GBI_19109-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- ttk
- Assembly
- GCA_017312745.1
- Location
- Scaffold302:731439-748111[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00017 0.23 11.9 0.1 1 35 208 242 208 248 0.92 2 4 1.6e-12 2.2e-09 37.5 0.0 2 39 259 295 258 299 0.93 3 4 0.021 28 5.2 0.0 20 39 331 350 319 356 0.82 4 4 2.1e-13 2.8e-10 40.4 0.0 4 38 376 410 373 417 0.92
Sequence Information
- Coding Sequence
- ATGGGTAGTAAGGTGCAGCATTATTGCCTAAAATGGAACAATTATCAGACTCACATTGCCGATATATGCTTCCAGTCTCTGGAAGCGGGATCTATGGTTGATGTTACTTTGTGTGCTGAGGGTCAATGTATCCACGCTCATCGTATTGTTTTGTCAGCTTGTAGTACATATTTTCAGAACATTCTGTCAAATTCAATGGAAGTTCATCCATACATCATACTCAGTGATATGAGTTACGAAGATATTAAATGCATCATAGAATTTGTTTATCGTGGTGAAATTAGTCTTACTGCAGATCGCTTCACCTCTGTGCTGAAGACAGCAGAAGATTTGCGTATAAGTGGATTAATGGAGGTTGGTAATTATTGGCCAGATGTAAGCAGTGAAGACAGCAAAGCAATGACATGGGAAGTCTGGGATGCAGTTGAAGAACCAATGGATACATGTACTGATTCTCCAAGTGTTAGTGTTTATGTTGACCAATCTGATGGTTCTCTCCAGGCTCCTCTTATTGATGCAGTAACTGTGCAAGATCCAGTTGAAGTGCTAGTCATTACTGAGAAAGATCCTGTTCCAGGTAAGCCAAGGAAACGAAAGAGAGATCCTTCAAAAAAAGATTACACTGAAGAAACTTTGACAGCTGCTCTTCAAGATTTGAAATCTGGGAGGTCTTTATTAGAAACCTCAGCTGCTCATCACATACCTCGTTCAACTTTGTACGTACGAGCACGAAGTCAGAGCATTCCAATTGTACCATCCAGGCAGGATCACCCAAGGGAGAAGATTCAAGCAGCTGTGCAAGCTGTTTCTGAAGGCGCCAGTTTACAGCAGGCATCAAAATTGTTCAAAATACCAAAGACTGTTTTATGGCGACGGGTTCAAAAAGAAGTGGGGAATTATTCTGGGAATAAACGTGGCAAACCTCGAGAGTCATACGGTTTTGAAAAAAAGAGGGCAGCTATAATGGCTTTGGAGAGGGGAGAGAAGTTATCAAAAGTATCTTCTCAGTACCAGATTCCTAGAGCTACCCTGTCAAGGGAAAAAACTCGACTTGTTGAGTCAGGCAGGTTACCCTGGACAAGTCGGAAGAAACGCCAGTCTGAACCAAATGACTATAAAGAACTACGCCTCAATGAAGCAGTCGCTGCATGTAGAGAAGGAAAAATGTCACAAGCATGTGCTTCTCAAAGGTTTCAGGTTCCAAAAACAACAATTTGGAGAAGATTAAAAGATGTTCGAACTGCAGAAAACACCCCTTCTATTGTTCGGGAGAAAACTGATGGAAATGTTCAAGCTCGTGCATCCCATGAAAATGTTTGTCCTGTATCTCAACTTCAAGAGCAGCAAGTGTTCTCATTTTCTGAAGTGTCATCTCATATTCCTGTTACATACATGGATGAATCAAATTTTACAGACTCCTCTTTGATTATTCTCACATCAAATCCAGAAAGCGAAATTGCCTTGCAAGAGAACAGTCAGCTTATAATAGGATCGGATGTTCCTTCTAATTGTACTGAAGCAAGAGACTGTCAAGGAGTTGCTCGTTGCCAAATGTCAGAAAATTCAGAGTATGCAGCAAAGTGTCCATAA
- Protein Sequence
- MGSKVQHYCLKWNNYQTHIADICFQSLEAGSMVDVTLCAEGQCIHAHRIVLSACSTYFQNILSNSMEVHPYIILSDMSYEDIKCIIEFVYRGEISLTADRFTSVLKTAEDLRISGLMEVGNYWPDVSSEDSKAMTWEVWDAVEEPMDTCTDSPSVSVYVDQSDGSLQAPLIDAVTVQDPVEVLVITEKDPVPGKPRKRKRDPSKKDYTEETLTAALQDLKSGRSLLETSAAHHIPRSTLYVRARSQSIPIVPSRQDHPREKIQAAVQAVSEGASLQQASKLFKIPKTVLWRRVQKEVGNYSGNKRGKPRESYGFEKKRAAIMALERGEKLSKVSSQYQIPRATLSREKTRLVESGRLPWTSRKKRQSEPNDYKELRLNEAVAACREGKMSQACASQRFQVPKTTIWRRLKDVRTAENTPSIVREKTDGNVQARASHENVCPVSQLQEQQVFSFSEVSSHIPVTYMDESNFTDSSLIILTSNPESEIALQENSQLIIGSDVPSNCTEARDCQGVARCQMSENSEYAAKCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00759420;
- 90% Identity
- iTF_00759420;
- 80% Identity
- iTF_00759420;