GBI_12637-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold108:1095559-1109994[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-11 2.5e-08 34.1 0.0 1 39 310 349 310 353 0.90 2 4 3.3e-13 4.5e-10 39.7 0.1 1 39 364 402 364 405 0.95 3 4 9e-17 1.2e-13 51.1 0.0 1 45 419 464 419 464 0.97 4 4 1.1e-19 1.5e-16 60.4 0.1 1 43 471 514 471 515 0.97
Sequence Information
- Coding Sequence
- ATGTTAAACCACTTGACTTCTGAACTCATCAAGTGCATGAAACTTACCATTTCTGAAGTGTCATCAAACTTGAATCTCAAGAAGACAGTTCACTCTGGCAGTCATGTGTGCCTTCCCCATCGCTGTATGTATCCTCAGTTGTATGCTCCCCTCAAGGTGCATGCATCGCTATGTTGTGGAGCTGTGCTAATGAGATACTTACTGCATGAACCATGCGCTAGCTGGGCGCCAACCAATGCCTGTGGGATTGACGCTGTGCAGGCTGCATCCTACGTGTTCCAGATGGTGCCCCACAGCAACGCACCTACGCCCGTACTTACACCTCATAGCATGGCACCTACTCCCCAGATGGTGATGGAAGGACATCCAGGTTCACACAGCAGTGGCAGTGGTACTGATGTGGACCTGCCCCCAGAGGCTCAGCCTGCAGCTCCGCAAGCAACACTCGTGGAGAATATGGAAATGGAATGTTCAGATCGCAGTCGTGACATGCAAGACACTTCTGAGAGAAATATATCTCTTACAGCAGAGCCCTCTGGTCAAGTGCATCGAGAGGAAAATGTGAAAGTTAAATTCGAGACACTTCGAGCTATGGAACAAGCAGATACAATTGATATTGATAGCCACATGTCTGAGAGGAATGTTGAAGATGAACACACAATGCACACAATGATGATCACTCCTGAACTGCTAGGACTTATCCCGTCGTCATCTGGACATTCAGATCTGAGTGGGGATGCTGTGAAGGGCAGCCCCAAGAGCTGGACCCAGGAGCACATGGAGATTTCGGGTACATACAGCCTAGCAGGTGCATGCCCCTCCCCAGCTGGCTGCTGCTTTAATCCTCCGACATCCACTGACTCTCGTTTTCTTTCAGATGTCAACAATGAAACAACGCCCAAAACAGGAGGAGGACCCAAGACTTGGACACAAGAGGACATGGAAATGGCATTGGATGCGTTACGCAATCATAATATGAGTCTGACAAAAGCATCTGCAACGTACGGAATCCCTTCCACCACTCTATGGCAACGGGCACACAGACTAGGTATTGACACTCCCAAGAAAGAAGGTCCGACGAAGAGTTGGACTGAAGACAACCTTAACAGTGCATTAGAAGCTCTTCGTACTGGTACCATATCAGCTAACAAAGCCAGTAAGGCATATGGAATTCCCAGCAGCACCCTGTACAAAATAGCACGACGTGAAGGTATCCGTCTGGCAGCACCTTTCAATGCAGCCCCTACTACCTGGAGCCCAGATGATTTGGAACGCGCTCTTGAGTCCATCCGGTCAGGGGCTTCCTCTGTGCAGCGAGCCTCTACCGAATTCGGCATCCCCACCGGTACCCTCTACGGGCGCTGCAAGAGAGAGGGCATAGAGTTGTCCCGTTCCAATCCCACCCCCTGGTCTGAAGATGCAATGGGAGAAGCTCTGGAGGCAGTGCGTGTGGGCCAGATGAGCATCAACCAGGCAGCCATCCACTACAACCTTCCTTACTCCTCCCTGTACGGTCGTTTCAAACGTGGCAAATACGAGGCAGAGGGGCACCACCCTGAGGAGCCACCAGGCCCATCACCACCACCACCTCAGATCATGGTGGTGCCCTACCAGCAGCCGCCACCACCCCCTCCTCATGCACAGCACCTCCCACCTCAACCTCCTCAACACCACTCACCTCAGCAGCACCCCATGTACCAGCACAGCAGCTGA
- Protein Sequence
- MLNHLTSELIKCMKLTISEVSSNLNLKKTVHSGSHVCLPHRCMYPQLYAPLKVHASLCCGAVLMRYLLHEPCASWAPTNACGIDAVQAASYVFQMVPHSNAPTPVLTPHSMAPTPQMVMEGHPGSHSSGSGTDVDLPPEAQPAAPQATLVENMEMECSDRSRDMQDTSERNISLTAEPSGQVHREENVKVKFETLRAMEQADTIDIDSHMSERNVEDEHTMHTMMITPELLGLIPSSSGHSDLSGDAVKGSPKSWTQEHMEISGTYSLAGACPSPAGCCFNPPTSTDSRFLSDVNNETTPKTGGGPKTWTQEDMEMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGASSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPEEPPGPSPPPPQIMVVPYQQPPPPPPHAQHLPPQPPQHHSPQQHPMYQHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -