4.4 1.4 17 32 439 453 432 461 0.79 12 13 0.006 21 5.9 2.6 17 40 467 487 457 490 0.79 13 13 0.0058 21 5.9 0.8 14 31 492 509 484 517 0.74
Sequence Information
- Coding Sequence
- ATGGCGACGGAAAAGACAGATATTGTAGCGGCCAGGGTTATAAAAGTGGATCAGATCAAAGAAGAGCCAGAAGAGAAGAAAGAAGACTATTGCTGGAATTCCATTGCAAAAGATGAACCCAAAGCCTTACAGCATTCTGTCAAAGAAGAAGACGATGTTGATGAGGTGTTGGACCCTCCACTTGCTGTGTATGTTCAGCCAATGGAGGAGCAGCAAGGAGGCTGTATTGAAGAGACGAAGGATCCTCTTGCATCCTGCTGTGATGGTGCTTCTATTGCCACAATAAAACAAGAGAGCACTTTGTGTTCCCCAGTAGATGAGAGTTATTCATCAGAGAAAACCACTATCCAGACACAAGAAAACCAAAGTGCAGACTTGGTTTGCATCCCTAGGAGTAGCTCCAGCAACTATGACCACAATAATGCACACCACAAGGACGCGCTTCCAAACTCGACCATGTATAAAGGCAACCATTTTAAGTGTTCCATTTGCAGTAAGATGTTCAGCAGAAAGGGGACGTTGCATAGGCACGTGCGCACCCACACTGGTGAGAAACCTTTCCAGTGTTCCGTCTGTGAGAAGACCTTCACTTTAAAAGGGACCTTGAATGAACATATGCGCACACACACTGGTGAGAAACCTTTCCACTGTTCTATCTGTGAGAAGACCTTCAATCAAAAAGGAACATTGGATATGCACATGCGCACCCACACTGGTGAGAAACCTTTCCAATGTTCCGTTTGTGAGAAGACCTTCAACCAAAAAGGAAACTTGGATAAACATATGCGCACTCACACTGGTGAGAAACCGTTCCAGTGTTCCATCTGTGAGAAGACCTTTACTGTAAAAGGAACCTTGGATAGGCACATGCGCACCCACACTGGTGAGAAACCTTTCCAGTGTTCAGTCTGTGAGAAGACCTTTGCTGAAAAACAAAATTTAAGTGAGCACATGCGCACCCACACTGGTGAGAAACCTTTCCAGTGTTCTATCTGCGAGAAGACCTTCACTGTAAAAGGGACCTTGAATGATCACATGCGCATCCACACTGGTGAGAAACCTTTCTACTGTTCCATATGTGAGAAGACGTTCAATCGAAAACGAATATTGGATAAGCACGTACTCACTCACACTGGTGAGAAACCTTTCCAGTGTTCCATCTGTGAGAAGACCTTTGCAGTAAAAGGGACCTTGAATGAGCACATGCGCACTCACACTGGCGAGAAGCCTTTCCAGTGTTCCATCTGTGGGAAGTTCTTCACTGTAAGATCGAACTTGAATGAGCACATCCGCACTCACACTGGAGAGAAACCTTTCCGGTGTTCCATCTGTGAGAAGACCTTCATTCGAAGAGGAACATTGAATGAGCACATGTGTACCCACACTGGTAATAAACCATTTCAGTGTAACGTCTGTGAGAATACCTTCAATCGAAAAGGAAGGTTGAATGAGCATATGCGCACCCACACTGGTGAGAAACCTTTCCAGTGTTCCATCTGTGAGAAGATCTTCGCTCAAAAAGGAAGCTTGAATGAGCACATTCGCTCTCACACTGGTGATAAACCGTTTCTGTTTTCTAAGAGGGCTCACTAA
- Protein Sequence
- MATEKTDIVAARVIKVDQIKEEPEEKKEDYCWNSIAKDEPKALQHSVKEEDDVDEVLDPPLAVYVQPMEEQQGGCIEETKDPLASCCDGASIATIKQESTLCSPVDESYSSEKTTIQTQENQSADLVCIPRSSSSNYDHNNAHHKDALPNSTMYKGNHFKCSICSKMFSRKGTLHRHVRTHTGEKPFQCSVCEKTFTLKGTLNEHMRTHTGEKPFHCSICEKTFNQKGTLDMHMRTHTGEKPFQCSVCEKTFNQKGNLDKHMRTHTGEKPFQCSICEKTFTVKGTLDRHMRTHTGEKPFQCSVCEKTFAEKQNLSEHMRTHTGEKPFQCSICEKTFTVKGTLNDHMRIHTGEKPFYCSICEKTFNRKRILDKHVLTHTGEKPFQCSICEKTFAVKGTLNEHMRTHTGEKPFQCSICGKFFTVRSNLNEHIRTHTGEKPFRCSICEKTFIRRGTLNEHMCTHTGNKPFQCNVCENTFNRKGRLNEHMRTHTGEKPFQCSICEKIFAQKGSLNEHIRSHTGDKPFLFSKRAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00759468;
- 90% Identity
- iTF_00759468;
- 80% Identity
- iTF_00759468;