Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4e-05 0.27 10.9 6.2 10 19 2 11 1 11 0.93

2 11 0.37 2.5e+03 -1.8 0.4 5 10 37 42 37 42 0.90

3 11 2.2e-08 0.00015 21.3 12.9 1 19 48 66 48 66 0.98

4 11 0.74 4.9e+03 -2.7 1.2 6 10 94 98 93 98 0.66

5 11 2.3e-07 0.0015 18.1 15.1 1 19 104 122 104 122 0.99

6 11 2 1.3e+04 -5.2 3.6 10 13 131 134 129 135 0.73

7 11 0.37 2.5e+03 -1.8 0.6 5 10 156 161 156 161 0.91

8 11 4e-09 2.7e-05 23.7 15.7 1 18 167 183 167 184 0.97

9 11 0.82 5.4e+03 -2.9 1.6 5 10 211 216 211 216 0.89

10 11 0.0018 12 5.6 8.9 1 11 222 232 222 233 0.94

11 11 0.011 75 3.1 0.6 4 10 237 243 235 244 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4e-05	0.27	10.9	6.2	10	19	2	11	1	11	0.93
2	11	0.37	2.5e+03	-1.8	0.4	5	10	37	42	37	42	0.90
3	11	2.2e-08	0.00015	21.3	12.9	1	19	48	66	48	66	0.98
4	11	0.74	4.9e+03	-2.7	1.2	6	10	94	98	93	98	0.66
5	11	2.3e-07	0.0015	18.1	15.1	1	19	104	122	104	122	0.99
6	11	2	1.3e+04	-5.2	3.6	10	13	131	134	129	135	0.73
7	11	0.37	2.5e+03	-1.8	0.6	5	10	156	161	156	161	0.91
8	11	4e-09	2.7e-05	23.7	15.7	1	18	167	183	167	184	0.97
9	11	0.82	5.4e+03	-2.9	1.6	5	10	211	216	211	216	0.89
10	11	0.0018	12	5.6	8.9	1	11	222	232	222	233	0.94
11	11	0.011	75	3.1	0.6	4	10	237	243	235	244	0.91

Coding Sequence: ATGTGCCATCCAGGAAAGTGCCCGTCGTGTAGTCTCAAAATTGAGCGAACTTGTGCTTGCAATCAAACTAAGATGATCATGAATTGTGTTTCGAAAAGGAGCGAACTCAAATGCGACAATATTTGCAGCAAGTTTTTAGACTGTGGCAAACACCGGTGTGAAACAAAGTGCCACTTTGGTAGTTGTGGCTCATGTCAGAAGTCATTCGAAGTGAAGTGCTTCTGTGGCAAGGAGACGCGAAGTGAGGTTTCTTGTATAGATCAACAGAATGGTTTTAGCTGTCATCAGATTTGTGCAAAGCTCCTCTCTTGTGGCTCTCACACTTGTTCTAAGCCATGTCATTCTGATTCTTGCGGAACTTGCCCTTTTGATCCTCGCACGGTAAATCATTGCCATTGTGGTAAAACTCCTGTTGCAAAGTTAGCCAACCAAAAGCCTCGAGTGCTATGCACTGACCCTATTCCGACATGCTCGTTGGTGTGTTCCAAGCCGCTGCCCTGCGGACACCAATGCAAACGGATTTGTCATCCCGGAAATTGTCCTCCTTGTGATCTAACAAATGTGATTCGCTGCGAGTGTGGTGCCAACTCTCAAAAGTTTGAATGCCAAGATCTCACATCTCTTCAATACAAGTGCAAGAGACGATGTAAAAAGAAATTGAGCTGTGGACGGCACAAGTGTCCAAATGAATGCTGTACTGACAGCGTACACTTCTGTCAGCAGACATGTGGTAAG
Protein Sequence: MCHPGKCPSCSLKIERTCACNQTKMIMNCVSKRSELKCDNICSKFLDCGKHRCETKCHFGSCGSCQKSFEVKCFCGKETRSEVSCIDQQNGFSCHQICAKLLSCGSHTCSKPCHSDSCGTCPFDPRTVNHCHCGKTPVAKLANQKPRVLCTDPIPTCSLVCSKPLPCGHQCKRICHPGNCPPCDLTNVIRCECGANSQKFECQDLTSLQYKCKRRCKKKLSCGRHKCPNECCTDSVHFCQQTCGK

Sequence clustering based on sequence similarity using MMseqs2